SNP Profiles of GU-168H   View Data

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 Key

 1234567891011121314
_Input profile
CCCCAACCAAGGGGCCAAGGGGAAGGAA
1._GU_168_/H
_____CCGG_AA_____
2._GU_168_/H
_____CCGG_AA_____
3._GU_168_/H
_____CCGG_AA_____
4._GU_168_/H
_____CCGG_AA_____
5._GU_168_/H
_____CCGG_AA_____
6._GU_168_/H
_____CCGG_AA_____
7._GU_168_/H
_____CCGG_AA_____
8._GU_168_/H
_____CCGG_AA_____
9._GU_168_/H
_____CCGG_AA_____
10._GU_168_/H
_____CCGG_AA_____
11._RUQ_223
_____CCGG_AA_____
12._RUQ_223
_____CC_GG__GG___
13._GU_168_/H
_____CCAA_AA_____
14._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
15._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
16._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
17._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
18._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
19._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
20._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
21._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
22._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
23._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
24._GC-03-023-2-12
CCAAAAAATTCCAAGGAACCAATTTTGG
 1516171819202122232425262728
_Input profile
AAAAAAAAGGAAGGAAGGGGGGAAAAGG
1._GU_168_/H
_TTTT__TT_AACCCCGGTT_CC
2._GU_168_/H
_TTTT__TT__CCCCGGTTTTCC
3._GU_168_/H
_TTTT__TT_AACCCCGGTTTTCC
4._GU_168_/H
_TTTT__TT_AACCCCGGTTTTCC
5._GU_168_/H
_TTTT__TT_AACCCCGGTTTTCC
6._GU_168_/H
_TTTT__TT_AACCCCGGTTTTCC
7._GU_168_/H
_TTTT__TT_AACCCCGGTTTTCC
8._GU_168_/H
_TTTT__TT_AACCCCGGTTTTCC
9._GU_168_/H
_TTTT__TT_AACCCCGGTTTTCC
10._GU_168_/H
_TTTT__TT_AACCCCGGTTTTCC
11._RUQ_223
_TTTT__TT_AACCGGAGTTTTCC
12._RUQ_223
_TT_TT__CCAACCGGAGTTTT_
13._GU_168_/H
_TTCC__TT_ACCTGGAATTCCTT
14._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTT_CC
15._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
16._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
17._GC-03-023-2-12
TTTTTTTTGGTTCC_CCCCGGTTTTCC
18._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
19._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
20._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
21._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
22._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
23._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
24._GC-03-023-2-12
CTTTCCTTGGTTTTACCTGGAATTCCTT
 2930313233343536373839404142
_Input profile
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
1._GU_168_/H
__AACCGG_CCGG__TT__AA
2._GU_168_/H
__AACCGG_CCGG__TT__AA
3._GU_168_/H
__AACCGG_CCGG__TT__AA
4._GU_168_/H
__AACCGG_CCGG__TT__AA
5._GU_168_/H
__AACCGG_CCGG__TT__AA
6._GU_168_/H
__AACCGG_CCGG__TT__AA
7._GU_168_/H
__AACCGG_CCGG__TT__AA
8._GU_168_/H
__AACCGG_CCGG__TT__AA
9._GU_168_/H
__AACCGG_CCGG__TT__AA
10._GU_168_/H
__AACCGG_CCGG__TT__AA
11._RUQ_223
__AACCGG_CCGG__AT__AA
12._RUQ_223
_GGAACCGG_CC____GGGGAA
13._GU_168_/H
__AACCAA_CCGG__TT__AA
14._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
15._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
16._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
17._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
18._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
19._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
20._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
21._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
22._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
23._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
24._GC-03-023-2-12
AAGGAACCAAGGCCGGGGAATTGGGGAA
 4344454647484950515253545556
_Input profile
AAGGGGGGTTGGAACCAAGGCCGGCCCC
1._GU_168_/H
___GG____AA_GG_CCCC
2._GU_168_/H
___GG____AA_GG_CCCC
3._GU_168_/H
___GG____AA_GG__CC
4._GU_168_/H
___GG____AA_GG_CCCC
5._GU_168_/H
___GG____AA_GG_CCCC
6._GU_168_/H
___GG____AA_GG_CCCC
7._GU_168_/H
___GG____AA_GG_CCCC
8._GU_168_/H
___GG____AA_GG_CCCC
9._GU_168_/H
___GG____AA_GG_CCCC
10._GU_168_/H
___GG____AA_GG_CCCC
11._RUQ_223
___AG____AA_GG_CCCC
12._RUQ_223
_____CC__AA_GG_CCCC
13._GU_168_/H
___GG____CC_TT_CCCC
14._GC-03-023-2-12
TTGGGGGGTTCC_CCAAGGGGGGCCCC
15._GC-03-023-2-12
TTGGGGGGTTCC_CCAAGGGGGGCCCC
16._GC-03-023-2-12
TTGGGGGGTTCC_CCAAGGGGGGCCCC
17._GC-03-023-2-12
TTGGGGGGTTCC_CCAAGGGGGGCCCC
18._GC-03-023-2-12
TTGGGGGGTTCC_CCAAGGGGGGCCCC
19._GC-03-023-2-12
TTGGGGGGTTCC_CCAAGGGGGGCCCC
20._GC-03-023-2-12
TTGGGGGGTTCC_CCAAGGGGGGCCCC
21._GC-03-023-2-12
TTGGGGGGTTCC_CCAAGGGGGG_CC
22._GC-03-023-2-12
TTGGGGGGTTCC_CCAAGGGGGGCCCC
23._GC-03-023-2-12
TTGGGGGGTTCC_CCAAGGGGGGCCCC
24._GC-03-023-2-12
TTGGGGGGTTCC_CCCCGGTTAACCCC
 5758596061626364656667686970
_Input profile
GGGGGGAGAACCAAAACCAAAAAACCGG
1._GU_168_/H
__CC__GG________
2._GU_168_/H
__CC__GG________
3._GU_168_/H
__CC__GG________
4._GU_168_/H
__CC__GG________
5._GU_168_/H
__CC__GG________
6._GU_168_/H
__CC__GG________
7._GU_168_/H
__CC__GG________
8._GU_168_/H
__CC__GG________
9._GU_168_/H
__CC__GG________
10._GU_168_/H
__CC__GG________
11._RUQ_223
__CC__GG________
12._RUQ_223
_CCCC__GGAATT__TTAA__
13._GU_168_/H
__TT__GG________
14._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG_
15._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG_
16._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG_
17._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG_
18._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG_
19._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG_
20._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG_
21._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG_
22._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG_
23._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG_
24._GC-03-023-2-12
CCTTTTAAAAGGGGTTTTTTTTAAGG_
 7172737475767778798081   
_Input profile
CCGGGGGGCCGGGGGGAAGGGGX_XX_XX_X
1._GU_168_/H
GGCC___CCGG_AACCGGX_XX_XX_X
2._GU_168_/H
GGCC___CCGG_AACCGGX_XX_XX_X
3._GU_168_/H
GGCC___CCGG_AACCGGX_XX_XX_X
4._GU_168_/H
GGCC___CCGG_AACCGGX_XX_XX_X
5._GU_168_/H
GGCC___CCGG_AACCGGX_XX_XX_X
6._GU_168_/H
GGCC___CCGG_AACCGGX_XX_XX_X
7._GU_168_/H
GGCC___CCGG_AACCGGX_XX_XX_X
8._GU_168_/H
GGCC___CCGG_AACCGGX_XX_XX_X
9._GU_168_/H
GGCC___CCGG_AACCGGX_XX_XX_X
10._GU_168_/H
GGCC___CCGG_AACCGGX_XX_XX_X
11._RUQ_223
GGCC___CCGG_AACTAGX_XX_XX_X
12._RUQ_223
GGCC_-CC_____AGX_XX_XX_X
13._GU_168_/H
GGCC___TTCC_AATTGGX_XX_XX_X
14._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
15._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
16._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
17._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
18._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
19._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
20._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
21._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
22._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
23._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
24._GC-03-023-2-12
GGCCCC_CCTTCCCCAATTGGX_XX_XX_X

Input profile: GU_168_/H GC-03-23-2-12

 
Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_168_/H

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 7 > FP
 Dapeng Zhang, 2016

2._GU_168_/H

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 3
 Dapeng Zhang, 2016

3._GU_168_/H

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 12 > F
 Dapeng Zhang, 2016

4._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 10 > F
 Dapeng Zhang, 2016

5._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 1 > FP
 Dapeng Zhang, 2016

6._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 15
 Dapeng Zhang, 2016

7._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 13
 Dapeng Zhang, 2016

8._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 6
 Dapeng Zhang, 2016

9._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 4
 Dapeng Zhang, 2016

10._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._GU_168_/H RUQ_223

44.1 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._GU_168_/H RUQ_223

43.2 %
37 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._GU_168_/H

33.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 16
 Dapeng Zhang, 2016

14._GU_168_/H GC-03-023-2-12

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

15._GU_168_/H GC-03-023-2-12

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

16._GU_168_/H GC-03-023-2-12

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._GU_168_/H GC-03-023-2-12

46.2 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

18._GU_168_/H GC-03-023-2-12

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

19._GU_168_/H GC-03-023-2-12

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

20._GU_168_/H GC-03-023-2-12

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP1
 Mars, 2018

21._GU_168_/H GC-03-023-2-12

46.2 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

22._GU_168_/H GC-03-023-2-12

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

23._GU_168_/H GC-03-023-2-12

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

24._GU_168_/H GC-03-023-2-12

34 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

 

 Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998