SNP Profiles of GU%20125%20/C   View Data

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 Key

 1234567891011121314
_Input profile
TTCCAATTTTGGAACCGGCCGGGGAACC
1._RUQ_188
__AATTTT_AACCGGCC__AA_
2._RUQ_188
__AA_____GG_GG___
3._RUQ_188
__AAGTTT_AACCGGCC__AA_
4._GC-01-138-7-17
TTCCAATTTTGGAACCGGCCGGGGAACC
5._GC-01-138-7-17
TTCCAATTTTGGAACCGGCCGGGGAACC
6._GC-01-138-7-17
TTCCAATTTTGGAACCGGCCGGGGAACC
7._GC-01-138-7-17
TTCCAATTTTGGAACCGGCCGGGGAACC
8._GC-01-138-7-17
TTCCAATTTTGGAACCGGCCGGGGAACC
9._GC-01-138-7-17
TTCCAATTTTGGAACCGGCCGGGGAACC
10._GU_125_/C
__AATTTT_AACCGGCC__AA_
11._GU_125_/C
__AATTTT_AACCGGCC__AA_
12._GU_125_/C
__AATTTT_AACCGGCC__AA_
13._GU_125_/C
__AATTTT_AACCGGCC__AA_
14._GU_125_/C
__AATTTT_AACCGGCC__AA_
15._GU_125_/C
__AATTTT_AACCGGCC__AA_
16._GU_125_/C
__AATTTT_AACCGGCC__AA_
17._RUQ_188
AACCAAAAAAGGAAGGGGGGGGGGAAGG
18._GC-01-138-7-17
AACCAAAAAAGGAAGGGGGGGGGGAAGG
 1516171819202122232425262728
_Input profile
GGAACCGGCCACCCCCCCGGAATTAAGG
1._RUQ_188
GGAACCGGCCAC_CC_GG___GG
2._RUQ_188
_AA__CCACCC_CCGGAA_AAGG
3._RUQ_188
GGAACCGGCCAC_CC_GG___GG
4._GC-01-138-7-17
GGAACCGGCCCCCCCCCCGGAATTAAGG
5._GC-01-138-7-17
GGAACCGGCCCCCCCCCCGGAATTAAGG
6._GC-01-138-7-17
GGAACCGGCCCCCCCCCCGGAATTAAGG
7._GC-01-138-7-17
GGAACCGGCCCCCCCCCCGGAATTAAGG
8._GC-01-138-7-17
GGAACCGGCCCCCCCCCCGGAATTAAGG
9._GC-01-138-7-17
GGAACC_CCCCCCCCCCGGAATTAAGG
10._GU_125_/C
GGAACCGGCCCC_CC_GG___GG
11._GU_125_/C
GGAACCGGCCCC_CC_GG___GG
12._GU_125_/C
GGAACCGGCCCC_CC_GG___GG
13._GU_125_/C
GGAACCGGCCCC_CC_GG___GG
14._GU_125_/C
GGAACCGGCCCC_CC_GG___GG
15._GU_125_/C
GGAACCGGCCCC_CC_GG___GG
16._GU_125_/C
GGAACC_CCCC_CC_GG___GG
17._RUQ_188
_AA_CCCCACGGGG_CCAAAAAACC
18._GC-01-138-7-17
_AA_CCCCCCGGGG_CCAAAAAACC
 2930313233343536373839404142
_Input profile
CCCCAGCCCCGGGGTTTTTTCCCCCGGG
1._RUQ_188
_CCAG_CC___TT__CCCGGG
2._RUQ_188
__AGCC____TT___CG_
3._RUQ_188
_CCAG_CC___TT__CCCGGG
4._GC-01-138-7-17
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
5._GC-01-138-7-17
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
6._GC-01-138-7-17
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
7._GC-01-138-7-17
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
8._GC-01-138-7-17
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
9._GC-01-138-7-17
CCCCGGCCCCGGGGTTTTTTCCCCCCGG
10._GU_125_/C
_CCGG_CC___TT__CCCCGG
11._GU_125_/C
_CCGG_CC___TT__CCCCGG
12._GU_125_/C
_CCGG_CC___TT__CCCCGG
13._GU_125_/C
_CCGG_CC___TT__CCCCGG
14._GU_125_/C
_CCGG_CC___TT__CCCCGG
15._GU_125_/C
_CCGG_CC___TT__CCCCGG
16._GU_125_/C
_CCGG_CC___TT__CCCCGG
17._RUQ_188
_GGAG_GGCCGG_AAAAGGGGCGGG
18._GC-01-138-7-17
_GGGG_GGCCGG_AAAAGGGGGGGG

Input profile: GU_125_/C RUQ_188

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._GU_125_/C RUQ_188

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._GU_125_/C RUQ_188

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._GU_125_/C RUQ_188

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._GU_125_/C GC-01-138-7-17

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

5._GU_125_/C GC-01-138-7-17

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._GU_125_/C GC-01-138-7-17

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._GU_125_/C GC-01-138-7-17

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

8._GU_125_/C GC-01-138-7-17

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._GU_125_/C GC-01-138-7-17

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

10._GU_125_/C

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 4 > FP
 Dapeng Zhang, 2016

11._GU_125_/C

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 10 > F
 Dapeng Zhang, 2016

12._GU_125_/C

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 1 > FP
 Dapeng Zhang, 2016

13._GU_125_/C

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 9
 Dapeng Zhang, 2016

14._GU_125_/C

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

15._GU_125_/C

93.8 %
24 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: Q6_EXT_2 20
 Dapeng Zhang, 2016

16._GU_125_/C

93.5 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 11
 Dapeng Zhang, 2016

17._GU_125_/C RUQ_188

47.2 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

18._GU_125_/C GC-01-138-7-17

43.1 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 7, Rep: 17, Tree: 3
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484