SNP Profiles of GU-221C   View Data

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 Key

 1234567891011121314
_Input profile
CCAAAACCAAGGGGCCAAGGGGAAGGAA
1._RUQ_200
CCAAAACCAAGGGGCCAAGGGGAAGGAA
2._GU_221_/C
_____CCGG_AA_____
3._GU_221_/C
_____CCGG_AA_____
4._GU_221_/C
_____CCGG_AA_____
5._GU_221_/C
_____CCGG_AA_____
6._GU_221_/C
_____CCGG_AA_____
7._GU_221_/C
_____CCGG_AA_____
8._GU_221_/C
_____CCGG_AA_____
9._GU_221_/C
_____CCGG_AA_____
10._GU_221_/C
_____CCGG_AA_____
11._GU_221_/C
_____CCGG_AA_____
12._GU_221_/C
_____CCGG_AA_____
13._GU_221_/C
_____CCGG_AA_____
14._RUQ_200
_____CCGG_AA_____
15._GU_221_/C
_____CCGG_AA_____
16._GU_221_/C
_____CCGG_AA_____
17._RUQ_200
_____CC_GG__GG___
18._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
19._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
20._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
21._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
22._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
23._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
24._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
25._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
26._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
27._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
28._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
29._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
30._GC-01-075-4-11
CCAAAGCCTTCCGGGGAACCGGTTCCTT
31._GC-01-075-4-11
CCAAAGCCTTCCGGGGAACCGGTTCCTT
 1516171819202122232425262728
_Input profile
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
1._RUQ_200
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
2._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
3._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
4._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
5._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
6._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
7._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
8._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
9._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
10._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
11._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
12._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
13._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
14._RUQ_200
_TTTT_CC_TT_AACCGGAGTTTT
15._GU_221_/C
_TTTT___TT_AACCCCGGTTTT
16._GU_221_/C
_TTTT___TT_AACCCCGGTTTT
17._RUQ_200
_TT_CT___CCAACCGGAGTTTT
18._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
19._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
20._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
21._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
22._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
23._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
24._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
25._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
26._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
27._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
28._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
29._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
30._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCCCGGTTTT
31._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCCCGGTTTT
 2930313233343536373839404142
_Input profile
GGTTGGAAGGGGGGGGGGCCTTATGGGG
1._RUQ_200
GGTTGGAAGGGGGGGGGGCCTTATGGGG
2._GU_221_/C
CC__AACCGG_CCGG__AT__
3._GU_221_/C
CC__AACCGG_CCGG__AT__
4._GU_221_/C
CC__AACCGG_CCGG__AT__
5._GU_221_/C
CC__AACCGG_CCGG__AT__
6._GU_221_/C
CC__AACCGG_CCGG__AT__
7._GU_221_/C
CC__AACCGG_CCGG__AT__
8._GU_221_/C
CC__AACCGG_CCGG__AT__
9._GU_221_/C
CC__AACCGG_CCGG__AT__
10._GU_221_/C
CC__AACCGG_CCGG__AT__
11._GU_221_/C
CC__AACCGG_CCGG__AT__
12._GU_221_/C
CC__AACCGG_CCGG__AT__
13._GU_221_/C
CC__AACCGG_CCGG__AT__
14._RUQ_200
CC__AACCGG_CCGG__AT__
15._GU_221_/C
CC__AACCGG_CCGG__AA__
16._GU_221_/C
CC__AACCGG_CCGG__AA__
17._RUQ_200
__GGAACCGG_CC____GGGG
18._GC-01-075-4-11
CC_GGAACCGGGGCCGGGGAAATGGGG
19._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
20._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
21._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
22._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
23._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
24._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
25._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
26._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
27._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
28._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
29._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
30._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAAAGGGG
31._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAAAGGGG
 4344454647484950515253545556
_Input profile
AAAAGGGGGGTTGGAACCAAGGCCGGCC
1._RUQ_200
AAAAGGGGGGTTGGAACCAAGGCCGGCC
2._GU_221_/C
AA___GG____AA_GG_CC
3._GU_221_/C
AA___GG____AA_GG_CC
4._GU_221_/C
AA___GG____AA_GG_CC
5._GU_221_/C
AA___GG____AA_GG_CC
6._GU_221_/C
AA___GG____AA_GG_CC
7._GU_221_/C
AA___GG____AA_GG_CC
8._GU_221_/C
AA___GG____AA_GG_CC
9._GU_221_/C
AA___GG____AA_GG_CC
10._GU_221_/C
AA___GG____AA_GG_CC
11._GU_221_/C
AA___GG____AA_GG_CC
12._GU_221_/C
AA___GG____AA_GG_CC
13._GU_221_/C
AA___GG____AA_GG_CC
14._RUQ_200
AA___AG____AA_GG_CC
15._GU_221_/C
AA___GG____AA_GG_CC
16._GU_221_/C
AA___GG____AA_GG_CC
17._RUQ_200
AA_____CC__AA_GG_CC
18._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
19._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
20._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
21._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
22._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
23._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
24._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
25._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
26._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
27._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
28._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
29._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
30._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
31._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
 5758596061626364656667686970
_Input profile
ACGGGGGGAGAACCAAAAAAAAAAAACC
1._RUQ_200
ACGGGGGGAGAACCAAAAAAAAAAAACC
2._GU_221_/C
AC_____GG_______
3._GU_221_/C
AC__CC__GG_______
4._GU_221_/C
AC__CC__GG_______
5._GU_221_/C
AC__CC__GG_______
6._GU_221_/C
AC__CC__GG_______
7._GU_221_/C
AC__CC__GG_______
8._GU_221_/C
AC__CC__GG_______
9._GU_221_/C
AC__CC__GG_______
10._GU_221_/C
AC__CC__GG_______
11._GU_221_/C
AC__CC__GG_______
12._GU_221_/C
AC__CC__GG_______
13._GU_221_/C
AC__CC__GG_______
14._RUQ_200
AC__CC__GG_______
15._GU_221_/C
CC__CC__GG_______
16._GU_221_/C
CC__CC__GG_______
17._RUQ_200
AC_CCCC__GGAATT__TTAA_
18._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
19._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTT_AAGG
20._GC-01-075-4-11
ACCCCC_AAAAGGAATTTTTTTTAAGG
21._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
22._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
23._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
24._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
25._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
26._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
27._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
28._GC-01-075-4-11
ACCCCCCCAAAAGG_TTTTTTTTAAGG
29._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
30._GC-01-075-4-11
CCCCCCCCAAAAGGAATTGGTTTTAAGG
31._GC-01-075-4-11
CCCCCCCCAAAAGGAATTGGTTTTAAGG
 717273747576777879808182  
_Input profile
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
1._RUQ_200
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
2._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
3._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
4._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
5._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
6._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
7._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
8._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
9._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
10._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
11._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
12._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
13._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
14._RUQ_200
_GGCC___CCGG_AATTAAX_XX_X
15._GU_221_/C
_GGCC___CCGG_AACCGGX_XX_X
16._GU_221_/C
_GGCC___CCGG_AACCGGX_XX_X
17._RUQ_200
_GGCC_-CC_____AAX_XX_X
18._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
19._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
20._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
21._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
22._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
23._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
24._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
25._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
26._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
27._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
28._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
29._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
30._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
31._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAACCGGX_XX_X

Input profile: GU_221_/C GC-01-75-4-11

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_221_/C RUQ_200

identical
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._GU_221_/C

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 6
 Dapeng Zhang, 2016

3._GU_221_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 4 > FP
 Dapeng Zhang, 2016

4._GU_221_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

5._GU_221_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

6._GU_221_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 13 > F
 Dapeng Zhang, 2016

7._GU_221_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 16
 Dapeng Zhang, 2016

8._GU_221_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 14
 Dapeng Zhang, 2016

9._GU_221_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 12
 Dapeng Zhang, 2016

10._GU_221_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 10
 Dapeng Zhang, 2016

11._GU_221_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 9
 Dapeng Zhang, 2016

12._GU_221_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 8
 Dapeng Zhang, 2016

13._GU_221_/C

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

14._GU_221_/C RUQ_200

47.1 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._GU_221_/C

38.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 11
 Dapeng Zhang, 2016

16._GU_221_/C

38.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 1 > FP
 Dapeng Zhang, 2016

17._GU_221_/C RUQ_200

43.2 %
37 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._GU_221_/C GC-01-075-4-11

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._GU_221_/C GC-01-075-4-11

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

20._GU_221_/C GC-01-075-4-11

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

21._GU_221_/C GC-01-075-4-11

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

22._GU_221_/C GC-01-075-4-11

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

23._GU_221_/C GC-01-075-4-11

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

24._GU_221_/C GC-01-075-4-11

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

25._GU_221_/C GC-01-075-4-11

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

26._GU_221_/C GC-01-075-4-11

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

27._GU_221_/C GC-01-075-4-11

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

28._GU_221_/C GC-01-075-4-11

46.2 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

29._GU_221_/C GC-01-075-4-11

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

30._GU_221_/C GC-01-075-4-11

42.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

31._GU_221_/C GC-01-075-4-11

42.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

 

 Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998