SNP Profiles of ICS%201   View Data

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 Key

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_Input profile
CTAAAAGTCCAGAACGAGCTAGAAATCG
1._ICS_1
__AAGTCC_AACGAGCT__AT_
2._ICS_1
__AAGTCC_AACGAGCT__AT_
3._ICS_1
__AAGTCC_AACGAGCT__AT_
4._ICS_1
__AAGTCC_AACGAGCT__AT_
5._ICS_1
__AAGTCC_AACGAGCT__AT_
6._ICS_1
__AAGTCC_AACGAGCT__AT_
7._ICS_1
__AAGTCC_AACGAGCT__AT_
8._NA
CTAAAAGTCCAGAACGAGCTAGAAATCG
9._NA
CTAAAAGTCCAGAACGAGCTAGAAATCG
10._NA
CTAAAAGTCCAGAACGAGCTAGAAATCG
11._NA
CTAAAAGTCCAGAACGAGCTAGAAATCG
12._NA
CTAAAAGTCCAGAACGAGCTAGAAATCG
13._NA
CTAAAAGTCCAGAACGAGCTAGAAATCG
14._RUQ_847
__AAGTCC_AACGAGCT__AT_
15._RUQ_847
__AA_____AG_AG___
16._RUQ_847
__AA_CCAGAACGAG__AAATCG
17._RUQ_847
__AAGTCC_AACGAGCT__AT_
18._ICS_1
__ACGTCC_AACCAACC__AA_
19._RUQ_847
AGAAAAACGGAGAACGAGAGAGAAATCG
20._MITC-000297
AGAAAAACGGAGAACGAGAGAGAAATCG
21._ICS_1_Fld#_73_Plt#_2
AGAAAAACGGAGAACGAGAGAGAAATCG
22._ICS1
__CC_CTAGACCGAG__AGTTGG
 1516171819202122232425262728
_Input profile
AGCCTTTTCCAACTTTCTGTGGGTACCG
1._ICS_1
AGCCTTTTCCAC_TT_GT___CG
2._ICS_1
AGCCTTTTCCAC_TT_GT___CG
3._ICS_1
AGCCTTTTCCAC_TT_GT___CG
4._ICS_1
AGCCTTTTCCAC_TT_GT___CG
5._ICS_1
AGCCTTTTCCAC_TT_GT___CG
6._ICS_1
AGCCTTTT_AC_TT_GT___CG
7._ICS_1
_CCTTTTCCAC_TT_GT____
8._NA
AGCCTTTTCCACCTTTCCGTGGGTACCG
9._NA
AGCCTTTTCCACCTTTCCGTGGGTACCG
10._NA
AGCCTTTTCCACCTTTCCGTGGGTACCG
11._NA
AGCCTTTTCCACCTTTCCGTGGGTACCG
12._NA
AGCCTTTTCCACCTTTCCGTGGGTACCG
13._NA
AGCCTTTT_ACCTTTCCGTGGGTACCG
14._RUQ_847
AGCCTTTTCCAC_TT_GT___CG
15._RUQ_847
_AC__CCACCT_CTGTGG_ACCG
16._RUQ_847
____CCACCT______CG
17._RUQ_847
AGCCCTTTCCAC_CT_GT___CG
18._ICS_1
AGAACTGGCGCC_TT_GG___GG
19._RUQ_847
_CC_AACCACAGAA_ACGGACACCG
20._MITC-000297
_CC_AACCACAGAA_ACGGACACCG
21._ICS_1_Fld#_73_Plt#_2
_CC_AACCACAGAA_ACGGACACCG
22._ICS1
____CCCCCC______CG
 29303132333435363738394041 
_Input profile
CGCCAGTTGTAAAATTCTTTCTGGAAX_X
1._ICS_1
_CCAGTT___TT__CTGGAAX_X
2._ICS_1
_CCAGTT___TT__CTGGAAX_X
3._ICS_1
_CCAGTT___TT__CTGGAAX_X
4._ICS_1
_CCAGTT___TT__CTGGAAX_X
5._ICS_1
_CCAGTT___TT__CTGGAAX_X
6._ICS_1
_CCAGTT___TT__CTGGAAX_X
7._ICS_1
_CCAGTT___TT__CTGGAAX_X
8._NA
CGCCAGTTGTAAAATTTTTTCTGGAAX_X
9._NA
CGCCAGTTGTAAAATTTTTTCTGGAAX_X
10._NA
CGCCAGTTGTAAAATTTTTTCTGGAAX_X
11._NA
CGCCAGTTGTAAAATTTTTTCTGGAAX_X
12._NA
CGCCAGTTGTAAAATTTTTTCTGGAAX_X
13._NA
CGCCAGTTGTAAAATTTTTTCTGGAAX_X
14._RUQ_847
_CCAGTT___TT__CTGGAGX_X
15._RUQ_847
__AG____TT___GG_X_X
16._RUQ_847
CGCC_TT_AAAA__TT_CC_X_X
17._RUQ_847
_CCAGTT___TT__CTGGAGX_X
18._ICS_1
_CCAGCC___TT__CTGGGGX_X
19._RUQ_847
_GGAGAAACAA_AAAGAAAGCCAAX_X
20._MITC-000297
_GGAGAAACAA_AAAGAAAGCCAAX_X
21._ICS_1_Fld#_73_Plt#_2
_GGAGAAACAA_AAAGAAAGCCAAX_X
22._ICS1
GGCT_CC_GGTT__CT_CG_X_X

Input profile: ICS_1 RUQ_847

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._ICS_1

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

2._ICS_1

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

3._ICS_1

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

4._ICS_1

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

5._ICS_1

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._ICS_1

97.8 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

7._ICS_1

97.7 %
22 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

8._ICS_1 NA

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

9._ICS_1 NA

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

10._ICS_1 NA

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

11._ICS_1 NA

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._ICS_1 NA

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._ICS_1 NA

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

14._ICS_1 RUQ_847

95.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._ICS_1 RUQ_847

93.3 %
15 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

16._ICS_1 RUQ_847

92.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

17._ICS_1 RUQ_847

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._ICS_1

60.4 %
24 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

19._ICS_1 RUQ_847

51.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

20._ICS_1 MITC-000297

51.4 %
36 shared markers

USDA-SHRS, United States of America
 Mars, 2018

21._ICS_1 ICS_1_Fld#_73_Plt#_2

51.4 %
36 shared markers

USDA-TARS, United States of America
Location: Field: 73, Tree: 2
 Mars, 2018

22._ICS_1 ICS1

50 %
20 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP1060 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1253 37TcSNP1309 38TcSNP1439 39TcSNP1442 40TcSNP1458
41TcSNP1484