SNP Profiles of GU 221 /H   View Data

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 Key

 1234567891011121314
_Input profile
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
1._GU_221_H_Fld#_162_Plt#_1
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
2._GU_221_/H
_____CCGG_AA_____
3._GU_221_/H
_____CCGG_AA_____
4._GU_221_/H
_____CCGG_AA_____
5._GU_221_/H
_____CCGG_AA_____
6._GU_221_/H
_____CCGG_AA_____
7._GU_221_/H
_____CCGG_AA_____
8._GU_221_/H
_____CCGG_AA_____
9._GU_221_/H
_____CCGG_AT_____
10._GC-01-074-4-10
CCAAAGCCTTCCGGGGAACCGGTTCCTT
11._GC-01-074-4-10
CCAAAGCCTTCCGGGGAACCGGTTCCTT
12._GC-01-074-4-10
CCAAAGCCTTCCGGGGAACCGGTTCCTT
13._GC-01-074-4-10
CCAAAGCCTTCCGGGGAACCGGTTCCTT
14._GC-01-074-4-10
CCAAAGCCTTCCGGGGAACCGGTTCCTT
15._GC-01-074-4-10
CCAAAGCCTTCCGGGGAACCGGTTCCTT
16._GC-01-074-4-10
CCAAAGCCTTCCGGGGAACCGGTTCCTT
17._GC-01-074-4-10
CCCCGGCCTTCCGGGGATTTAACCCCTT
 1516171819202122232425262728
_Input profile
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
1._GU_221_H_Fld#_162_Plt#_1
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
2._GU_221_/H
_TTTT__TT_AACCGGAGTTTTCC
3._GU_221_/H
_TTTT__TT_AACCGGAGTTTTCC
4._GU_221_/H
_TTTT__TT_AACCGGAGTTTTCC
5._GU_221_/H
_TTTT__TT_AACCGGAGTTTTCC
6._GU_221_/H
_TTTT__TT_AACCGGAGTTTTCC
7._GU_221_/H
_TTTT__TT_AACCGGAGTTTTCC
8._GU_221_/H
_TTTT__TT_AACCGGAGTTTTCC
9._GU_221_/H
_GTTT__TT_ACCCCCAGGGTTCC
10._GC-01-074-4-10
TTTTTTTTGGTTCCAACCGGAGTTTTCC
11._GC-01-074-4-10
TTTTTT_GGTTCCAACCGGAGTTTTCC
12._GC-01-074-4-10
TTTTTTTTGGTTCCAACCGGAGTTTTCC
13._GC-01-074-4-10
TTTTTTTTGGTTCCAACCGGAGTTTTCC
14._GC-01-074-4-10
TTTTTTTTGGTTCCAACCGGAGTTTTCC
15._GC-01-074-4-10
TTTTTTTTGGTTCCAACCGGAGTTTTCC
16._GC-01-074-4-10
TTTTTTTTGGTTCCAACCGGAGTTTTCC
17._GC-01-074-4-10
TTGTTTTTAGTTCCACCCCCAGGGTTCC
 2930313233343536373839404142
_Input profile
TTGGAAGGGGGGGGGGCCTTAAAGGGAA
1._GU_221_H_Fld#_162_Plt#_1
TTGGAAGGGGGGGGGGCCTTAAAGGGAA
2._GU_221_/H
__AACCGG_CCGG__AA__AA
3._GU_221_/H
__AACCGG_CCGG__AA__AA
4._GU_221_/H
__AACCGG_CCGG__AA__AA
5._GU_221_/H
__AACCGG_CCGG__AA__AA
6._GU_221_/H
__AACCGG_CCGG__AA__AA
7._GU_221_/H
__AACCGG_CCGG__AA__AA
8._GU_221_/H
__AACCGG_CCGG__AA__AA
9._GU_221_/H
__CCCGGG_TTGG__AA__AA
10._GC-01-074-4-10
AAGGAACCGGGGCCGGGGAAAAAGGGAA
11._GC-01-074-4-10
AAGGAACCGGGGCCGGGGAAAAAGGGAA
12._GC-01-074-4-10
AAGGAACCGGGGCCGGGGAAAAAGGGAA
13._GC-01-074-4-10
AAGGAACCGGGGCCGGGGAAAAAGGGAA
14._GC-01-074-4-10
AAGGAACCGGGGCCGGGGAAAAAGGGAA
15._GC-01-074-4-10
AAGGAACCGGGGCCGGGGAAAAAGGGAA
16._GC-01-074-4-10
AAGGAACCGGGGCCGGGGAAAAAGGGAA
17._GC-01-074-4-10
TTGGCCCGGGGGTTGGTTAAAAAAGGAA
 4344454647484950515253545556
_Input profile
AGGGGGGGTTGGAACCAAGGCCGGCCCC
1._GU_221_H_Fld#_162_Plt#_1
AGGGGGGGTTGGAACCAAGGCCGGCCCC
2._GU_221_/H
___GG____AA_GG_CCCC
3._GU_221_/H
___GG____AA_GG_CCCC
4._GU_221_/H
___GG____AA_GG_CCCC
5._GU_221_/H
___GG____AA_GG_CCCC
6._GU_221_/H
___GG____AA_GG_CCCC
7._GU_221_/H
___GG____AA_GG_CCCC
8._GU_221_/H
___GG____AA_GG_CCCC
9._GU_221_/H
___GG____AC_GG_GGCC
10._GC-01-074-4-10
CTGGGGGGTTCC_CCAAGGGGGGCCCC
11._GC-01-074-4-10
CTGGGGGGTTCC_CCAAGGGGGGCCCC
12._GC-01-074-4-10
CTGGGGGGTTCC_CCAAGGGGGGCCCC
13._GC-01-074-4-10
CTGGGGGGTTCC_CCAAGGGGGGCCCC
14._GC-01-074-4-10
CTGGGGGGTTCC_CCAAGGGGGGCCCC
15._GC-01-074-4-10
CTGGGGGGTTCC_CCAAGGGGGGCCCC
16._GC-01-074-4-10
CTGGGGGGTTCC_CCAAGGGGGGCCCC
17._GC-01-074-4-10
CCAAAAGGAAGG_AAACAAGGGGGGCC
 5758596061626364656667686970
_Input profile
GGGGGGAGAACCAAAAAAAAAAAACCGG
1._GU_221_H_Fld#_162_Plt#_1
GGGGGGAGAACCAAAAAAAAAAAACCGG
2._GU_221_/H
__CC__GG________
3._GU_221_/H
__CC__GG________
4._GU_221_/H
__CC__GG________
5._GU_221_/H
__CC__GG________
6._GU_221_/H
__CC__GG________
7._GU_221_/H
__CC__GG________
8._GU_221_/H
__CC__GG________
9._GU_221_/H
__TT__GG________
10._GC-01-074-4-10
CCCCCCAAAAGGAATTTTTTTTAA__
11._GC-01-074-4-10
CCCCCCAAAAGGAATTTTTTTTAAGG_
12._GC-01-074-4-10
CCCCCCAAAAGGAATTTTTTTTAAGG_
13._GC-01-074-4-10
CCCCCCAAAAGGAATTTTTTTTAAGG_
14._GC-01-074-4-10
CCCCCCAAAAGGAATTTTTTTTAAGG_
15._GC-01-074-4-10
CCCCCCAAAAGGAATTTTTTTTAAGG_
16._GC-01-074-4-10
CCCCCCAAAAGGAATTTTTTTTAAGG_
17._GC-01-074-4-10
CCCCTTAAAAGGAATTTTTTTTCCCCAA
 7172737475767778798081   
_Input profile
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
1._GU_221_H_Fld#_162_Plt#_1
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
2._GU_221_/H
GGCC___CCGG_AATTAAX_XX_XX_X
3._GU_221_/H
GGCC___CCGG_AATTAAX_XX_XX_X
4._GU_221_/H
GGCC___CCGG_AATTAAX_XX_XX_X
5._GU_221_/H
GGCC___CCGG_AATTAAX_XX_XX_X
6._GU_221_/H
GGCC___CCGG_AATTAAX_XX_XX_X
7._GU_221_/H
GGCC___CCGG_AATTAAX_XX_XX_X
8._GU_221_/H
GGCC___CCGG_AATTAAX_XX_XX_X
9._GU_221_/H
CCTT___CTCG_TTCCAAX_XX_XX_X
10._GC-01-074-4-10
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
11._GC-01-074-4-10
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
12._GC-01-074-4-10
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
13._GC-01-074-4-10
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
14._GC-01-074-4-10
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
15._GC-01-074-4-10
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
16._GC-01-074-4-10
GGCCCCGGCCCCGGCCAATTAAX_XX_XX_X
17._GC-01-074-4-10
CCTTCGGGCCCTCGCCTTCCAAX_XX_XX_X

Input profile: GU_221_/H GC-01-74-4-10

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 10, Tree: 6
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_221_/H GU_221_H_Fld#_162_Plt#_1

identical
81 shared markers

USDA-TARS, United States of America
Location: Field: 162, Tree: 1
 Mars, 2018

2._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 9
 Dapeng Zhang, 2016

3._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 14 > F
 Dapeng Zhang, 2016

4._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 12 > F
 Dapeng Zhang, 2016

5._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 1 > FP
 Dapeng Zhang, 2016

6._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 16
 Dapeng Zhang, 2016

7._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 15
 Dapeng Zhang, 2016

8._GU_221_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 6
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

9._GU_221_/H

39.7 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 4 > FP
 Dapeng Zhang, 2016

10._GU_221_/H GC-01-074-4-10

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

11._GU_221_/H GC-01-074-4-10

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

12._GU_221_/H GC-01-074-4-10

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

13._GU_221_/H GC-01-074-4-10

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

14._GU_221_/H GC-01-074-4-10

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP4
 Mars, 2018

15._GU_221_/H GC-01-074-4-10

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

16._GU_221_/H GC-01-074-4-10

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._GU_221_/H GC-01-074-4-10

34.4 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

 

 Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998