SNP Profiles of GU 147 /H   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
TTCCAATTTTGGAACCGGCCGGGGAACC
1._GU_147_/H
__AATTTT_AACCGGCC__AA_
2._GU_147_/H
__AATTTT_AACCGGCC__AA_
3._GU_147_/H
__AATTTT_AACCGGCC__AA_
4._GU_147_/H
___TTTT_AACCGGCC__AA_
5._GU_147_/H
__AATTTT_AACCGGCC__AA_
6._GU_147_/H
__AATTTT_AACCGGCC__AA_
7._GU_147_/H
__AATTTT_AACCGGCC__AA_
8._GU_147_/H
__AATTTT_AACCGGCC__AA_
9._GU_147_/H
__AATTTT_AACCGGCC__AA_
10._RUQ_222
__AATTTT_AACCGGCC__AA_
11._GC-01-080-4-16
TTCCAATTTTGGAACCGGCCGGGGAACC
12._GC-01-080-4-16
TTCCAATTTTGGAACCGGCCGGGGAACC
13._GC-01-080-4-16
TTCCAATTTTGGAACCGGCCGGGGAACC
14._GC-01-080-4-16
TTCCAATTTTGGAACCGGCCGGGGAACC
15._GC-01-080-4-16
TTCCAATTTTGGAACCGGCCGGGGAACC
16._GC-01-080-4-16
TTCCAATTTTGGAACCGGCCGGGGAACC
17._GC-01-080-4-16
TTCCAATTTTGGAACCGGCCGGGGAACC
18._GC-01-080-4-16
TTCCAATTTTGGAACCGGCCGGGGAACC
19._GC-01-080-4-16
TTCC_TTTTGGAACCGGCCGGGGAACC
20._GC-01-80-4-16
AACCAAAAAAGGAAGGGGGGGGGGAAGG
21._RUQ_222
AACCAAAAAAGGAAGGGGGGGGGGAAGG
 1516171819202122232425262728
_Input profile
GGAACCGGCCAACCCTCCGGAATTAAGG
1._GU_147_/H
GGAACCGGCCAA_CT_GG___GG
2._GU_147_/H
GGAACCGGCCAA_CT_GG___GG
3._GU_147_/H
GGAACCGGCCAA_CT_GG___GG
4._GU_147_/H
GGAACCGGCCAA_CT_GG___GG
5._GU_147_/H
GGAACCGGCCAA_CT_GG___GG
6._GU_147_/H
GGAACCGGCCAA_CT_GG___GG
7._GU_147_/H
GGAACCGGCCAA_CT_GG___GG
8._GU_147_/H
GGAACCGGCCAA_CT_GG___GG
9._GU_147_/H
GGAACCGGCCAA_CT_GG___GG
10._RUQ_222
GGAACCGGCCAA_CT_GG___GG
11._GC-01-080-4-16
GGAACCGGCCAACCCTCTGGAATTAAGG
12._GC-01-080-4-16
GGAACCGGCCAACCCTCTGGAATTAAGG
13._GC-01-080-4-16
GGAACCGGCCAACCCTCTGGAATTAAGG
14._GC-01-080-4-16
GGAACCGGCCAACCCTCTGGAATTAAGG
15._GC-01-080-4-16
GGAACCGGCCAACCCTCTGGAATTAAGG
16._GC-01-080-4-16
GGAACCGGCCAACCCTCTGGAATTAAGG
17._GC-01-080-4-16
GGAACCGGCCAACCCTCTGGAATTAAGG
18._GC-01-080-4-16
GGAACCGGCCAACCCTCTGGAATTAAGG
19._GC-01-080-4-16
GGAACCGGCCAACCCTCTGGAATTAAGG
20._GC-01-80-4-16
_AA_CCCCAAGGAG_CCAAAAAACC
21._RUQ_222
_AA_CCCCCCGGGG_CCAAAAAACC
 2930313233343536373839404142
_Input profile
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
1._GU_147_/H
_CCGG_CC___TT__CCCCGG
2._GU_147_/H
_CCGG_CC___TT__CCCCGG
3._GU_147_/H
_CCGG_CC___TT__CCCCGG
4._GU_147_/H
_CCGG_CC___TT__CCCCGG
5._GU_147_/H
_CCGG_CC___TT__CCCCGG
6._GU_147_/H
_CCGG_CC___TT__CCCCGG
7._GU_147_/H
_CCGG_CC___TT__CCCCGG
8._GU_147_/H
_CCGG_CC___TT__CCCCGG
9._GU_147_/H
_CCGG_CC___TT__CCCCGG
10._RUQ_222
_CCGG_CC___TT__CCCCGG
11._GC-01-080-4-16
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
12._GC-01-080-4-16
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
13._GC-01-080-4-16
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
14._GC-01-080-4-16
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
15._GC-01-080-4-16
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
16._GC-01-080-4-16
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
17._GC-01-080-4-16
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
18._GC-01-080-4-16
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
19._GC-01-080-4-16
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
20._GC-01-80-4-16
_GGGG_GGCCGG_AAAAGGGGGGGG
21._RUQ_222
_GGAG_GGCCGG_AAAAGGGGCCAG

Input profile: GU_147_/H RUQ_222

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._GU_147_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 5 > FP
 Dapeng Zhang, 2016

2._GU_147_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

3._GU_147_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 14 > F
 Dapeng Zhang, 2016

4._GU_147_/H

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 1 > FP
 Dapeng Zhang, 2016

5._GU_147_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 16
 Dapeng Zhang, 2016

6._GU_147_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 13
 Dapeng Zhang, 2016

7._GU_147_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 12
 Dapeng Zhang, 2016

8._GU_147_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 7
 Dapeng Zhang, 2016

9._GU_147_/H

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 15 > F
 Dapeng Zhang, 2016

10._GU_147_/H RUQ_222

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

11._GU_147_/H GC-01-080-4-16

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

12._GU_147_/H GC-01-080-4-16

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._GU_147_/H GC-01-080-4-16

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

14._GU_147_/H GC-01-080-4-16

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

15._GU_147_/H GC-01-080-4-16

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

16._GU_147_/H GC-01-080-4-16

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

17._GU_147_/H GC-01-080-4-16

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

18._GU_147_/H GC-01-080-4-16

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

19._GU_147_/H GC-01-080-4-16

98.8 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

20._GU_147_/H GC-01-80-4-16

44.4 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 16, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

21._GU_147_/H RUQ_222

41.7 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

 Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484