SNP Profiles of GU 221/C   View Data

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 Key

 1234567891011121314
_Input profile
TTCCAATTTTGGAACCGGCCGGGGAACC
1._GU_221_/C
__AATTTT_AACCGGCC__AA_
2._RUQ_200
__AATTTT_AACCGGCC__AA_
3._GU_221_/C
__AATTTT_AACCGGCC__AA_
4._GU_221_/C
__AATTTT_AACCGGCC__AA_
5._GU_221_/C
__AATTTT_AACCGGCC__AA_
6._GU_221_/C
__AATTTT_AACCGGCC__AA_
7._GU_221_/C
__AATTTT_AACCGGCC__AA_
8._GU_221_/C
__AATTTT_AACCGGCC__AA_
9._GU_221_/C
__AATTTT_AACCGGCC__AA_
10._GU_221_/C
__AATTTT_AACCGGCC__AA_
11._GU_221_/C
__AATTTT_AACCGGCC__AA_
12._GU_221_/C
__AATTTT_AACCGGCC__AA_
13._GU_221_/C
__AATTTT_AACCGGCC__AA_
14._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
15._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
16._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
17._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
18._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
19._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
20._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
21._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
22._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
23._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
24._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
25._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
26._GU_221_/C
__AATTTT_AACCGGCC__AA_
27._GU_221_/C
__AATTTT_AACCGGCC__AA_
28._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
29._GC-01-075-4-11
TTCCAATTTTGGAACCGGCCGGGGAACC
30._GC-01-75-4-11
AACCAAAAAAGGAAGGGGGGGGGGAAGG
31._RUQ_200
AACCAAAAAAGGAAGGGGGGGGGGAAGG
 1516171819202122232425262728
_Input profile
AGAACCGGCCACCCCCCCGGAATTAAGG
1._GU_221_/C
AGAACCGGCCAC_CC_GG___GG
2._RUQ_200
AGAACCGGCCAC_CC_GG___GG
3._GU_221_/C
AGAACCGGCCAC_CC_GG___GG
4._GU_221_/C
AGAACCGGCCAC_CC_GG___GG
5._GU_221_/C
AGAACCGGCCAC_CC_GG___GG
6._GU_221_/C
AGAACCGGCCAC_CC_GG___GG
7._GU_221_/C
AGAACCGGCCAC_CC_GG___GG
8._GU_221_/C
AGAACCGGCCAC_CC_GG___GG
9._GU_221_/C
AGAACCGGCCAC_CC_GG___GG
10._GU_221_/C
AGAACCGGCCAC_CC_GG___GG
11._GU_221_/C
AGAACCGGCCAC___GG___GG
12._GU_221_/C
AGAACCGGCCAC_CC_GG___GG
13._GU_221_/C
AGAACCGGCCAC_CC_GG___GG
14._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
15._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
16._GC-01-075-4-11
AGAACCGGCCACCCCCCTGG_TTAAGG
17._GC-01-075-4-11
AGAACCGGCCACCC_CTGGAATTAAGG
18._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
19._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
20._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
21._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAA_AAGG
22._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
23._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
24._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
25._GC-01-075-4-11
AGAACCGGCCACCCCCCTGGAATTAAGG
26._GU_221_/C
GGAACCGGCCCC_CC_GG___GG
27._GU_221_/C
GGAACCGGCCCC_CC_GG___GG
28._GC-01-075-4-11
GGAACCGGCCCCCCCCCCGGAATTAAGG
29._GC-01-075-4-11
GGAACCGGCCCCCCCCCCGGAATTAAGG
30._GC-01-75-4-11
_AA_CCCCACGGGG_CCAAAAAACC
31._RUQ_200
_AA_CCCCACGGGG_CCAAAAAACC
 2930313233343536373839404142
_Input profile
CCCCAACCCCGGGGTTTTCTCCCCGGAG
1._GU_221_/C
_CCAA_CC___TT__CCGGAG
2._RUQ_200
_CCAA_CC___TT__CCGGAG
3._GU_221_/C
_CCAA_CC___TT__CCGGAG
4._GU_221_/C
_CCAA_CC___TT__CCGGAG
5._GU_221_/C
_CCAA_CC___TT__CCGGAG
6._GU_221_/C
_CCAA_CC___TT__CCGGAG
7._GU_221_/C
_CCAA_CC___TT__CCGGAG
8._GU_221_/C
_CCAA_CC___TT__CCGGAG
9._GU_221_/C
_CCAA_CC___TT__CCGGAG
10._GU_221_/C
_CCAA_CC___TT__CCGGAG
11._GU_221_/C
_CCAA_CC___TT__CCGGAG
12._GU_221_/C
_CCAA_CC___TT__CCGGAG
13._GU_221_/C
_CCAA_CC___TT__CCGGAG
14._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
15._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
16._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
17._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
18._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
19._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
20._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
21._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
22._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
23._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
24._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
25._GC-01-075-4-11
CCCCAACCCCGGGGTTTTTTCCCCGGAG
26._GU_221_/C
_CCGG_CC___TT__CCCCGG
27._GU_221_/C
_CCGG_CC___TT__CCCCGG
28._GC-01-075-4-11
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
29._GC-01-075-4-11
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
30._GC-01-75-4-11
_GGAA_GGCCGG_AAAGGGGGCCAG
31._RUQ_200
_GGAA_GGCCGG_AAAGGGGGCCAG

Input profile: GU_221_/C RUQ_200

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._GU_221_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

2._GU_221_/C RUQ_200

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._GU_221_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 13 > F
 Dapeng Zhang, 2016

4._GU_221_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 16
 Dapeng Zhang, 2016

5._GU_221_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 14
 Dapeng Zhang, 2016

6._GU_221_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 12
 Dapeng Zhang, 2016

7._GU_221_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 10
 Dapeng Zhang, 2016

8._GU_221_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 4 > FP
 Dapeng Zhang, 2016

9._GU_221_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 9
 Dapeng Zhang, 2016

10._GU_221_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 8
 Dapeng Zhang, 2016

11._GU_221_/C

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 6
 Dapeng Zhang, 2016

12._GU_221_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._GU_221_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

14._GU_221_/C GC-01-075-4-11

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

15._GU_221_/C GC-01-075-4-11

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._GU_221_/C GC-01-075-4-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

17._GU_221_/C GC-01-075-4-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

18._GU_221_/C GC-01-075-4-11

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

19._GU_221_/C GC-01-075-4-11

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

20._GU_221_/C GC-01-075-4-11

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

21._GU_221_/C GC-01-075-4-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

22._GU_221_/C GC-01-075-4-11

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

23._GU_221_/C GC-01-075-4-11

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

24._GU_221_/C GC-01-075-4-11

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

25._GU_221_/C GC-01-075-4-11

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

26._GU_221_/C

79.2 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 11
 Dapeng Zhang, 2016

27._GU_221_/C

79.2 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 1 > FP
 Dapeng Zhang, 2016

28._GU_221_/C GC-01-075-4-11

85.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

29._GU_221_/C GC-01-075-4-11

85.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

30._GU_221_/C GC-01-75-4-11

44.4 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

31._GU_221_/C RUQ_200

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

 Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484