SNP Profiles of GU 168/H   View Data

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 Key

 1234567891011121314
_Input profile
TTCCAATTTTGGAACCGGCCGGGGAACC
1._RUQ_223
__AATTTT_AACCGGCC__AA_
2._GU_168_/H
__AATTTT_AACCGGCC__AA_
3._GU_168_/H
__AATTTT_AACCGGCC__AA_
4._GU_168_/H
__AATTTT_AACCGGCC__AA_
5._GU_168_/H
__AATTTT_AACCGGCC__AA_
6._GU_168_/H
__AATTTT_AACCGGCC__AA_
7._GU_168_/H
__AATTTT_AACCGGCC__AA_
8._GU_168_/H
___TTTT_AACCGGCC__AA_
9._GU_168_/H
__AATTTT_AACCGGCC__AA_
10._GC-03-023-2-12
TTCCAATTTTGGAACCGGCCGGGGAACC
11._GU_168_/H
__AATT__AACCGGCC__AA_
12._GC-03-023-2-12
TTCCAATTTTGGAACCGGCCGGGGAACC
13._GC-03-023-2-12
TTCC_TTTTGGAACCGGCCGGGGAACC
14._GC-03-023-2-12
TTCCAATTTTGGAACCGGCCGGGGAACC
15._GC-03-023-2-12
TTCCAATTTTGGAACCGGCCGGGGAACC
16._GC-03-023-2-12
TTCCAATT_GGAACCGGCCGGGGAACC
17._GC-03-023-2-12
TTCCAATTTTGGAACCGGCCGGGGAACC
18._GC-03-023-2-12
TTCCAATTTTGGAACCGGCCGGGGAACC
19._GC-03-023-2-12
TTCCAATTTTGGAACCGGCCGGGGAACC
20._GC-03-023-2-12
TTCCAATTTTGGAACCGGCCGGGGAACC
21._GU_168_/H
__AATTTT_AACCGGCC__AA_
22._GU_168_/H
__ACTTCC_AACCAACC__AA_
23._GC-03-023-2-12
TTCCACTTCCGGAACCAACCGGGGAACC
24._GC-03-23-2-12
AACCAAAAAAGGAAGGGGGGGGGGAAGG
 1516171819202122232425262728
_Input profile
AGAACCGGCCCCCCCCCCGGAATTAAGG
1._RUQ_223
AGAACCGGCCCC_CC_GG___GG
2._GU_168_/H
GGAACCGGCCCC_CC_GG___GG
3._GU_168_/H
GGAACCGGCCCC_CC_GG___GG
4._GU_168_/H
GGAACCGGCCCC_CC_GG___GG
5._GU_168_/H
GGAACCGGCCCC_CC_GG___GG
6._GU_168_/H
GGAACCGGCCCC_CC_GG___GG
7._GU_168_/H
GGAACCGGCCCC_CC_GG___GG
8._GU_168_/H
GGAACCGGCCCC_CC_GG___GG
9._GU_168_/H
GGAACCGGCCCC_CC_GG___GG
10._GC-03-023-2-12
GGAACCGGCCCCCCCCCCGGAATTAAGG
11._GU_168_/H
GGAACCGGCCCC_CC_GG___GG
12._GC-03-023-2-12
GGAACCGGCCCCCCCCCCGGAATTAAGG
13._GC-03-023-2-12
GGAACCGGCCCCCCCCCCGGAATTAAGG
14._GC-03-023-2-12
GGAACCGGCCCCCCCCCCGGAATTAAGG
15._GC-03-023-2-12
GGAACCGGCCCCCCCCCCGGAATTAAGG
16._GC-03-023-2-12
GGAACCGGCCCCCCCCCCGGAATTAAGG
17._GC-03-023-2-12
GGAACCGGCCCCCCCCCCGGAATTAAGG
18._GC-03-023-2-12
GGAACCGG_CCCCCCCCGGAATTAAGG
19._GC-03-023-2-12
GGAACCGGCCCCCCCCCCGGAATTAAGG
20._GC-03-023-2-12
GGAACCGGCCCCCCCCCCGGAATTAAGG
21._GU_168_/H
GGAACCGG_CC_CC_GG___GG
22._GU_168_/H
AACCTTTTCCCC_TT_GG___GG
23._GC-03-023-2-12
AACCTTTTCCCCTTTTCCGGGGTTAAGG
24._GC-03-23-2-12
_AA_CCCCCCGGGG_CCAAAAAACC
 2930313233343536373839404142
_Input profile
CCCCAGCCCCGGGGTTTTTTCCCCGGAG
1._RUQ_223
_CCAG_CC___TT__CCGGAG
2._GU_168_/H
_CCGG_CC___TT__CCCCGG
3._GU_168_/H
_CCGG_CC___TT__CCCCGG
4._GU_168_/H
_CCGG_CC___TT__CCCCGG
5._GU_168_/H
_CCGG_CC___TT__CCCCGG
6._GU_168_/H
_CCGG_CC___TT__CCCCGG
7._GU_168_/H
_CCGG_CC___TT__CCCCGG
8._GU_168_/H
_CCGG_CC___TT__CCCCGG
9._GU_168_/H
_CCGG_CC___TT__CCCCGG
10._GC-03-023-2-12
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
11._GU_168_/H
_CCGG_CC___TT__CCCCGG
12._GC-03-023-2-12
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
13._GC-03-023-2-12
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
14._GC-03-023-2-12
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
15._GC-03-023-2-12
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
16._GC-03-023-2-12
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
17._GC-03-023-2-12
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
18._GC-03-023-2-12
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
19._GC-03-023-2-12
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
20._GC-03-023-2-12
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
21._GU_168_/H
_CCGG_CC___TT__CCCCGG
22._GU_168_/H
_CCGG_CC___TT__CTGGAA
23._GC-03-023-2-12
CCCCGGTTCCGGAATTTTTTTTCTGGAA
24._GC-03-23-2-12
_GGGG_GGCCGG_AAAAGGGGGGGG

Input profile: GU_168_/H RUQ_223

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._GU_168_/H RUQ_223

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._GU_168_/H

83.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 10 > F
 Dapeng Zhang, 2016

3._GU_168_/H

83.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 1 > FP
 Dapeng Zhang, 2016

4._GU_168_/H

83.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 15
 Dapeng Zhang, 2016

5._GU_168_/H

83.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 13
 Dapeng Zhang, 2016

6._GU_168_/H

83.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 6
 Dapeng Zhang, 2016

7._GU_168_/H

83.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 4
 Dapeng Zhang, 2016

8._GU_168_/H

82.6 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 3
 Dapeng Zhang, 2016

9._GU_168_/H

83.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._GU_168_/H GC-03-023-2-12

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

11._GU_168_/H

82.6 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 7 > FP
 Dapeng Zhang, 2016

12._GU_168_/H GC-03-023-2-12

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._GU_168_/H GC-03-023-2-12

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._GU_168_/H GC-03-023-2-12

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._GU_168_/H GC-03-023-2-12

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._GU_168_/H GC-03-023-2-12

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

17._GU_168_/H GC-03-023-2-12

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP1
 Mars, 2018

18._GU_168_/H GC-03-023-2-12

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

19._GU_168_/H GC-03-023-2-12

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

20._GU_168_/H GC-03-023-2-12

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

21._GU_168_/H

82.6 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 12 > F
 Dapeng Zhang, 2016

22._GU_168_/H

58.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 16
 Dapeng Zhang, 2016

23._GU_168_/H GC-03-023-2-12

64.3 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

24._GU_168_/H GC-03-23-2-12

41.7 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

 Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484