SNP Profiles of GU 221 /H   View Data

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 Key

 1234567891011121314
_Input profile
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
1._GC-01-74-4-10
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
2._GU_221_/H
_____CCGG_AA_____
3._GU_221_/H
_____CCGG_AA_____
4._GU_221_/H
_____CCGG_AA_____
5._GU_221_/H
_____CCGG_AA_____
6._GU_221_/H
_____CCGG_AA_____
7._GU_221_/H
_____CCGG_AA_____
8._GU_221_/H
_____CCGG_AA_____
9._GU_221_/H
_____CCGG_AT_____
10._GC-01-074-4-10
CCAAAGCCTTCCGGGGAACCGGTTCCTT
11._GC-01-074-4-10
CCAAAGCCTTCCGGGGAACCGGTTCCTT
12._GC-01-074-4-10
CCAAAGCCTTCCGGGGAACCGGTTCCTT
13._GC-01-074-4-10
CCAAAGCCTTCCGGGGAACCGGTTCCTT
14._GC-01-074-4-10
CCAAAGCCTTCCGGGGAACCGGTTCCTT
15._GC-01-074-4-10
CCAAAGCCTTCCGGGGAACCGGTTCCTT
16._GC-01-074-4-10
CCAAAGCCTTCCGGGGAACCGGTTCCTT
17._GC-01-074-4-10
CCCCGGCCTTCCGGGGATTTAACCCCTT
 1516171819202122232425262728
_Input profile
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
1._GC-01-74-4-10
AAAAAAAG_GGAAGGAAGGCCAGAAAA
2._GU_221_/H
_TTTT___TT_AACCGGAGTTTT
3._GU_221_/H
_TTTT___TT_AACCGGAGTTTT
4._GU_221_/H
_TTTT___TT_AACCGGAGTTTT
5._GU_221_/H
_TTTT___TT_AACCGGAGTTTT
6._GU_221_/H
_TTTT___TT_AACCGGAGTTTT
7._GU_221_/H
_TTTT___TT_AACCGGAGTTTT
8._GU_221_/H
_TTTT___TT_AACCGGAGTTTT
9._GU_221_/H
_GTTT_AA_TT_ACCCCCAGGGTT
10._GC-01-074-4-10
TTTTTTTT_GGTTCCAACCGGAGTTTT
11._GC-01-074-4-10
TTTTTT__GGTTCCAACCGGAGTTTT
12._GC-01-074-4-10
TTTTTTTT_GGTTCCAACCGGAGTTTT
13._GC-01-074-4-10
TTTTTTTT_GGTTCCAACCGGAGTTTT
14._GC-01-074-4-10
TTTTTTTT_GGTTCCAACCGGAGTTTT
15._GC-01-074-4-10
TTTTTTTT_GGTTCCAACCGGAGTTTT
16._GC-01-074-4-10
TTTTTTTT_GGTTCCAACCGGAGTTTT
17._GC-01-074-4-10
TTGTTTTTAAAGTTCCACCCCCAGGGTT
 2930313233343536373839404142
_Input profile
GGTTGGAAGGGGGGGGGGCCTTAAAGGG
1._GC-01-74-4-10
GGTTGGAAGGGGGGGGGGCCTTAAAGGG
2._GU_221_/H
CC__AACCGG_CCGG__AA__
3._GU_221_/H
CC__AACCGG_CCGG__AA__
4._GU_221_/H
CC__AACCGG_CCGG__AA__
5._GU_221_/H
CC__AACCGG_CCGG__AA__
6._GU_221_/H
CC__AACCGG_CCGG__AA__
7._GU_221_/H
CC__AACCGG_CCGG__AA__
8._GU_221_/H
CC__AACCGG_CCGG__AA__
9._GU_221_/H
CC__CCCGGG_TTGG__AA__
10._GC-01-074-4-10
CCAAGGAACCGGGGCCGGGGAAAAAGGG
11._GC-01-074-4-10
CCAAGGAACCGGGGCCGGGGAAAAAGGG
12._GC-01-074-4-10
CCAAGGAACCGGGGCCGGGGAAAAAGGG
13._GC-01-074-4-10
CCAAGGAACCGGGGCCGGGGAAAAAGGG
14._GC-01-074-4-10
CCAAGGAACCGGGGCCGGGGAAAAAGGG
15._GC-01-074-4-10
CCAAGGAACCGGGGCCGGGGAAAAAGGG
16._GC-01-074-4-10
CCAAGGAACCGGGGCCGGGGAAAAAGGG
17._GC-01-074-4-10
CCTTGGCCCGGGGGTTGGTTAAAAAAGG
 4344454647484950515253545556
_Input profile
AAAGGGGGGGTTGGAACCAAGGCCGGCC
1._GC-01-74-4-10
AAAGGGGGGGTTGGAACCAAGGCCGGCC
2._GU_221_/H
AA___GG____AA_GG_CC
3._GU_221_/H
AA___GG____AA_GG_CC
4._GU_221_/H
AA___GG____AA_GG_CC
5._GU_221_/H
AA___GG____AA_GG_CC
6._GU_221_/H
AA___GG____AA_GG_CC
7._GU_221_/H
AA___GG____AA_GG_CC
8._GU_221_/H
AA___GG____AA_GG_CC
9._GU_221_/H
AA___GG____AC_GG_GG
10._GC-01-074-4-10
AACTGGGGGGTTCC_CCAAGGGGGGCC
11._GC-01-074-4-10
AACTGGGGGGTTCC_CCAAGGGGGGCC
12._GC-01-074-4-10
AACTGGGGGGTTCC_CCAAGGGGGGCC
13._GC-01-074-4-10
AACTGGGGGGTTCC_CCAAGGGGGGCC
14._GC-01-074-4-10
AACTGGGGGGTTCC_CCAAGGGGGGCC
15._GC-01-074-4-10
AACTGGGGGGTTCC_CCAAGGGGGGCC
16._GC-01-074-4-10
AACTGGGGGGTTCC_CCAAGGGGGGCC
17._GC-01-074-4-10
AACCAAAAGGAAGG_AAACAAGGGGGG
 5758596061626364656667686970
_Input profile
CCGGGGGGAGAACCAAAAAAAAAAAACC
1._GC-01-74-4-10
CCGGGGGGAGAACCAAAAAAAAAAAACC
2._GU_221_/H
CC__CC__GG_______
3._GU_221_/H
CC__CC__GG_______
4._GU_221_/H
CC__CC__GG_______
5._GU_221_/H
CC__CC__GG_______
6._GU_221_/H
CC__CC__GG_______
7._GU_221_/H
CC__CC__GG_______
8._GU_221_/H
CC__CC__GG_______
9._GU_221_/H
CC__TT__GG_______
10._GC-01-074-4-10
CCCCCCCCAAAAGGAATTTTTTTTAA_
11._GC-01-074-4-10
CCCCCCCCAAAAGGAATTTTTTTTAAGG
12._GC-01-074-4-10
CCCCCCCCAAAAGGAATTTTTTTTAAGG
13._GC-01-074-4-10
CCCCCCCCAAAAGGAATTTTTTTTAAGG
14._GC-01-074-4-10
CCCCCCCCAAAAGGAATTTTTTTTAAGG
15._GC-01-074-4-10
CCCCCCCCAAAAGGAATTTTTTTTAAGG
16._GC-01-074-4-10
CCCCCCCCAAAAGGAATTTTTTTTAAGG
17._GC-01-074-4-10
CCCCCCTTAAAAGGAATTTTTTTTCCCC
 717273747576777879808182  
_Input profile
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
1._GC-01-74-4-10
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
2._GU_221_/H
_GGCC___CCGG_AATTAAX_XX_X
3._GU_221_/H
_GGCC___CCGG_AATTAAX_XX_X
4._GU_221_/H
_GGCC___CCGG_AATTAAX_XX_X
5._GU_221_/H
_GGCC___CCGG_AATTAAX_XX_X
6._GU_221_/H
_GGCC___CCGG_AATTAAX_XX_X
7._GU_221_/H
_GGCC___CCGG_AATTAAX_XX_X
8._GU_221_/H
_GGCC___CCGG_AATTAAX_XX_X
9._GU_221_/H
_CCTT___CTCG_TTCCAAX_XX_X
10._GC-01-074-4-10
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
11._GC-01-074-4-10
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
12._GC-01-074-4-10
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
13._GC-01-074-4-10
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
14._GC-01-074-4-10
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
15._GC-01-074-4-10
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
16._GC-01-074-4-10
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
17._GC-01-074-4-10
AACCTTCGGGCCCTCGCCTTCCAAX_XX_X

Input profile: GU_221_/H GU_221_H_Fld#_162_Plt#_1

 
USDA-TARS, United States of America
Location: Field: 162, Tree: 1
 Mars, 2018

1._GU_221_/H GC-01-74-4-10

identical
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 10, Tree: 6
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 6
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

3._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 12 > F
 Dapeng Zhang, 2016

4._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 1 > FP
 Dapeng Zhang, 2016

5._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 16
 Dapeng Zhang, 2016

6._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 15
 Dapeng Zhang, 2016

7._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 9
 Dapeng Zhang, 2016

8._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 14 > F
 Dapeng Zhang, 2016

9._GU_221_/H

38.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 4 > FP
 Dapeng Zhang, 2016

10._GU_221_/H GC-01-074-4-10

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

11._GU_221_/H GC-01-074-4-10

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

12._GU_221_/H GC-01-074-4-10

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

13._GU_221_/H GC-01-074-4-10

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

14._GU_221_/H GC-01-074-4-10

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP4
 Mars, 2018

15._GU_221_/H GC-01-074-4-10

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

16._GU_221_/H GC-01-074-4-10

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._GU_221_/H GC-01-074-4-10

34 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

 

 Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998