SNP Profiles of GU 125 /C   View Data

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 Key

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_Input profile
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
1._GU_125_/C
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
2._GC-01-138-7-17
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
3._GU_125_/C
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
4._GU_125_/C
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
5._GU_125_/C
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
6._GU_125_/C
CCGGCCCCTTTTTTCCCC_GGCCGGCC
7._GC-01-138-7-17
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
8._GC-01-138-7-17
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
9._GC-01-138-7-17
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
10._GC-01-138-7-17
CCGGCCCCTTTTTTCCCC_GGCCGGCC
11._GC-01-138-7-17
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
12._GU_125_/C
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
13._RUQ_188
_GGCGCC__TT____CCAG_
14._RUQ_188
CCGGCGCCTTTTTTCCCCAAGGCCAGCC
15._RUQ_188
CCGGCGCCTTTTTTCCCCAAGGCCAGCC
16._GC-01-138-7-17
GGGGGGGGAAAAAA__AAGGGGGGGG
17._RUQ_188
GGGGCGGGAAAAAA__AAGGGGAGGG
 1516171819202122232425262728
_Input profile
AAGGCCCCGGGGAACCCCCCGGCCAAGG
1._GU_125_/C
AAGGCCCCGGGGAACCCCCCGGCCAAGG
2._GC-01-138-7-17
AAGGCCCCGGGGAACCCCCC_CCAAGG
3._GU_125_/C
AAGGCCCCGGGGAACCCCCCGGCCAAGG
4._GU_125_/C
AAGGCCCCGGGGAACCCCCCGGCCAAGG
5._GU_125_/C
AAGGCCCCGGGGAACCCCCC_CCAAGG
6._GU_125_/C
AAGGCCCCGGGGAACCCCCCGGCCAAGG
7._GC-01-138-7-17
AAGGCCCCGGGGAACCCCCCGGCCAAGG
8._GC-01-138-7-17
AAGGCCCCGGGGAACCCCCCGGCCAAGG
9._GC-01-138-7-17
AAGGCCCCGGGGAACCCCCCGGCCAAGG
10._GC-01-138-7-17
AAGGCCCCGGGGAACCCCCCGGCCAAGG
11._GC-01-138-7-17
AAGGCCCCGGGGAACCCCCCGGCCAAGG
12._GU_125_/C
AAGGCCCCGGGGAACCCCCCGGCCAAGG
13._RUQ_188
___CCGGGG_CCACCCGGCCAAGG
14._RUQ_188
AAGGCCCCGGGGAGCCACCCGGCCAAGG
15._RUQ_188
AAGGCCCCGGGGAGCCACCCGGCCAAGG
16._GC-01-138-7-17
AAGGGGGGCCCC_GGCCCCCC_AA_
17._RUQ_188
AAGGGGGGCCCC_GGACCCCC_AA_
 2930313233343536373839   
_Input profile
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
1._GU_125_/C
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
2._GC-01-138-7-17
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
3._GU_125_/C
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
4._GU_125_/C
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
5._GU_125_/C
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
6._GU_125_/C
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
7._GC-01-138-7-17
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
8._GC-01-138-7-17
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
9._GC-01-138-7-17
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
10._GC-01-138-7-17
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
11._GC-01-138-7-17
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
12._GU_125_/C
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
13._RUQ_188
_AACCGGCCAATTTTAA__X_XX_XX_X
14._RUQ_188
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
15._RUQ_188
GGAACCGGCCAATTGTAAATGGX_XX_XX_X
16._GC-01-138-7-17
GGAAGGGGGGAAAAAAAAAAGGX_XX_XX_X
17._RUQ_188
GGAAGGGGGGAAAAAAAAATGGX_XX_XX_X

Input profile: GU_125_/C

 
Mars Center for Cocoa Science, Brazil
Location: 1717 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

1._GU_125_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 4 > FP
 Dapeng Zhang, 2016

2._GU_125_/C GC-01-138-7-17

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

3._GU_125_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 10 > F
 Dapeng Zhang, 2016

4._GU_125_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 1 > FP
 Dapeng Zhang, 2016

5._GU_125_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 11
 Dapeng Zhang, 2016

6._GU_125_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 9
 Dapeng Zhang, 2016

7._GU_125_/C GC-01-138-7-17

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._GU_125_/C GC-01-138-7-17

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._GU_125_/C GC-01-138-7-17

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

10._GU_125_/C GC-01-138-7-17

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

11._GU_125_/C GC-01-138-7-17

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

12._GU_125_/C

identical
39 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: Q6_EXT_2 20
 Dapeng Zhang, 2016

13._GU_125_/C RUQ_188

93.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._GU_125_/C RUQ_188

93.6 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._GU_125_/C RUQ_188

92.3 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._GU_125_/C GC-01-138-7-17

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 7, Rep: 17, Tree: 3
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

17._GU_125_/C RUQ_188

44.1 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25