SNP Profiles of GU%20221%20/C   View Data

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 1234567891011121314
_Input profile
CCAAAACCAAGGGGCCAAGGGGAAGGAA
1._RUQ_200
CCAAAACCAAGGGGCCAAGGGGAAGGAA
2._RUQ_200
______GG_______
3._GU_221_/C
_____CCGG_AA_____
4._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
5._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
6._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
7._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
8._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
9._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
10._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
11._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
12._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
13._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
14._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
15._RUQ_200
_____CCGG_AA_____
16._GU_221_/C
_____CCGG_AA_____
17._GU_221_/C
_____CCGG_AA_____
18._GU_221_/C
_____CCGG_AA_____
19._GU_221_/C
_____CCGG_AA_____
20._GU_221_/C
_____CCGG_AA_____
21._GU_221_/C
_____CCGG_AA_____
22._GU_221_/C
_____CCGG_AA_____
23._GU_221_/C
_____CCGG_AA_____
24._GU_221_/C
_____CCGG_AA_____
25._GU_221_/C
_____CCGG_AA_____
26._GU_221_/C
_____CCGG_AA_____
27._GC-01-075-4-11
CCAAAACCTTCCGGGGAACCGGTTCCTT
28._GC-01-075-4-11
CCAAAGCCTTCCGGGGAACCGGTTCCTT
29._GC-01-075-4-11
CCAAAGCCTTCCGGGGAACCGGTTCCTT
30._RUQ_200
_____CC_GG__GG___
31._GU_221_/C
_____CCGG_AA_____
32._GU_221_/C
_____CCGG_AA_____
 1516171819202122232425262728
_Input profile
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
1._RUQ_200
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
2._RUQ_200
_TT______AA_GG___
3._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
4._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
5._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
6._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
7._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
8._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
9._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
10._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
11._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
12._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
13._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
14._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
15._RUQ_200
_TTTT_CC_TT_AACCGGAGTTTT
16._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
17._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
18._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
19._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
20._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
21._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
22._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
23._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
24._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
25._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
26._GU_221_/C
_TTTT___TT_AACCGGAGTTTT
27._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCGGAGTTTT
28._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCCCGGTTTT
29._GC-01-075-4-11
TTTTTTTT_GGTTCCAACCCCGGTTTT
30._RUQ_200
_TT_CT___CCAACCGGAGTTTT
31._GU_221_/C
_TTTT___TT_AACCCCGGTTTT
32._GU_221_/C
_TTTT___TT_AACCCCGGTTTT
 2930313233343536373839404142
_Input profile
GGTTGGAAGGGGGGGGGGCCTTATGGGG
1._RUQ_200
GGTTGGAAGGGGGGGGGGCCTTATGGGG
2._RUQ_200
_____GG______GG_
3._GU_221_/C
CC__AACCGG_CCGG__AT__
4._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
5._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
6._GC-01-075-4-11
CC_GGAACCGGGGCCGGGGAAATGGGG
7._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
8._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
9._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
10._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
11._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
12._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
13._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
14._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
15._RUQ_200
CC__AACCGG_CCGG__AT__
16._GU_221_/C
CC__AACCGG_CCGG__AT__
17._GU_221_/C
CC__AACCGG_CCGG__AT__
18._GU_221_/C
CC__AACCGG_CCGG__AT__
19._GU_221_/C
CC__AACCGG_CCGG__AT__
20._GU_221_/C
CC__AACCGG_CCGG__AT__
21._GU_221_/C
CC__AACCGG_CCGG__AT__
22._GU_221_/C
CC__AACCGG_CCGG__AT__
23._GU_221_/C
CC__AACCGG_CCGG__AT__
24._GU_221_/C
CC__AACCGG_CCGG__AT__
25._GU_221_/C
CC__AACCGG_CCGG__AT__
26._GU_221_/C
CC__AACCGG_CCGG__AT__
27._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAATGGGG
28._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAAAGGGG
29._GC-01-075-4-11
CCAAGGAACCGGGGCCGGGGAAAAGGGG
30._RUQ_200
__GGAACCGG_CC____GGGG
31._GU_221_/C
CC__AACCGG_CCGG__AA__
32._GU_221_/C
CC__AACCGG_CCGG__AA__
 4344454647484950515253545556
_Input profile
AAAAGGGGGGTTGGAACCAAGGCCGGCC
1._RUQ_200
AAAAGGGGGGTTGGAACCAAGGCCGGCC
2._RUQ_200
_________AA___CC
3._GU_221_/C
AA___GG____AA_GG_CC
4._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
5._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
6._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
7._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
8._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
9._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
10._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
11._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
12._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
13._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
14._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
15._RUQ_200
AA___AG____AA_GG_CC
16._GU_221_/C
AA___GG____AA_GG_CC
17._GU_221_/C
AA___GG____AA_GG_CC
18._GU_221_/C
AA___GG____AA_GG_CC
19._GU_221_/C
AA___GG____AA_GG_CC
20._GU_221_/C
AA___GG____AA_GG_CC
21._GU_221_/C
AA___GG____AA_GG_CC
22._GU_221_/C
AA___GG____AA_GG_CC
23._GU_221_/C
AA___GG____AA_GG_CC
24._GU_221_/C
AA___GG____AA_GG_CC
25._GU_221_/C
AA___GG____AA_GG_CC
26._GU_221_/C
AA___GG____AA_GG_CC
27._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
28._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
29._GC-01-075-4-11
AATTGGGGGGTTCC_CCAAGGGGGGCC
30._RUQ_200
AA_____CC__AA_GG_CC
31._GU_221_/C
AA___GG____AA_GG_CC
32._GU_221_/C
AA___GG____AA_GG_CC
 5758596061626364656667686970
_Input profile
ACGGGGGGAGAACCAAAAAAAAAAAACC
1._RUQ_200
ACGGGGGGAGAACCAAAAAAAAAAAACC
2._RUQ_200
AC_CC___GGAA____AACC
3._GU_221_/C
AC_____GG_______
4._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTT_AAGG
5._GC-01-075-4-11
ACCCCC_AAAAGGAATTTTTTTTAAGG
6._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
7._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
8._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
9._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
10._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
11._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
12._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
13._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
14._GC-01-075-4-11
ACCCCCCCAAAAGGAATTTTTTTTAAGG
15._RUQ_200
AC__CC__GG_______
16._GU_221_/C
AC__CC__GG_______
17._GU_221_/C
AC__CC__GG_______
18._GU_221_/C
AC__CC__GG_______
19._GU_221_/C
AC__CC__GG_______
20._GU_221_/C
AC__CC__GG_______
21._GU_221_/C
AC__CC__GG_______
22._GU_221_/C
AC__CC__GG_______
23._GU_221_/C
AC__CC__GG_______
24._GU_221_/C
AC__CC__GG_______
25._GU_221_/C
AC__CC__GG_______
26._GU_221_/C
AC__CC__GG_______
27._GC-01-075-4-11
ACCCCCCCAAAAGG_TTTTTTTTAAGG
28._GC-01-075-4-11
CCCCCCCCAAAAGGAATTGGTTTTAAGG
29._GC-01-075-4-11
CCCCCCCCAAAAGGAATTGGTTTTAAGG
30._RUQ_200
AC_CCCC__GGAATT__TTAA_
31._GU_221_/C
CC__CC__GG_______
32._GU_221_/C
CC__CC__GG_______
 717273747576777879808182  
_Input profile
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
1._RUQ_200
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
2._RUQ_200
_GG__GG______AAX_XX_X
3._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
4._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
5._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
6._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
7._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
8._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
9._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
10._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
11._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
12._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
13._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
14._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
15._RUQ_200
_GGCC___CCGG_AATTAAX_XX_X
16._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
17._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
18._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
19._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
20._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
21._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
22._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
23._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
24._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
25._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
26._GU_221_/C
_GGCC___CCGG_AATTAAX_XX_X
27._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAATTAAX_XX_X
28._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
29._GC-01-075-4-11
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
30._RUQ_200
_GGCC_-CC_____AAX_XX_X
31._GU_221_/C
_GGCC___CCGG_AACCGGX_XX_X
32._GU_221_/C
_GGCC___CCGG_AACCGGX_XX_X

Input profile: GU_221_/C GC-01-75-4-11

 
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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_221_/C RUQ_200

identical
82 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._GU_221_/C RUQ_200

70.6 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._GU_221_/C

48.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 6
 Dapeng Zhang, 2016

4._GU_221_/C GC-01-075-4-11

48.1 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

5._GU_221_/C GC-01-075-4-11

48.1 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._GU_221_/C GC-01-075-4-11

48.1 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

8._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

9._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

10._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

11._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

12._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

14._GU_221_/C GC-01-075-4-11

47.5 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

15._GU_221_/C RUQ_200

47.1 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._GU_221_/C

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

17._GU_221_/C

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 8
 Dapeng Zhang, 2016

18._GU_221_/C

47.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 9
 Dapeng Zhang, 2016

19._GU_221_/C

47.1 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1411 10
 Dapeng Zhang, 2016

20._GU_221_/C

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 12
 Dapeng Zhang, 2016

21._GU_221_/C

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 14
 Dapeng Zhang, 2016

22._GU_221_/C

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 16
 Dapeng Zhang, 2016

23._GU_221_/C

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 13 > F
 Dapeng Zhang, 2016

24._GU_221_/C

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

25._GU_221_/C

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

26._GU_221_/C

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 4 > FP
 Dapeng Zhang, 2016

27._GU_221_/C GC-01-075-4-11

46.8 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

28._GU_221_/C GC-01-075-4-11

44.9 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

29._GU_221_/C GC-01-075-4-11

44.9 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

30._GU_221_/C RUQ_200

44.4 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

31._GU_221_/C

42.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 11
 Dapeng Zhang, 2016

32._GU_221_/C

42.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1411 1 > FP
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998