SNP Profiles of GU 144 /C   View Data

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 Key

 1234567891011121314
_Input profile
TTCCAATTTTGGAACCGGCCGGGGAACC
1._GU_144_/C
__AATTTT_AACCGGCC__AA_
2._GU_144_/C
__AATTTT_AACCGGCC__AA_
3._GU_144_/C
__AATTTT_AACCGGCC__AA_
4._GU_144_/C
__AATTTT_AACCGGCC__AA_
5._GU_144_/C
__AATTTT_AACCGGCC__AA_
6._GU_144_/C
__AATTTT_AACCGGCC__AA_
7._GU_144_/C
__AATTTT_AACCGGCC__AA_
8._GU_144_/C
__AATTTT_AACCGGCC__AA_
9._GU_144_/C
__AATTTT_AACCGGCC__AA_
10._GU_144_/C
__AATTTT_AACCGGCC__AA_
11._GU_144_/C
__AATTTT_AACCGGCC__AA_
12._GU_144_/C
__AATTTT_AACCGGCC__AA_
13._GU_144_/C
__AATTTT_AACCGGCC__AA_
14._GU_144_/C
__AATTTT_AACCGGCC__AA_
15._GU_144_/C
__AATTTT_AACCGGCC__AA_
16._GU_144_/C
__AATTTT_AACCGGCC__AA_
17._GU_144_/C
__AATTTT_AACCGGCC__AA_
18._RUQ_191
__AATTTT_AACCGGCC__AA_
19._GU_144_/C
__AATTTT_AACCGGCC__AA_
20._GC-01-073-4-09
TTCCAATTTTGGAACCGGCCGGGGAACC
21._GC-08-224-6-20
TTCCAATTTTGGAACCGGCCGGGGAACC
22._GC-08-224-6-20
TTCCAATTTTGGAACCGGCCGGGGAACC
23._GC-08-224-6-20
TTCCAATTTTGGAACCGGCCGGGGAACC
24._GC-08-224-6-20
TTCCAATTTTGGAACCGGCCGGGGAACC
25._GC-08-223-6-19
TTCCAATTTTGGAACCGGCCGGGGAACC
26._GC-01-073-4-09
TTCCAATTTTGGAACCGGCCGGGGAACC
27._GC-01-073-4-09
TTCCAATTTTGGAACCGGCCGGGGAACC
28._GC-01-073-4-09
TTCCAATTTTGGAACCGGCCGGGGAACC
29._GC-01-073-4-09
TTCCAATTTTGGAACCGGCCGGGGAACC
30._GC-01-073-4-09
TTCCAATTTTGGAACCGGCCGGGGAACC
31._GC-01-073-4-09
TTCCAATTTTGGAACCGGCCGGGGAACC
32._GC-08-223-6-19
TTCCAATTTTGGAACCGGCCGGGGAACC
33._GC-08-223-6-19
TTCCAATTTTGGAACCGGCCGGGGAACC
34._GC-01-073-4-09
TTCCAATTTTGGAACCGGCCGGGGAACC
35._GC-08-223-6-19
TTCCAATTTTGGAACCGGCCGGGGAACC
36._GC-08-223-6-19
TTCCAATTTTGGAACCGGCCGGGGAACC
37._GC-08-223-6-19
TTCCAATTTTGGAACCGGCCGGGGAACC
38._GU_144_/C
__AATTTT_AACCGGCC__AA_
39._GU_144_/C
__AATTTT_AACCGGCC__AA_
40._GU_144_/C
__AATTTT_AACCGGCC__AA_
41._GC-01-073-4-09
TTCCAATTTTGGAACCGGCCGGGGAACC
42._GC-08-224-6-20
TTCCAATTTTGGAACCGGCCGGGGAACC
43._GC-01-073-4-09
TTCCAATTTTGGAACCGGCCGGGGAACC
44._GU_144_/C
__ACGT__ACCCAACC__AA_
45._GU_144_/C
__CCGGTT_ACCCAATT__AA_
46._GC-08-223-6-19
TTCCACGT_GGACCCAACCGGGGAACG
47._GC-08-224-6-20
TTCCCCGGTTGGACCCAATTAGGGAACG
48._GC-01-73-4-9
AACCAAAAAAGGAAGGGGGGGGGGAAGG
49._GC-01-73-4-9
AACCAAAAAAGGAAGGGGGGGGGGAAGG
50._RUQ_191
AACCAAAAAAGGAAGGGGGGGGGGAAGG
51._MITC-000578
AACCAAAAAAGGAAGGGGGGGGGGAAGG
52._MITC-000615
AACCAAAAAAGGAAGGGGGGGGGGAAGG
53._GC-01-73-4-9
AACCAAAAAAGGAAGGGGGGGGGGAAGG
 1516171819202122232425262728
_Input profile
GGAACCGGCCCCCCCCCCGGAATTAAGG
1._GU_144_/C
GGAACCGGCCCC_CC_GG___GG
2._GU_144_/C
GGAACCGGCCCC_CC_GG___GG
3._GU_144_/C
GGAACCGGCCCC_CC_GG___GG
4._GU_144_/C
GGAACCGGCCCC_CC_GG___GG
5._GU_144_/C
GGAACCGGCCCC_CC_GG___GG
6._GU_144_/C
GGAACCGGCCCC_CC_GG___GG
7._GU_144_/C
GGAACCGGCCCC_CC_GG___GG
8._GU_144_/C
GGAACCGGCCCC_CC_GG___GG
9._GU_144_/C
GGAACCGGCCCC_CC_GG___GG
10._GU_144_/C
GGAACCGGCCCC_CC_GG___GG
11._GU_144_/C
GGAACCGGCCCC_CC_GG___GG
12._GU_144_/C
GGAACCGGCCCC_CC_GG___GG
13._GU_144_/C
GGAACCGGCCCC_CC_GG___GG
14._GU_144_/C
GGAACCGGCCCC_CC_GG___GG
15._GU_144_/C
GGAACCGGCCCC_CC_GG___GG
16._GU_144_/C
GGAACCGGCCCC_CC_GG___GG
17._GU_144_/C
GGAACCGGCCCC_CC_GG___GG
18._RUQ_191
GGAACCGGCCCC_CC_GG___GG
19._GU_144_/C
GGAACCGGCCCC_CC_GG___GG
20._GC-01-073-4-09
GGAACCGGCCCCCCCCTTGGAATTAAGG
21._GC-08-224-6-20
GGAACCGGCCCCCCCCTTGGAATTAAGG
22._GC-08-224-6-20
GGAACCGGCCCCCCCCTTGGAATTAAGG
23._GC-08-224-6-20
GGAACCGGCCCC_CCTTGGAATTAAGG
24._GC-08-224-6-20
GGAACCGGCCCCCCCCTTGGAATTAAGG
25._GC-08-223-6-19
GGAACCGGCCCCCCCCTTGGAATTAAGG
26._GC-01-073-4-09
GGAACCGGCCCCCCCCTTGGAATTAAGG
27._GC-01-073-4-09
GGAACCGGCCCCCCCCTTGGAATTAAGG
28._GC-01-073-4-09
GGAACCGGCCCCCCCCTTGGAATTAAGG
29._GC-01-073-4-09
GGAACCGGCCCCCCCCTTGGAATTAAGG
30._GC-01-073-4-09
GGAACCGGCCCCCCCCTTGGAATTAAGG
31._GC-01-073-4-09
GGAACCGGCCCCCCCCTTGGAATTAAGG
32._GC-08-223-6-19
GGAACCGGCCCCCCCCTTGGAATTAAGG
33._GC-08-223-6-19
GGAACCGGCCCCCCCCTTGGAATTAAGG
34._GC-01-073-4-09
GGAACCGGCCCCCCCCTTGGAATTAAGG
35._GC-08-223-6-19
GGAACCGGCCCCCCCCTTGGAATTAAGG
36._GC-08-223-6-19
GGAACCGGCCCCCCCCTTGGAA_AAGG
37._GC-08-223-6-19
GGAACCGGCCCCCCCCTTGGAATTAAGG
38._GU_144_/C
AGAACCGGCCAC_CC_GG___GG
39._GU_144_/C
AGAACCGGCCAC_CC_GG___GG
40._GU_144_/C
AGAACCGGCCAC_CC_GG___GG
41._GC-01-073-4-09
AGAACCGGCCACCCCCCTGGAATTAAGG
42._GC-08-224-6-20
AGAACCGGCCACCCCCCTGGAATTAAGG
43._GC-01-073-4-09
AGAACCGGCCACCCCCCTGGAATTAAGG
44._GU_144_/C
AACCTTTTCCAC_TT_GG___GG
45._GU_144_/C
AGACCTGGGGAC_TT_GG___CC
46._GC-08-223-6-19
AACCTTTTCCACCTTTCTGGGGTTAAGG
47._GC-08-224-6-20
AGACCTGGGGACCCTTCTGGAGTTCCCC
48._GC-01-73-4-9
_AA_CCCCCCGGGG_CCAAAAAACC
49._GC-01-73-4-9
_AA_CCCCCCGGGG_CCAAAAAACC
50._RUQ_191
_AA_CCCCCCGGGG_CCAAAAAACC
51._MITC-000578
_AA_CCCCCCGGGG_CCAAAAAACC
52._MITC-000615
_AA_CCCCCCGGGG_CCAAAAAACC
53._GC-01-73-4-9
_AA_CCCCACGGGG_CCAAAAAACC
 2930313233343536373839404142
_Input profile
CCCCAACCCCGGGGTTTTCTCCCCGGGG
1._GU_144_/C
_CCAA_CC___TT__CCGGGG
2._GU_144_/C
_CCAA_CC___TT__CCGGGG
3._GU_144_/C
_CCAA_CC___TT__CCGGGG
4._GU_144_/C
_CCAA_CC___TT__CCGGGG
5._GU_144_/C
_CCAA_CC___TT__CCGGGG
6._GU_144_/C
_CCAA_CC___TT__CCGGGG
7._GU_144_/C
_CCAA_CC___TT__CCGGGG
8._GU_144_/C
_CCAA_CC___TT__CCGGGG
9._GU_144_/C
_CCAA_CC___TT__CCGGGG
10._GU_144_/C
_CCAA_CC___TT__CCGGGG
11._GU_144_/C
_CCAA_CC___TT__CCGGGG
12._GU_144_/C
_CCAA_CC___TT__CCGGGG
13._GU_144_/C
_CCAA_CC___TT__CCGGGG
14._GU_144_/C
_CCAA_CC___TT__CCGGGG
15._GU_144_/C
_CCAA_CC___TT__CCGGGG
16._GU_144_/C
_CCAA_CC___TT__CCGGGG
17._GU_144_/C
_CCAA_CC___TT__CCGGGG
18._RUQ_191
_CCAA_CC___TT__CCGGGG
19._GU_144_/C
_CCAA_CC___TT__CCGGGG
20._GC-01-073-4-09
CCCCAACCCCGGGGTTTTTTCCCCGGGG
21._GC-08-224-6-20
CCCCAACCCCGGGGTTTTTTCCCCGGGG
22._GC-08-224-6-20
CCCCAACCCCGGGGTTTTTTCCCCGGGG
23._GC-08-224-6-20
CCCCAACCCCGGGGTTTTTTCCCCGGGG
24._GC-08-224-6-20
CCCCAACCCCGGGGTTTTTTCCCCGGGG
25._GC-08-223-6-19
CCCCAACCCCGGGGTTTTTTCCCCGGGG
26._GC-01-073-4-09
CCCCAACCCCGGGGTTTTTTCCCCGGGG
27._GC-01-073-4-09
CCCCAACCCCGGGGTTTTTTCCCCGGGG
28._GC-01-073-4-09
CCCCAACCCCGGGGTTTTTTCCCCGGGG
29._GC-01-073-4-09
CCCCAACCCCGGGGTTTTTTCCCCGGGG
30._GC-01-073-4-09
CCCCAACCCCGGGGTTTTTTCCCCGGGG
31._GC-01-073-4-09
CCCCAACCCCGGGGTTTTTTCCCCGGGG
32._GC-08-223-6-19
CCCCAACCCCGGGGTTTTTTCCCCGGGG
33._GC-08-223-6-19
CCCCAACCCCGGGGTTTTTTCCCCGGGG
34._GC-01-073-4-09
CCCCAACCCCGGGGTTTTTTCCCCGGGG
35._GC-08-223-6-19
CCCCAACCCCGGGGTTTTTTCCCCGGGG
36._GC-08-223-6-19
CCCCAACCCCGGGGTTTTTTCCCCGGGG
37._GC-08-223-6-19
CCCCAACCCCGGGGTTTTTTCCCCGGGG
38._GU_144_/C
_CCGG_CC___TT__CCCGGG
39._GU_144_/C
_CCGG_CC___TT__CCCGGG
40._GU_144_/C
_CCGG_CC___TT__CCCGGG
41._GC-01-073-4-09
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
42._GC-08-224-6-20
_CCGGCCCCGGGGTTTTTTCCCCCGGG
43._GC-01-073-4-09
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
44._GU_144_/C
_CCGG_CC___TT__CCGGAA
45._GU_144_/C
_CTAG_CC___GT__TTCCAA
46._GC-08-223-6-19
CCCCGGCTCCGGGGTTTTTTCTCCGGAA
47._GC-08-224-6-20
CGCTAGCTCCGGGGTTGTTTCCTTCCAA
48._GC-01-73-4-9
_GGAA_GGCCGG_AAAGGGGGCCGG
49._GC-01-73-4-9
_GGAA_GGCCGG_AAAGGGGGCCGG
50._RUQ_191
_GGAA_GGCCGG_AAAGGGGGCCGG
51._MITC-000578
_GGAA_GGCCGG_AAAGGGGGCCGG
52._MITC-000615
_GGAA_GGCCGG_AAAGGGGGCCGG
53._GC-01-73-4-9
_GGGG_GGCCGG_AAAGGGGGCGGG

Input profile: GU_144_/C RUQ_191

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8619 5
 Dapeng Zhang, 2016

2._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8619 2
 Dapeng Zhang, 2016

3._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8620 2
 Dapeng Zhang, 2016

4._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8620 1
 Dapeng Zhang, 2016

5._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8619 3 > FP
 Dapeng Zhang, 2016

6._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8619 9
 Dapeng Zhang, 2016

7._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1409 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8619 7
 Dapeng Zhang, 2016

9._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8619 10
 Dapeng Zhang, 2016

10._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1409 5 > FP
 Dapeng Zhang, 2016

11._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8620 8
 Dapeng Zhang, 2016

12._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1409 12 > F
 Dapeng Zhang, 2016

13._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1409 1 > FP
 Dapeng Zhang, 2016

14._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1409 13
 Dapeng Zhang, 2016

15._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1409 10
 Dapeng Zhang, 2016

16._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1409 8
 Dapeng Zhang, 2016

17._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1409 6
 Dapeng Zhang, 2016

18._GU_144_/C RUQ_191

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

19._GU_144_/C

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8620 3
 Dapeng Zhang, 2016

20._GU_144_/C GC-01-073-4-09

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

21._GU_144_/C GC-08-224-6-20

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._GU_144_/C GC-08-224-6-20

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

23._GU_144_/C GC-08-224-6-20

95.1 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

24._GU_144_/C GC-08-224-6-20

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

25._GU_144_/C GC-08-223-6-19

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

26._GU_144_/C GC-01-073-4-09

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

27._GU_144_/C GC-01-073-4-09

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

28._GU_144_/C GC-01-073-4-09

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

29._GU_144_/C GC-01-073-4-09

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

30._GU_144_/C GC-01-073-4-09

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

31._GU_144_/C GC-01-073-4-09

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

32._GU_144_/C GC-08-223-6-19

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

33._GU_144_/C GC-08-223-6-19

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

34._GU_144_/C GC-01-073-4-09

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

35._GU_144_/C GC-08-223-6-19

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

36._GU_144_/C GC-08-223-6-19

95.1 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

37._GU_144_/C GC-08-223-6-19

95.2 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

38._GU_144_/C

89.6 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1409 9
 Dapeng Zhang, 2016

39._GU_144_/C

89.6 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1409 3
 Dapeng Zhang, 2016

40._GU_144_/C

89.6 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8620 7
 Dapeng Zhang, 2016

41._GU_144_/C GC-01-073-4-09

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

42._GU_144_/C GC-08-224-6-20

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

43._GU_144_/C GC-01-073-4-09

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

44._GU_144_/C

56.5 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8619 1 > FP
 Dapeng Zhang, 2016

45._GU_144_/C

41.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8620 5
 Dapeng Zhang, 2016

46._GU_144_/C GC-08-223-6-19

64.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

47._GU_144_/C GC-08-224-6-20

54.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

48._GU_144_/C GC-01-73-4-9

44.4 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

49._GU_144_/C GC-01-73-4-9

44.4 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

50._GU_144_/C RUQ_191

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

51._GU_144_/C MITC-000578

44.4 %
36 shared markers

USDA-SHRS, United States of America
 Mars, 2018

52._GU_144_/C MITC-000615

44.4 %
36 shared markers

USDA-SHRS, United States of America
 Mars, 2018

53._GU_144_/C GC-01-73-4-9

41.7 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

 

 Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484