SNP Profiles of EET 58 [ECU]   View Data

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 Key

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_Input profile
CTAGCGCTCTACCTGTCTCTATAGCCAG
1._RUQ_383
CTAGCGCTCTACCTGTCTCTATAGCCAG
2._EET_58_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
3._EET_58_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
4._EET_58_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
5._EET_58_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
6._EET_58_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
7._EET_58_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
8._EET_58_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
9._EET_58_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
10._GC-08-287-8-59
CCAGCGCTCTAACTGTCTCTAAAGCCAG
11._GC-08-287-8-59
CCAGCGCTCTAACTGTCTCTAAAGCCAG
12._GC-08-287-8-59
CCAGCGCTCTAACTGTCTCTAAAGCCAG
13._GC-08-287-8-59
CCAGCGCTCTAACTGTCTCTAAAGCCAG
14._GC-08-287-8-59
CCAGCGCTCTAACTGTCTCTAAAGCCAG
15._GC-08-287-8-59
CCAGCGCTCTAACTGTCTCTAAAGCCAG
16._GC-08-287-8-59
CCAGCGCTCTAACTGTCTCTAAAGCCAG
17._GC-08-287-8-59
CCAGCGCTCTAACTGTCTCTAAAGCCAG
18._GC-08-287-8-59
CCAGCGCTCTAACTGTCTCTAAAGCCAG
19._EET_58_[ECU]
CCAGCGCTCTAACTGTCTCTAAAGCCAG
 1516171819202122232425262728
_Input profile
TTATGGCTCTGGGGAGTTCCCGGTCTAC
1._RUQ_383
TTATGGCTCTGGGGAGCTCCCGGTCTAC
2._EET_58_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
3._EET_58_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
4._EET_58_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
5._EET_58_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
6._EET_58_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
7._EET_58_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
8._EET_58_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
9._EET_58_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
10._GC-08-287-8-59
TTATGGCTCTGGGGAGTTCCCGGGCTAC
11._GC-08-287-8-59
TTATGGCTCTGGGGAGTTCCCGGGCTAC
12._GC-08-287-8-59
TTATGGCTCTGGGGAGTTCCCGGGCTAC
13._GC-08-287-8-59
TTATGGCTCTGGGGAGTTCCCGGGCTAC
14._GC-08-287-8-59
TTATGGCTCTGGGGAGTTCCCGGGCTAC
15._GC-08-287-8-59
TTATGGCTCTGGGGAGTTCCCGGGCTAC
16._GC-08-287-8-59
TTATGGCTCTGGGGAGTTCCCGGGCTAC
17._GC-08-287-8-59
TTATGGCTCTGGGGAGTTCCCGGGCTAC
18._GC-08-287-8-59
TTATGGCTCTGGGGAGTTCCCGGGCTAC
19._EET_58_[ECU]
TTATGGCTCTGGGGAGTTCCCGGGCTAC
 293031323334353637383940  
_Input profile
AGAGATCCAACGCCCTGTCCATCGX_XX_X
1._RUQ_383
AGGGATCCAACGCCCTGTCCATCGX_XX_X
2._EET_58_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
3._EET_58_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
4._EET_58_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
5._EET_58_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
6._EET_58_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
7._EET_58_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
8._EET_58_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
9._EET_58_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
10._GC-08-287-8-59
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
11._GC-08-287-8-59
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
12._GC-08-287-8-59
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
13._GC-08-287-8-59
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
14._GC-08-287-8-59
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
15._GC-08-287-8-59
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
16._GC-08-287-8-59
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
17._GC-08-287-8-59
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
18._GC-08-287-8-59
GGAGATCCAGCCCCCTGTCCATCGX_XX_X
19._EET_58_[ECU]
GGAGATCCAGCCCCCTGTCCATCGX_XX_X

Input profile: EET_58_[ECU]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F465 T10
 Dapeng Zhang, 2016

1._EET_58_[ECU] RUQ_383

96.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._EET_58_[ECU]

83.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 3
 Dapeng Zhang, 2016

3._EET_58_[ECU]

83.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 9
 Dapeng Zhang, 2016

4._EET_58_[ECU]

83.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 8
 Dapeng Zhang, 2016

5._EET_58_[ECU]

83.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 7
 Dapeng Zhang, 2016

6._EET_58_[ECU]

83.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 6
 Dapeng Zhang, 2016

7._EET_58_[ECU]

83.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 5
 Dapeng Zhang, 2016

8._EET_58_[ECU]

83.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 4
 Dapeng Zhang, 2016

9._EET_58_[ECU]

83.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 10
 Dapeng Zhang, 2016

10._EET_58_[ECU] GC-08-287-8-59

83.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._EET_58_[ECU] GC-08-287-8-59

83.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._EET_58_[ECU] GC-08-287-8-59

83.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._EET_58_[ECU] GC-08-287-8-59

83.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._EET_58_[ECU] GC-08-287-8-59

83.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._EET_58_[ECU] GC-08-287-8-59

83.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._EET_58_[ECU] GC-08-287-8-59

83.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

17._EET_58_[ECU] GC-08-287-8-59

83.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

18._EET_58_[ECU] GC-08-287-8-59

83.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._EET_58_[ECU]

83.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

 

 Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25