SNP Profiles of GU-168H   View Data

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 Key

 1234567891011121314
_Input profile
CCCCAACCAAGGGGCCAAGGGGAAGGAA
1._RUQ_223
______GG_______
2._GU_168_/H
_____CCGG_AA_____
3._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
4._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
5._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
6._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
7._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
8._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
9._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
10._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
11._GU_168_/H
_____CCGG_AA_____
12._GU_168_/H
_____CCGG_AA_____
13._GU_168_/H
_____CCGG_AA_____
14._GU_168_/H
_____CCGG_AA_____
15._GU_168_/H
_____CCGG_AA_____
16._GU_168_/H
_____CCGG_AA_____
17._GU_168_/H
_____CCGG_AA_____
18._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
19._GC-03-023-2-12
CCCCAACCTTCCGGGGAACCGGTTCCTT
20._GU_168_/H
_____CCGG_AA_____
21._GU_168_/H
_____CCGG_AA_____
22._RUQ_223
_____CC_GG__GG___
23._RUQ_223
_____CCGG_AA_____
24._GC-03-023-2-12
CCAAAAAATTCCAAGGAACCAATTTTGG
25._GU_168_/H
_____CCAA_AA_____
 1516171819202122232425262728
_Input profile
AAAAAAAAGGAAGGAAGGGGGGAAAAGG
1._RUQ_223
_TT_____AA_GG____
2._GU_168_/H
_TTTT__TT_AACCCCGGTT_CC
3._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTT_CC
4._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
5._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
6._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
7._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
8._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
9._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
10._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
11._GU_168_/H
_TTTT__TT_AACCCCGGTTTTCC
12._GU_168_/H
_TTTT__TT_AACCCCGGTTTTCC
13._GU_168_/H
_TTTT__TT_AACCCCGGTTTTCC
14._GU_168_/H
_TTTT__TT_AACCCCGGTTTTCC
15._GU_168_/H
_TTTT__TT_AACCCCGGTTTTCC
16._GU_168_/H
_TTTT__TT_AACCCCGGTTTTCC
17._GU_168_/H
_TTTT__TT_AACCCCGGTTTTCC
18._GC-03-023-2-12
TTTTTTTTGGTTCCAACCCCGGTTTTCC
19._GC-03-023-2-12
TTTTTTTTGGTTCC_CCCCGGTTTTCC
20._GU_168_/H
_TTTT__TT__CCCCGGTTTTCC
21._GU_168_/H
_TTTT__TT_AACCCCGGTTTTCC
22._RUQ_223
_TT_TT__CCAACCGGAGTTTT_
23._RUQ_223
_TTTT__TT_AACCGGAGTTTTCC
24._GC-03-023-2-12
CTTTCCTTGGTTTTACCTGGAATTCCTT
25._GU_168_/H
_TTCC__TT_ACCTGGAATTCCTT
 2930313233343536373839404142
_Input profile
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
1._RUQ_223
____GG______GG__
2._GU_168_/H
__AACCGG_CCGG__TT__AA
3._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
4._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
5._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
6._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
7._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
8._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
9._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
10._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
11._GU_168_/H
__AACCGG_CCGG__TT__AA
12._GU_168_/H
__AACCGG_CCGG__TT__AA
13._GU_168_/H
__AACCGG_CCGG__TT__AA
14._GU_168_/H
__AACCGG_CCGG__TT__AA
15._GU_168_/H
__AACCGG_CCGG__TT__AA
16._GU_168_/H
__AACCGG_CCGG__TT__AA
17._GU_168_/H
__AACCGG_CCGG__TT__AA
18._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
19._GC-03-023-2-12
AAGGAACCGGGGCCGGGGAATTGGGGAA
20._GU_168_/H
__AACCGG_CCGG__TT__AA
21._GU_168_/H
__AACCGG_CCGG__TT__AA
22._RUQ_223
_GGAACCGG_CC____GGGGAA
23._RUQ_223
__AACCGG_CCGG__AT__AA
24._GC-03-023-2-12
AAGGAACCAAGGCCGGGGAATTGGGGAA
25._GU_168_/H
__AACCAA_CCGG__TT__AA
 4344454647484950515253545556
_Input profile
AAGGGGGGTTGGAACCAAGGCCGGCCCC
1._RUQ_223
________AA___CCCC
2._GU_168_/H
___GG____AA_GG_CCCC
3._GC-03-023-2-12
TTGGGGGGTTCC_CCAAGGGGGGCCCC
4._GC-03-023-2-12
TTGGGGGGTTCC_CCAAGGGGGGCCCC
5._GC-03-023-2-12
TTGGGGGGTTCC_CCAAGGGGGGCCCC
6._GC-03-023-2-12
TTGGGGGGTTCC_CCAAGGGGGGCCCC
7._GC-03-023-2-12
TTGGGGGGTTCC_CCAAGGGGGGCCCC
8._GC-03-023-2-12
TTGGGGGGTTCC_CCAAGGGGGGCCCC
9._GC-03-023-2-12
TTGGGGGGTTCC_CCAAGGGGGGCCCC
10._GC-03-023-2-12
TTGGGGGGTTCC_CCAAGGGGGGCCCC
11._GU_168_/H
___GG____AA_GG_CCCC
12._GU_168_/H
___GG____AA_GG_CCCC
13._GU_168_/H
___GG____AA_GG_CCCC
14._GU_168_/H
___GG____AA_GG_CCCC
15._GU_168_/H
___GG____AA_GG_CCCC
16._GU_168_/H
___GG____AA_GG_CCCC
17._GU_168_/H
___GG____AA_GG_CCCC
18._GC-03-023-2-12
TTGGGGGGTTCC_CCAAGGGGGG_CC
19._GC-03-023-2-12
TTGGGGGGTTCC_CCAAGGGGGGCCCC
20._GU_168_/H
___GG____AA_GG_CCCC
21._GU_168_/H
___GG____AA_GG__CC
22._RUQ_223
_____CC__AA_GG_CCCC
23._RUQ_223
___AG____AA_GG_CCCC
24._GC-03-023-2-12
TTGGGGGGTTCC_CCCCGGTTAACCCC
25._GU_168_/H
___GG____CC_TT_CCCC
 5758596061626364656667686970
_Input profile
GGGGGGAGAACCAAAACCAAAAAACCGG
1._RUQ_223
_CC___GGAA____AACC_
2._GU_168_/H
__CC__GG________
3._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG_
4._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG_
5._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG_
6._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG_
7._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG_
8._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG_
9._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG_
10._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG_
11._GU_168_/H
__CC__GG________
12._GU_168_/H
__CC__GG________
13._GU_168_/H
__CC__GG________
14._GU_168_/H
__CC__GG________
15._GU_168_/H
__CC__GG________
16._GU_168_/H
__CC__GG________
17._GU_168_/H
__CC__GG________
18._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG_
19._GC-03-023-2-12
CCCCCCAAAAGGAATTGGTTTTAAGG_
20._GU_168_/H
__CC__GG________
21._GU_168_/H
__CC__GG________
22._RUQ_223
_CCCC__GGAATT__TTAA__
23._RUQ_223
__CC__GG________
24._GC-03-023-2-12
CCTTTTAAAAGGGGTTTTTTTTAAGG_
25._GU_168_/H
__TT__GG________
 7172737475767778798081   
_Input profile
CCGGGGGGCCGGGGGGAAGGGGX_XX_XX_X
1._RUQ_223
GG__GG______AGX_XX_XX_X
2._GU_168_/H
GGCC___CCGG_AACCGGX_XX_XX_X
3._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
4._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
5._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
6._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
7._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
8._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
9._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
10._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
11._GU_168_/H
GGCC___CCGG_AACCGGX_XX_XX_X
12._GU_168_/H
GGCC___CCGG_AACCGGX_XX_XX_X
13._GU_168_/H
GGCC___CCGG_AACCGGX_XX_XX_X
14._GU_168_/H
GGCC___CCGG_AACCGGX_XX_XX_X
15._GU_168_/H
GGCC___CCGG_AACCGGX_XX_XX_X
16._GU_168_/H
GGCC___CCGG_AACCGGX_XX_XX_X
17._GU_168_/H
GGCC___CCGG_AACCGGX_XX_XX_X
18._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
19._GC-03-023-2-12
GGCCCCGGCCCCGGCCAACCGGX_XX_XX_X
20._GU_168_/H
GGCC___CCGG_AACCGGX_XX_XX_X
21._GU_168_/H
GGCC___CCGG_AACCGGX_XX_XX_X
22._RUQ_223
GGCC_-CC_____AGX_XX_XX_X
23._RUQ_223
GGCC___CCGG_AACTAGX_XX_XX_X
24._GC-03-023-2-12
GGCCCC_CCTTCCCCAATTGGX_XX_XX_X
25._GU_168_/H
GGCC___TTCC_AATTGGX_XX_XX_X

Input profile: GU_168_/H GC-03-23-2-12

 
Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_168_/H RUQ_223

73.5 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._GU_168_/H

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 7 > FP
 Dapeng Zhang, 2016

3._GU_168_/H GC-03-023-2-12

48.1 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

4._GU_168_/H GC-03-023-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

5._GU_168_/H GC-03-023-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

6._GU_168_/H GC-03-023-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP1
 Mars, 2018

7._GU_168_/H GC-03-023-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

8._GU_168_/H GC-03-023-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._GU_168_/H GC-03-023-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._GU_168_/H GC-03-023-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

11._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 4
 Dapeng Zhang, 2016

13._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 6
 Dapeng Zhang, 2016

14._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 13
 Dapeng Zhang, 2016

15._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 15
 Dapeng Zhang, 2016

16._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 1 > FP
 Dapeng Zhang, 2016

17._GU_168_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 10 > F
 Dapeng Zhang, 2016

18._GU_168_/H GC-03-023-2-12

46.8 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

19._GU_168_/H GC-03-023-2-12

46.8 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

20._GU_168_/H

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 3
 Dapeng Zhang, 2016

21._GU_168_/H

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 12 > F
 Dapeng Zhang, 2016

22._GU_168_/H RUQ_223

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._GU_168_/H RUQ_223

44.1 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._GU_168_/H GC-03-023-2-12

34.6 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

25._GU_168_/H

33.8 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 16
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998