SNP Profiles of GU-221H   View Data

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 Key

 1234567891011121314
_Input profile
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
1._GU_221_H_Fld#_162_Plt#_1
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
2._GC-01-074-4-10
CCAAAGCCTTCCGGGGAACCGGTTCCTT
3._GC-01-074-4-10
CCAAAGCCTTCCGGGGAACCGGTTCCTT
4._GC-01-074-4-10
CCAAAGCCTTCCGGGGAACCGGTTCCTT
5._GC-01-074-4-10
CCAAAGCCTTCCGGGGAACCGGTTCCTT
6._GC-01-074-4-10
CCAAAGCCTTCCGGGGAACCGGTTCCTT
7._GC-01-074-4-10
CCAAAGCCTTCCGGGGAACCGGTTCCTT
8._GC-01-074-4-10
CCAAAGCCTTCCGGGGAACCGGTTCCTT
9._GU_221_/H
_____CCGG_AA_____
10._GU_221_/H
_____CCGG_AA_____
11._GU_221_/H
_____CCGG_AA_____
12._GU_221_/H
_____CCGG_AA_____
13._GU_221_/H
_____CCGG_AA_____
14._GU_221_/H
_____CCGG_AA_____
15._GU_221_/H
_____CCGG_AA_____
16._GU_221_/H
_____CCGG_AT_____
17._GC-01-074-4-10
CCCCGGCCTTCCGGGGATTTAACCCCTT
 1516171819202122232425262728
_Input profile
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
1._GU_221_H_Fld#_162_Plt#_1
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
2._GC-01-074-4-10
TTTTTT_GGTTCCAACCGGAGTTTTCC
3._GC-01-074-4-10
TTTTTTTTGGTTCCAACCGGAGTTTTCC
4._GC-01-074-4-10
TTTTTTTTGGTTCCAACCGGAGTTTTCC
5._GC-01-074-4-10
TTTTTTTTGGTTCCAACCGGAGTTTTCC
6._GC-01-074-4-10
TTTTTTTTGGTTCCAACCGGAGTTTTCC
7._GC-01-074-4-10
TTTTTTTTGGTTCCAACCGGAGTTTTCC
8._GC-01-074-4-10
TTTTTTTTGGTTCCAACCGGAGTTTTCC
9._GU_221_/H
_TTTT__TT_AACCGGAGTTTTCC
10._GU_221_/H
_TTTT__TT_AACCGGAGTTTTCC
11._GU_221_/H
_TTTT__TT_AACCGGAGTTTTCC
12._GU_221_/H
_TTTT__TT_AACCGGAGTTTTCC
13._GU_221_/H
_TTTT__TT_AACCGGAGTTTTCC
14._GU_221_/H
_TTTT__TT_AACCGGAGTTTTCC
15._GU_221_/H
_TTTT__TT_AACCGGAGTTTTCC
16._GU_221_/H
_GTTT__TT_ACCCCCAGGGTTCC
17._GC-01-074-4-10
TTGTTTTTAGTTCCACCCCCAGGGTTCC
 2930313233343536373839404142
_Input profile
TTGGAAGGGGGGGGGGCCTTAAAGGGAA
1._GU_221_H_Fld#_162_Plt#_1
TTGGAAGGGGGGGGGGCCTTAAAGGGAA
2._GC-01-074-4-10
AAGGAACCGGGGCCGGGGAAAAAGGGAA
3._GC-01-074-4-10
AAGGAACCGGGGCCGGGGAAAAAGGGAA
4._GC-01-074-4-10
AAGGAACCGGGGCCGGGGAAAAAGGGAA
5._GC-01-074-4-10
AAGGAACCGGGGCCGGGGAAAAAGGGAA
6._GC-01-074-4-10
AAGGAACCGGGGCCGGGGAAAAAGGGAA
7._GC-01-074-4-10
AAGGAACCGGGGCCGGGGAAAAAGGGAA
8._GC-01-074-4-10
AAGGAACCGGGGCCGGGGAAAAAGGGAA
9._GU_221_/H
__AACCGG_CCGG__AA__AA
10._GU_221_/H
__AACCGG_CCGG__AA__AA
11._GU_221_/H
__AACCGG_CCGG__AA__AA
12._GU_221_/H
__AACCGG_CCGG__AA__AA
13._GU_221_/H
__AACCGG_CCGG__AA__AA
14._GU_221_/H
__AACCGG_CCGG__AA__AA
15._GU_221_/H
__AACCGG_CCGG__AA__AA
16._GU_221_/H
__CCCGGG_TTGG__AA__AA
17._GC-01-074-4-10
TTGGCCCGGGGGTTGGTTAAAAAAGGAA
 4344454647484950515253545556
_Input profile
AGGGGGGGTTGGAACCAAGGCCGGCCCC
1._GU_221_H_Fld#_162_Plt#_1
AGGGGGGGTTGGAACCAAGGCCGGCCCC
2._GC-01-074-4-10
CTGGGGGGTTCC_CCAAGGGGGGCCCC
3._GC-01-074-4-10
CTGGGGGGTTCC_CCAAGGGGGGCCCC
4._GC-01-074-4-10
CTGGGGGGTTCC_CCAAGGGGGGCCCC
5._GC-01-074-4-10
CTGGGGGGTTCC_CCAAGGGGGGCCCC
6._GC-01-074-4-10
CTGGGGGGTTCC_CCAAGGGGGGCCCC
7._GC-01-074-4-10
CTGGGGGGTTCC_CCAAGGGGGGCCCC
8._GC-01-074-4-10
CTGGGGGGTTCC_CCAAGGGGGGCCCC
9._GU_221_/H
___GG____AA_GG_CCCC
10._GU_221_/H
___GG____AA_GG_CCCC
11._GU_221_/H
___GG____AA_GG_CCCC
12._GU_221_/H
___GG____AA_GG_CCCC
13._GU_221_/H
___GG____AA_GG_CCCC
14._GU_221_/H
___GG____AA_GG_CCCC
15._GU_221_/H
___GG____AA_GG_CCCC
16._GU_221_/H
___GG____AC_GG_GGCC
17._GC-01-074-4-10
CCAAAAGGAAGG_AAACAAGGGGGGCC
 5758596061626364656667686970
_Input profile
GGGGGGAGAACCAAAAAAAAAAAACCGG
1._GU_221_H_Fld#_162_Plt#_1
GGGGGGAGAACCAAAAAAAAAAAACCGG
2._GC-01-074-4-10
CCCCCCAAAAGGAATTTTTTTTAAGG_
3._GC-01-074-4-10
CCCCCCAAAAGGAATTTTTTTTAA__
4._GC-01-074-4-10
CCCCCCAAAAGGAATTTTTTTTAAGG_
5._GC-01-074-4-10
CCCCCCAAAAGGAATTTTTTTTAAGG_
6._GC-01-074-4-10
CCCCCCAAAAGGAATTTTTTTTAAGG_
7._GC-01-074-4-10
CCCCCCAAAAGGAATTTTTTTTAAGG_
8._GC-01-074-4-10
CCCCCCAAAAGGAATTTTTTTTAAGG_
9._GU_221_/H
__CC__GG________
10._GU_221_/H
__CC__GG________
11._GU_221_/H
__CC__GG________
12._GU_221_/H
__CC__GG________
13._GU_221_/H
__CC__GG________
14._GU_221_/H
__CC__GG________
15._GU_221_/H
__CC__GG________
16._GU_221_/H
__TT__GG________
17._GC-01-074-4-10
CCCCTTAAAAGGAATTTTTTTTCCCCAA
 7172737475767778798081   
_Input profile
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
1._GU_221_H_Fld#_162_Plt#_1
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
2._GC-01-074-4-10
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
3._GC-01-074-4-10
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
4._GC-01-074-4-10
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
5._GC-01-074-4-10
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
6._GC-01-074-4-10
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
7._GC-01-074-4-10
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
8._GC-01-074-4-10
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
9._GU_221_/H
GGCC___CCGG_AATTAAX_XX_XX_X
10._GU_221_/H
GGCC___CCGG_AATTAAX_XX_XX_X
11._GU_221_/H
GGCC___CCGG_AATTAAX_XX_XX_X
12._GU_221_/H
GGCC___CCGG_AATTAAX_XX_XX_X
13._GU_221_/H
GGCC___CCGG_AATTAAX_XX_XX_X
14._GU_221_/H
GGCC___CCGG_AATTAAX_XX_XX_X
15._GU_221_/H
GGCC___CCGG_AATTAAX_XX_XX_X
16._GU_221_/H
CCTT___CTCG_TTCCAAX_XX_XX_X
17._GC-01-074-4-10
CCTTCGGGCCCTCGCCTTCCAAX_XX_XX_X

Input profile: GU_221_/H GC-01-74-4-10

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 10, Tree: 6
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_221_/H GU_221_H_Fld#_162_Plt#_1

identical
81 shared markers

USDA-TARS, United States of America
Location: Field: 162, Tree: 1
 Mars, 2018

2._GU_221_/H GC-01-074-4-10

48.1 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

3._GU_221_/H GC-01-074-4-10

48.1 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._GU_221_/H GC-01-074-4-10

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

5._GU_221_/H GC-01-074-4-10

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

6._GU_221_/H GC-01-074-4-10

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP4
 Mars, 2018

7._GU_221_/H GC-01-074-4-10

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

8._GU_221_/H GC-01-074-4-10

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 6
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 9
 Dapeng Zhang, 2016

11._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 15
 Dapeng Zhang, 2016

12._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 16
 Dapeng Zhang, 2016

13._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 1 > FP
 Dapeng Zhang, 2016

14._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 12 > F
 Dapeng Zhang, 2016

15._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 14 > F
 Dapeng Zhang, 2016

16._GU_221_/H

39.7 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 4 > FP
 Dapeng Zhang, 2016

17._GU_221_/H GC-01-074-4-10

36.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998