SNP Profiles of IMC-14   View Data

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 Key

 1234567891011121314
_Input profile
ACAAAAACAAAGGGCCAAGGGGAAAGCC
1._RUQ_1634
ACAAAAACAAAGGGCCAAGGGGAAAGCC
2._RUQ_1634
______GG_______
3._IMC_14
_____CTGG_AA_____
4._IMC_14
_____CTGG_AA_____
5._IMC_14
_____CTGG_AA_____
6._IMC_14
_____CTGG_AA_____
7._GC-03-030-3-09
_AAAAACTTCTGGGGAACCGG_CTGG
8._GC-03-030-3-09
ACAAAAACTTCTGGGGAACCGGTTCTGG
9._GC-03-030-3-09
ACAAAAACTTCTGGGGAACCGG_CTGG
10._GC-03-030-3-09
_AA_ACTTCTGGGGAACCGG_CTGG
11._GC-03-030-3-09
ACAAAAACTTCTGGGGAACCGGTTCTGG
12._GC-03-030-3-09
ACAAAAACTTCTGGGGAACCGGTTCTGG
13._GC-03-030-3-09
ACAAAAACTTCTGGGGAACCGGTTCTGG
14._GC-03-030-3-09
ACAAAAACTTCTGGGGAACCGGTTCTGG
15._GC-03-030-3-09
ACAAAAACTTCTGGGGAACCGGTTCTGG
16._GC-04-054-3-18
ACAAAAACTTCTGGGGAACCGGTTCTGG
17._IMC_14
_____CTGG_AA_____
18._IMC_14
_____CTGG_AA_____
19._IMC_14
_____CTGG_AA_____
20._IMC_14
_____CTGG_AA_____
21._IMC_14
_____CTGG_AA_____
22._IMC_14
_____CTGG_AA_____
23._IMC_14
_____CTGG_AA_____
24._IMC_14
_____CTGG_AA_____
25._IMC_14
_____CTGG_AA_____
26._IMC_14
_____CTGG_AA_____
27._GC-03-030-3-09
_AA_ACTTCTGGGGAACCGG_CTGG
28._GC-03-030-3-09
ACAAAAACTTCTGGGGAACCGGTTCTGG
29._GC-03-030-3-09
_AAAAACTTCTGGGGAACCGG_CTGG
30._RUQ_1634
_____CT_GG__GG___
31._RUQ_1634
_____CTAA_AA_____
 1516171819202122232425262728
_Input profile
AAAAAAAACCGGAAGGACAACGAGACAG
1._RUQ_1634
AAAAAAAACCGGAAGGACAACGAGACAG
2._RUQ_1634
_GT______AC_CG___
3._IMC_14
__TT___TT_ACTTCGAGGTCT
4._IMC_14
__TT_CC_TT_ACTTCGAGGTCT
5._IMC_14
__TT_CC_TT_ACTTCGAGGTCT
6._IMC_14
__TT_CC_TT_ACTTCGAGGTCT
7._GC-03-030-3-09
TT_TT_CCGGTT_ACTTCGAGGTCT
8._GC-03-030-3-09
TTGTTT_CCGGTT_ACTTCGAGGTCT
9._GC-03-030-3-09
TT_TTTTCCGGTTCCACTTCGAGGTCT
10._GC-03-030-3-09
TT_TT__GGTT_ACTTCGAGGTCT
11._GC-03-030-3-09
TT_TTTTCCGGTTCCACTTCGAGGTCT
12._GC-03-030-3-09
TTGTTTTTCCGGTTCCACTTCGAGGTCT
13._GC-03-030-3-09
TTGTTTTTCCGGTTCCACTTCGAGGTCT
14._GC-03-030-3-09
TTGTTTTTCCGGTTCCACTTCGAGGTCT
15._GC-03-030-3-09
TTGTTTTTCCGGTTCCACTTCGAGGTCT
16._GC-04-054-3-18
TTGTTTTTCCGGTTCCACTTCGAGGTCT
17._IMC_14
__TT___TT_ACTTCGAGGTCT
18._IMC_14
__TT___TT_ACTTCGAGGTCT
19._IMC_14
_GTTT_CC_TT_ACTTCGAGGTCT
20._IMC_14
_GTTT_CC_TT_ACTTCGAGGTCT
21._IMC_14
_GTTT_CC_TT_ACTTCGAGGTCT
22._IMC_14
_GTTT_CC_TT_ACTTCGAGGTCT
23._IMC_14
_GTTT_CC_TT_ACTTCGAGGTCT
24._IMC_14
_GTTT_CC_TT_ACTTCGAGGTCT
25._IMC_14
_GTTT_CC_TT_ACTTCGAGGTCT
26._IMC_14
_GTTT_CC_TT_ACTTCGAGGTCT
27._GC-03-030-3-09
TT_TT__GGTT_ACTTCGAGGTCT
28._GC-03-030-3-09
TTGTTTTTCCGGTTCCACTTCGAGGTCT
29._GC-03-030-3-09
TT_TT__GGTT_ACTTCGAGGTCT
30._RUQ_1634
_GT_TT___CCACTTCGAGGTCT
31._RUQ_1634
_TTCC_AA_TT_CCCT_AGGTCT
 2930313233343536373839404142
_Input profile
GGATGGACCGAGGGAAGGCCTTTTAGGG
1._RUQ_1634
GGATGGACCGAGGGAAGGCCTTTTAGGG
2._RUQ_1634
_____AG______AG_
3._IMC_14
CC__AACGAG_TTGG__TT__
4._IMC_14
CC__AACGAG_TTGG__TT__
5._IMC_14
CC__AACGAG_TTGG__TT__
6._IMC_14
CC__AACGAG_TTGG__TT__
7._GC-03-030-3-09
CCATGGAACGAGGGTTGGGGAATTAGGG
8._GC-03-030-3-09
CCATGGAACGAGGGTTGGGGAATTAGGG
9._GC-03-030-3-09
CCATGGAACGAGGGTTGGGGAATTAGGG
10._GC-03-030-3-09
CCATGGAACGAGGGTTGGGGAATTAGGG
11._GC-03-030-3-09
CCATGGAACGAGGGTTGGGGAATTAGGG
12._GC-03-030-3-09
CCATGGAACGAGGGTTGGGGAATTAGGG
13._GC-03-030-3-09
CCATGGAACGAGGGTTGGGGAATTAGGG
14._GC-03-030-3-09
CCATGGAACGAGGGTTGGGGAATTAGGG
15._GC-03-030-3-09
CCATGGAACGAGGGTTGGGGAATTAGGG
16._GC-04-054-3-18
CCATGGAACGAGGGTTGGGGAATTAGGG
17._IMC_14
CC__AACGAG_TTGG__TT__
18._IMC_14
CC__AACGAG_TTGG__TT__
19._IMC_14
CC__AC_AG_TTGG__TT__
20._IMC_14
CC__AACGAG_TTGG__TT__
21._IMC_14
CC__AACGAG_TTGG__TT__
22._IMC_14
CC__AACGAG_TTGG__TT__
23._IMC_14
CC__AACGAG_TTGG__TT__
24._IMC_14
CC__AACGAG_TTGG__TT__
25._IMC_14
CC__AACGAG_TTGG__TT__
26._IMC_14
CC__AACGAG_TTGG__TT__
27._GC-03-030-3-09
CCATGGAACGAGGGTTGGGGAATTAGGG
28._GC-03-030-3-09
CCATGGAACGAGGGTTGGGGAATTAGGG
29._GC-03-030-3-09
CCATGGAACGAGGGTTGGGGAATTAGGG
30._RUQ_1634
__GGACCGAG_TT____AGGG
31._RUQ_1634
CT__ACCCAA_CTGG__TT__
 4344454647484950515253545556
_Input profile
AAGGAGGGGGATGGAGAACCAGCCGGGG
1._RUQ_1634
AAGGAGGGGGATGGAGAACCAGCCGGGG
2._RUQ_1634
_________CC___GG
3._IMC_14
AA___GG____CC_GG_GG
4._IMC_14
AA___GG____CC_GG_GG
5._IMC_14
AA___GG____CC_GG_GG
6._IMC_14
AA___GG____CC_GG_GG
7._GC-03-030-3-09
AACCAGGGGGATCC_AACCAGGGGGGG
8._GC-03-030-3-09
AACCAGGGGGATCC_AACCAGGGGGGG
9._GC-03-030-3-09
AACCAGGGGGATCC_AACCAGGGGGGG
10._GC-03-030-3-09
AACCAGGGGGATCC_AACCAGGGGGGG
11._GC-03-030-3-09
AACCAGGGGGATCC_AACCAGGGGGGG
12._GC-03-030-3-09
AACCAGGGGGATCC_AACCAGGGGGGG
13._GC-03-030-3-09
AACCAGGGGGATCC_AACCAGGGGGGG
14._GC-03-030-3-09
AACCAGGGGGATCC_AACCAGGGGGGG
15._GC-03-030-3-09
AACCAGGGGGATCC_AACCAGGGGGGG
16._GC-04-054-3-18
AACCAGGGGGATCC_AACCAGGGGGGG
17._IMC_14
AA___GG____CC_GG_GG
18._IMC_14
AA___GG____CC_GG_GG
19._IMC_14
AA___GG____CC_GG_GG
20._IMC_14
AA___GG____CC_GG_GG
21._IMC_14
AA___GG____CC_GG_GG
22._IMC_14
AA___GG____CC_GG_GG
23._IMC_14
AA___GG____CC_GG_GG
24._IMC_14
AA___GG____CC_GG_GG
25._IMC_14
AA___GG____CC_GG_GG
26._IMC_14
AA___GG____CC_GG_GG
27._GC-03-030-3-09
AACCAGGGGGATCC_AACCAGGGGGGG
28._GC-03-030-3-09
AACCAGGGGGATCC_AACCAGGGGGGG
29._GC-03-030-3-09
AACC_GGGGATCC_AACCAGGGGGGG
30._RUQ_1634
AA_____CC__CC_GG_GG
31._RUQ_1634
AA___GG____CC_TT_CC
 5758596061626364656667686970
_Input profile
AAGGGGGGAAAACCGGAAAAAAAAACCG
1._RUQ_1634
AAGGGGGGAAAACCGGAAAAAAAAACCG
2._RUQ_1634
AA_CC___GGGG____ACTT
3._IMC_14
AA__CC__GG_______
4._IMC_14
AA__CC__GG_______
5._IMC_14
AA__CC__GG_______
6._IMC_14
AA__CC__GG_______
7._GC-03-030-3-09
AACCCCCCAA_GGGGTTTTTTTT_CG
8._GC-03-030-3-09
AACCCCCCAAAAGGGGTTTTTTTT_CG
9._GC-03-030-3-09
AACCCCCCAA_GGGGTTTTTTTTACCG
10._GC-03-030-3-09
AACCCCCCAA_GGGGTTTTTTTT_CG
11._GC-03-030-3-09
AACCCCCCAA_GGGGTTTTTTTTACCG
12._GC-03-030-3-09
AACCCCCCAAAAGGGGTTTTTTTTACCG
13._GC-03-030-3-09
AACCCCCCAAAAGGGGTTTTTTTTACCG
14._GC-03-030-3-09
AACCCCCCAAAAGGGGTTTTTTTTACCG
15._GC-03-030-3-09
AACCCCCCAAAAGGGGTTTTTTTTACCG
16._GC-04-054-3-18
AACCCCCCAAAAGGGGTTTTTTTTACCG
17._IMC_14
AA__CC__GG_______
18._IMC_14
AA__CC__GG_______
19._IMC_14
AA__CC__GG_______
20._IMC_14
AA__CC__GG_______
21._IMC_14
AA__CC__GG_______
22._IMC_14
AA__CC__GG_______
23._IMC_14
AA__CC__GG_______
24._IMC_14
AA__CC__GG_______
25._IMC_14
AA__CC__GG_______
26._IMC_14
AA__CC__GG_______
27._GC-03-030-3-09
AACCCCCCAA_GGGGTTTTTTTT_CG
28._GC-03-030-3-09
AACCCCCCAAAAGGGGTTTTTTTT_CG
29._GC-03-030-3-09
AACCCCCCAA_GGGGTTTTTTTT__
30._RUQ_1634
AA_CCCC__GGGGTT__TTAC_
31._RUQ_1634
CC__CT__GG_______
 717273747576777879808182  
_Input profile
GGGGGGGGGGCCGGGGGGAAAAAAX_XX_X
1._RUQ_1634
GGGGGGGGGGCCGGGGGGAAAAAAX_XX_X
2._RUQ_1634
_CC__GG______AAX_XX_X
3._IMC_14
_CCCC___CCGG_AA_AAX_XX_X
4._IMC_14
_CCCC___CCGG_AATTAAX_XX_X
5._IMC_14
_CCCC___CCGG_AATTAAX_XX_X
6._IMC_14
_CCCC___CCGG_AATTAAX_XX_X
7._GC-03-030-3-09
_CCCCCCGGCCCCGGCCAATTAAX_XX_X
8._GC-03-030-3-09
_CCCCCCGGCCCCGGCCAATTAAX_XX_X
9._GC-03-030-3-09
_CCCCCCGGCCCCGGCCAATTAAX_XX_X
10._GC-03-030-3-09
_CCCCCCGGCCCCGGCCAA_AAX_XX_X
11._GC-03-030-3-09
_CCCCCCGGCCCCGGCCAATTAAX_XX_X
12._GC-03-030-3-09
_CCCCCCGGCCCCGGCCAATTAAX_XX_X
13._GC-03-030-3-09
_CCCCCCGGCCCCGGCCAATTAAX_XX_X
14._GC-03-030-3-09
_CCCCCCGGCCCCGGCCAATTAAX_XX_X
15._GC-03-030-3-09
_CCCCCCGGCCCCGGCCAATTAAX_XX_X
16._GC-04-054-3-18
_CCCCCCGGCCCCGGCCAATTAAX_XX_X
17._IMC_14
_CCCC___CCGG_AATTAAX_XX_X
18._IMC_14
_CCCC___CCGG_AATTAAX_XX_X
19._IMC_14
_CCCC___CCGG_AATTAAX_XX_X
20._IMC_14
_CCCC___CCGG_AATTAAX_XX_X
21._IMC_14
_CCCC___CCGG_AATTAAX_XX_X
22._IMC_14
_CCCC___CCGG_AATTAAX_XX_X
23._IMC_14
_CCCC___CCGG_AATTAAX_XX_X
24._IMC_14
_CCCC___CCGG_AATTAAX_XX_X
25._IMC_14
_CCCC___CCGG_AATTAAX_XX_X
26._IMC_14
_CCCC___CCGG_AATTAAX_XX_X
27._GC-03-030-3-09
_CCCCCCGGCCCCGGCCAATTAAX_XX_X
28._GC-03-030-3-09
_CCCCCCGGCCCCGGCCAATTAAX_XX_X
29._GC-03-030-3-09
_CCCCCCGGCCCCGGCCAATTAAX_XX_X
30._RUQ_1634
_CCCC_-CC_____AAX_XX_X
31._RUQ_1634
_GGCC___TTGG_AACTAGX_XX_X

Input profile: IMC_14 GC-03-30-3-9

 
Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 9, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._IMC_14 RUQ_1634

identical
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._IMC_14 RUQ_1634

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._IMC_14

54.7 %
32 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

4._IMC_14

54.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

5._IMC_14

54.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

6._IMC_14

54.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

7._IMC_14 GC-03-030-3-09

54.1 %
73 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

8._IMC_14 GC-03-030-3-09

53.9 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._IMC_14 GC-03-030-3-09

53.9 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

10._IMC_14 GC-03-030-3-09

53.6 %
70 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._IMC_14 GC-03-030-3-09

53.2 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

12._IMC_14 GC-03-030-3-09

53.1 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._IMC_14 GC-03-030-3-09

53.1 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

14._IMC_14 GC-03-030-3-09

53.1 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

15._IMC_14 GC-03-030-3-09

53.1 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

16._IMC_14 GC-04-054-3-18

53.1 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

17._IMC_14

53 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

18._IMC_14

53 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

19._IMC_14

52.9 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

20._IMC_14

52.9 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

21._IMC_14

52.9 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

22._IMC_14

52.9 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 2
 Dapeng Zhang, 2016

23._IMC_14

52.9 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 3
 Dapeng Zhang, 2016

24._IMC_14

52.9 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

25._IMC_14

52.9 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

26._IMC_14

52.9 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

27._IMC_14 GC-03-030-3-09

52.8 %
71 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

28._IMC_14 GC-03-030-3-09

52.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._IMC_14 GC-03-030-3-09

52.1 %
70 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

30._IMC_14 RUQ_1634

50 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

31._IMC_14 RUQ_1634

38.2 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998