SNP Profiles of GU 125 /C   View Data

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 Key

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_Input profile
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
1._GU_125_/C
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
2._GC-01-138-7-17
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
3._GU_125_/C
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
4._GU_125_/C
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
5._GU_125_/C
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
6._GU_125_/C
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
7._GC-01-138-7-17
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
8._GC-01-138-7-17
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
9._GC-01-138-7-17
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
10._GC-01-138-7-17
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
11._GC-01-138-7-17
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
12._GU_125_/C
CCGGCCCCTTTTTTCCCCGGCCGGCCAA
13._RUQ_188
_GGCGCC__TT___CCAG__
14._RUQ_188
CCGGCGCCTTTTTTCCCCGGCCAGCCAA
15._RUQ_188
CCGGCGCCTTTTTTCCCCGGCCAGCCAA
16._GC-01-138-7-17
GGGGGGGGAAAAAA__GGGGGGGGAA
17._RUQ_188
GGGGCGGGAAAAAA__GGGGAGGGAA
 1516171819202122232425262728
_Input profile
GGCCCCGGGGAACCCCCCGGCCAAGGGG
1._GU_125_/C
GGCCCCGGGGAACCCCCCGGCCAAGGGG
2._GC-01-138-7-17
GGCCCCGGGGAACCCCCC_CCAAGGGG
3._GU_125_/C
GGCCCCGGGGAACCCCCCGGCCAAGGGG
4._GU_125_/C
GGCCCCGGGGAACCCCCCGGCCAAGGGG
5._GU_125_/C
GGCCCCGGGGAACCCCCC_CCAAGGGG
6._GU_125_/C
GGCCCCGGGGAACCCCCCGGCCAAGGGG
7._GC-01-138-7-17
GGCCCCGGGGAACCCCCCGGCCAAGGGG
8._GC-01-138-7-17
GGCCCCGGGGAACCCCCCGGCCAAGGGG
9._GC-01-138-7-17
GGCCCCGGGGAACCCCCCGGCCAAGGGG
10._GC-01-138-7-17
GGCCCCGGGGAACCCCCCGGCCAAGGGG
11._GC-01-138-7-17
GGCCCCGGGGAACCCCCCGGCCAAGGGG
12._GU_125_/C
GGCCCCGGGGAACCCCCCGGCCAAGGGG
13._RUQ_188
__CCGGGG_CCACCCGGCCAAGG_
14._RUQ_188
GGCCCCGGGGAGCCACCCGGCCAAGGGG
15._RUQ_188
GGCCCCGGGGAGCCACCCGGCCAAGGGG
16._GC-01-138-7-17
GGGGGGCCCC_GGCCCCCC_AA_GG
17._RUQ_188
GGGGGGCCCC_GGACCCCC_AA_GG
 29303132333435363738    
_Input profile
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
1._GU_125_/C
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
2._GC-01-138-7-17
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
3._GU_125_/C
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
4._GU_125_/C
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
5._GU_125_/C
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
6._GU_125_/C
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
7._GC-01-138-7-17
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
8._GC-01-138-7-17
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
9._GC-01-138-7-17
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
10._GC-01-138-7-17
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
11._GC-01-138-7-17
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
12._GU_125_/C
AACCGGCCAATTTTAAAAGGX_XX_XX_XX_X
13._RUQ_188
AACCGGCCAATTTTAA__X_XX_XX_XX_X
14._RUQ_188
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
15._RUQ_188
AACCGGCCAATTGTAAATGGX_XX_XX_XX_X
16._GC-01-138-7-17
AAGGGGGGAAAAAAAAAAGGX_XX_XX_XX_X
17._RUQ_188
AAGGGGGGAAAAAAAAATGGX_XX_XX_XX_X

Input profile: GU_125_/C

 
Mars Center for Cocoa Science, Brazil
Location: 1717 9
 Dapeng Zhang, 2016

1._GU_125_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 4 > FP
 Dapeng Zhang, 2016

2._GU_125_/C GC-01-138-7-17

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

3._GU_125_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 10 > F
 Dapeng Zhang, 2016

4._GU_125_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 1 > FP
 Dapeng Zhang, 2016

5._GU_125_/C

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 11
 Dapeng Zhang, 2016

6._GU_125_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._GU_125_/C GC-01-138-7-17

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._GU_125_/C GC-01-138-7-17

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._GU_125_/C GC-01-138-7-17

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

10._GU_125_/C GC-01-138-7-17

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

11._GU_125_/C GC-01-138-7-17

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

12._GU_125_/C

identical
38 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: Q6_EXT_2 20
 Dapeng Zhang, 2016

13._GU_125_/C RUQ_188

93.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._GU_125_/C RUQ_188

93.4 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._GU_125_/C RUQ_188

92.1 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._GU_125_/C GC-01-138-7-17

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 7, Rep: 17, Tree: 3
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

17._GU_125_/C RUQ_188

42.4 %
33 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1062
11TcSNP1060 12TcSNP998 13TcSNP994 14TcSNP953 15TcSNP929
16TcSNP917 17TcSNP891 18TcSNP872 19TcSNP723 20TcSNP645
21TcSNP619 22TcSNP591 23TcSNP577 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25