SNP Profiles of GU%20221%20/C   View Data

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 Key

 1234567891011121314
_Input profile
TTCCAATTTTGGAACCGGCCGGGGAACC
1._GU_221_/C
__AATTTT_AACCGGCC__AA_
2._GU_221_/C
__AATTTT_AACCGGCC__AA_
3._GU_221_/C
__AATTTT_AACCGGCC__AA_
4._GU_221_/C
__AATTTT_AACCGGCC__AA_
5._GU_221_/C
__AATTTT_AACCGGCC__AA_
6._GU_221_/C
__AATTTT_AACCGGCC__AA_
7._GU_221_/C
__AATTTT_AACCGGCC__AA_
8._GU_221_/C
__AATTTT_AACCGGCC__AA_
9._GU_221_/C
__AATTTT_AACCGGCC__AA_
10._GU_221_/C
__AATTTT_AACCGGCC__AA_
11._GU_221_/C
__AATTTT_AACCGGCC__AA_
12._RUQ_200
__AATTTT_AACCGGCC__AA_
13._GU_221_/C
__AATTTT_AACCGGCC__AA_
14._RUQ_200
__AA_____GG_GG___
15._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
16._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
17._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
18._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
19._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
20._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
21._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
22._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
23._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
24._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
25._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
26._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
27._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
28._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
29._GU_221_/C
__AATTTT_AACCGGCC__AA_
30._GU_221_/C
__AATTTT_AACCGGCC__AA_
31._GC-01-75-4-11
AACCAAAAAAGGAAGGGGGGGGGGAAGG
32._RUQ_200
AACCAAAAAAGGAAGGGGGGGGGGAAGG
 1516171819202122232425262728
_Input profile
AGAACCGGCCACCCCCCCGGAATTAAGG
1._GU_221_/C
AGAACCGGCCAC_CC_GG___GG
2._GU_221_/C
AGAACCGGCCAC_CC_GG___GG
3._GU_221_/C
AGAACCGGCCAC_CC_GG___GG
4._GU_221_/C
AGAACCGGCCAC_CC_GG___GG
5._GU_221_/C
AGAACCGGCCAC_CC_GG___GG
6._GU_221_/C
AGAACCGGCCAC_CC_GG___GG
7._GU_221_/C
AGAACCGGCCAC_CC_GG___GG
8._GU_221_/C
AGAACCGGCCAC_CC_GG___GG
9._GU_221_/C
AGAACCGGCCAC_CC_GG___GG
10._GU_221_/C
AGAACCGGCCAC_CC_GG___GG
11._GU_221_/C
AGAACCGGCCAC_CC_GG___GG
12._RUQ_200
AGAACCGGCCAC_CC_GG___GG
13._GU_221_/C
AGAACCGGCCAC___GG___GG
14._RUQ_200
_AA__CCACCC_CCGGAA_AAGG
15._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
16._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
17._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
18._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
19._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
20._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
21._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
22._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
23._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
24._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAA_AAGG
25._GC-01-075-4-11
AGAACCGGCCACCC_CTGGAATTAAGG
26._GC-01-075-4-11
AGAACCGGCCACCCCCCTGG_TTAAGG
27._GC-01-075-4-11
GGAACCGGCCCCCCCCCCGGAATTAAGG
28._GC-01-075-4-11
GGAACCGGCCCCCCCCCCGGAATTAAGG
29._GU_221_/C
GGAACCGGCCCC_CC_GG___GG
30._GU_221_/C
GGAACCGGCCCC_CC_GG___GG
31._GC-01-75-4-11
_AA_CCCCACGGGG_CCAAAAAACC
32._RUQ_200
_AA_CCCCACGGGG_CCAAAAAACC
 2930313233343536373839404142
_Input profile
CCCCAACCCCGGGGTTTTCTCCCCGGAG
1._GU_221_/C
_CCAA_CC___TT__CCGGAG
2._GU_221_/C
_CCAA_CC___TT__CCGGAG
3._GU_221_/C
_CCAA_CC___TT__CCGGAG
4._GU_221_/C
_CCAA_CC___TT__CCGGAG
5._GU_221_/C
_CCAA_CC___TT__CCGGAG
6._GU_221_/C
_CCAA_CC___TT__CCGGAG
7._GU_221_/C
_CCAA_CC___TT__CCGGAG
8._GU_221_/C
_CCAA_CC___TT__CCGGAG
9._GU_221_/C
_CCAA_CC___TT__CCGGAG
10._GU_221_/C
_CCAA_CC___TT__CCGGAG
11._GU_221_/C
_CCAA_CC___TT__CCGGAG
12._RUQ_200
_CCAA_CC___TT__CCGGAG
13._GU_221_/C
_CCAA_CC___TT__CCGGAG
14._RUQ_200
__AACC____TT___GG_
15._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
16._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
17._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
18._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
19._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
20._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
21._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
22._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
23._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
24._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
25._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
26._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
27._GC-01-075-4-11
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
28._GC-01-075-4-11
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
29._GU_221_/C
_CCGG_CC___TT__CCCCGG
30._GU_221_/C
_CCGG_CC___TT__CCCCGG
31._GC-01-75-4-11
_GGAA_GGCCGG_AAAGGGGGCCAG
32._RUQ_200
_GGAA_GGCCGG_AAAGGGGGCCAG

Input profile: GU_221_/C RUQ_200

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._GU_221_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

2._GU_221_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 8
 Dapeng Zhang, 2016

3._GU_221_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 9
 Dapeng Zhang, 2016

4._GU_221_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 10
 Dapeng Zhang, 2016

5._GU_221_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 12
 Dapeng Zhang, 2016

6._GU_221_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 14
 Dapeng Zhang, 2016

7._GU_221_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 16
 Dapeng Zhang, 2016

8._GU_221_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 13 > F
 Dapeng Zhang, 2016

9._GU_221_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

10._GU_221_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

11._GU_221_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 4 > FP
 Dapeng Zhang, 2016

12._GU_221_/C RUQ_200

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

13._GU_221_/C

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 6
 Dapeng Zhang, 2016

14._GU_221_/C RUQ_200

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

15._GU_221_/C GC-01-075-4-11

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

16._GU_221_/C GC-01-075-4-11

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

17._GU_221_/C GC-01-075-4-11

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

18._GU_221_/C GC-01-075-4-11

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

19._GU_221_/C GC-01-075-4-11

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

20._GU_221_/C GC-01-075-4-11

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

21._GU_221_/C GC-01-075-4-11

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

22._GU_221_/C GC-01-075-4-11

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

23._GU_221_/C GC-01-075-4-11

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

24._GU_221_/C GC-01-075-4-11

97.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

25._GU_221_/C GC-01-075-4-11

97.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

26._GU_221_/C GC-01-075-4-11

97.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

27._GU_221_/C GC-01-075-4-11

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

28._GU_221_/C GC-01-075-4-11

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

29._GU_221_/C

85.4 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 11
 Dapeng Zhang, 2016

30._GU_221_/C

85.4 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 1 > FP
 Dapeng Zhang, 2016

31._GU_221_/C GC-01-75-4-11

44.4 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

32._GU_221_/C RUQ_200

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484