SNP Profiles of GU 125 /C View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
1._RUQ_188	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
2._RUQ_188	_	_	AA	GT	TT	_	AA	CC	GG	CC	_	_	AA	_
3._GU_125_/C	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
4._GU_125_/C	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
5._GU_125_/C	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
6._GU_125_/C	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
7._GU_125_/C	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
8._GU_125_/C	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
9._GC-01-138-7-17	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
10._GC-01-138-7-17	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
11._GC-01-138-7-17	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
12._GC-01-138-7-17	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
13._GC-01-138-7-17	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
14._GC-01-138-7-17	TT	CC	AA	TT	TT	GG	AA	CC	GG	CC	GG	GG	AA	CC
15._GU_125_/C	_	_	AA	TT	TT	_	AA	CC	GG	CC	_	_	AA	_
16._RUQ_188	AA	CC	AA	AA	AA	GG	AA	GG	GG	GG	GG	GG	AA	GG
17._GC-01-138-7-17	AA	CC	AA	AA	AA	GG	AA	GG	GG	GG	GG	GG	AA	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	AA	CC	GG	CC	AC	CC	CC	CC	GG	AA	TT	AA	GG
1._RUQ_188	GG	AA	CC	GG	CC	AC	_	CC	_	GG	_	_	_	GG
2._RUQ_188	GG	AA	CC	GG	CC	AC	_	CC	_	GG	_	_	_	GG
3._GU_125_/C	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
4._GU_125_/C	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
5._GU_125_/C	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
6._GU_125_/C	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
7._GU_125_/C	GG	AA	CC	_	CC	CC	_	CC	_	GG	_	_	_	GG
8._GU_125_/C	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
9._GC-01-138-7-17	GG	AA	CC	_	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
10._GC-01-138-7-17	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
11._GC-01-138-7-17	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
12._GC-01-138-7-17	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
13._GC-01-138-7-17	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
14._GC-01-138-7-17	GG	AA	CC	GG	CC	CC	CC	CC	CC	GG	AA	TT	AA	GG
15._GU_125_/C	GG	AA	CC	GG	CC	CC	_	CC	_	GG	_	_	_	GG
16._RUQ_188	_	AA	_	CC	CC	AC	GG	GG	_	CC	AA	AA	AA	CC
17._GC-01-138-7-17	_	AA	_	CC	CC	CC	GG	GG	_	CC	AA	AA	AA	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	AG	CC	CC	GG	GG	TT	TT	TT	CC	CC	CG	GG
1._RUQ_188	_	CC	AG	_	CC	_	_	_	TT	_	_	CC	CG	GG
2._RUQ_188	_	CC	AG	_	CC	_	_	_	TT	_	_	CC	CG	GG
3._GU_125_/C	_	CC	GG	_	CC	_	_	_	TT	_	_	CC	CC	GG
4._GU_125_/C	_	CC	GG	_	CC	_	_	_	TT	_	_	CC	CC	GG
5._GU_125_/C	_	CC	GG	_	CC	_	_	_	TT	_	_	CC	CC	GG
6._GU_125_/C	_	CC	GG	_	CC	_	_	_	TT	_	_	CC	CC	GG
7._GU_125_/C	_	CC	GG	_	CC	_	_	_	TT	_	_	CC	CC	GG
8._GU_125_/C	_	CC	GG	_	CC	_	_	_	TT	_	_	CC	CC	GG
9._GC-01-138-7-17	CC	CC	GG	CC	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG
10._GC-01-138-7-17	CC	CC	GG	CC	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG
11._GC-01-138-7-17	CC	CC	GG	CC	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG
12._GC-01-138-7-17	CC	CC	GG	CC	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG
13._GC-01-138-7-17	CC	CC	GG	CC	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG
14._GC-01-138-7-17	CC	CC	GG	CC	CC	GG	GG	TT	TT	TT	CC	CC	CC	GG
15._GU_125_/C	_	CC	GG	_	CC	_	_	_	TT	_	_	CC	CC	GG
16._RUQ_188	_	GG	AG	_	GG	CC	GG	_	AA	AA	GG	GG	CG	GG
17._GC-01-138-7-17	_	GG	GG	_	GG	CC	GG	_	AA	AA	GG	GG	GG	GG

Input profile: GU_125_/C RUQ_188

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._GU_125_/C RUQ_188

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._GU_125_/C RUQ_188

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._GU_125_/C

87.5 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1717 4 > FP

Dapeng Zhang, 2016

4._GU_125_/C

87.5 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1717 9

Dapeng Zhang, 2016

5._GU_125_/C

87.5 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1717 10 > F

Dapeng Zhang, 2016

6._GU_125_/C

87.5 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1717 1 > FP

Dapeng Zhang, 2016

7._GU_125_/C

87 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1717 11

Dapeng Zhang, 2016

8._GU_125_/C

87.5 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1717 3

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._GU_125_/C GC-01-138-7-17

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

10._GU_125_/C GC-01-138-7-17

92.9 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

11._GU_125_/C GC-01-138-7-17

92.9 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

12._GU_125_/C GC-01-138-7-17

92.9 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

13._GU_125_/C GC-01-138-7-17

92.9 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

14._GU_125_/C GC-01-138-7-17

92.9 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

15._GU_125_/C

87.5 %
24 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: Q6_EXT_2 20

Dapeng Zhang, 2016

16._GU_125_/C RUQ_188

47.2 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

17._GU_125_/C GC-01-138-7-17

38.9 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 7, Rep: 17, Tree: 3

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484