SNP Profiles of GU 136 /H   View Data

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 Key

 1234567891011121314
_Input profile
CCGGGGCCTTCCTTTTCCCCAAGGCCAA
1._RUQ_221
_GGGGCC___TT____CCAA
2._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
3._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
4._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
5._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
6._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
7._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
8._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
9._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
10._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
11._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
12._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
13._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
14._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
15._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
16._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
17._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
18._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
19._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
20._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
21._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
22._GC-03-019-2-08
CCGGGGCCTT_TT_CCCCAAGGCCAA
23._GU_136_/H
CCGGGGCCTT_TT_CCCCAAGGCCAA
24._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
25._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
26._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
27._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
28._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
29._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
30._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
31._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
32._GC-03-19-2-8
GGGGCCGGAAACAAAA__AAGGGGAA
 1516171819202122232425262728
_Input profile
CCAAGGCCCCGGGGAACCCCCCGGCCAA
1._RUQ_221
____CCGGGG_CCCCCCGGCCAA
2._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
3._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
4._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
5._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
6._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
7._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
8._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
9._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
10._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
11._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
12._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
13._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
14._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
15._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
16._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
17._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
18._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
19._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
20._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
21._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
22._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
23._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
24._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
25._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
26._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
27._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
28._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
29._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
30._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
31._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
32._GC-03-19-2-8
GGAAGGGGGGCCCC_GGCCCCCC_AA
 293031323334353637383940  
_Input profile
GGGGAACCGGCCAATTTTAAATGGX_XX_X
1._RUQ_221
GG_AACCGGCCAATTTTAA__X_XX_X
2._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
3._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
4._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
5._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
6._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
7._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
8._GU_136_/H
GGGGAACCGGCCAATT_AAATGGX_XX_X
9._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
10._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
11._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
12._GU_136_/H
GG_AACCGGCCAATTTTAAATGGX_XX_X
13._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
14._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
15._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
16._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
17._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
18._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
19._GC-03-019-2-08
GGGGAACCGGCCAATT_AAATGGX_XX_X
20._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
21._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
22._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
23._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
24._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
25._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
26._GC-03-019-2-08
GG_AACCGGCCAATTTTAAATGGX_XX_X
27._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
28._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
29._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
30._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
31._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
32._GC-03-19-2-8
_GGAAGGGGGGAAAAAAAAATGGX_XX_X

Input profile: GU_136_/H RUQ_221

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._GU_136_/H RUQ_221

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

3._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 7 > FP
 Dapeng Zhang, 2016

4._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 14 > F
 Dapeng Zhang, 2016

5._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 10 > F
 Dapeng Zhang, 2016

6._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 16
 Dapeng Zhang, 2016

7._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 13
 Dapeng Zhang, 2016

8._GU_136_/H

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 12
 Dapeng Zhang, 2016

9._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 11
 Dapeng Zhang, 2016

10._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 8
 Dapeng Zhang, 2016

11._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 6
 Dapeng Zhang, 2016

12._GU_136_/H

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 5
 Dapeng Zhang, 2016

13._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 4
 Dapeng Zhang, 2016

14._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 3
 Dapeng Zhang, 2016

15._GU_136_/H

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 2
 Dapeng Zhang, 2016

16._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

17._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

18._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

19._GU_136_/H GC-03-019-2-08

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

20._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

21._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

22._GU_136_/H GC-03-019-2-08

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

23._GU_136_/H

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3208 9 > FP
 Dapeng Zhang, 2016

24._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

25._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

26._GU_136_/H GC-03-019-2-08

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

27._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

28._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

30._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

31._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

32._GU_136_/H GC-03-19-2-8

47.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 8, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25