SNP Profiles of GU 154 /C   View Data

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 Key

 1234567891011121314
_Input profile
CCACAACCAAGGGGCCAAGGGGAAGGAA
1._GU_154_/C
______GG_AA_____
2._GU_154_/C
_____CCGG_AA_____
3._GU_154_/C
_____CCGG_AA_____
4._GU_154_/C
_____CCGG_AA_____
5._GU_154_/C
_____CCGG_AA_____
6._GU_154_/C
_____CCGG_AA_____
7._GU_154_/C
_____CCGG_AA_____
8._GU_154_/C
_____CCGG_AA_____
9._GU_154_/C
_____CCGG_AA_____
10._GU_154_/C
_____CCGG_AA_____
11._GU_154_/C
_____CCGG_AA_____
12._GU_154_/C
_____CCGG_AA_____
13._GU_154_/C
_____CCGG_AA_____
14._GU_154_/C
_____CCGG_AA_____
15._GC-01-078-4-14
CCACAACCTT_GGGGAACCGGTTCCTT
16._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
17._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
18._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
19._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
20._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
21._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
22._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
23._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
24._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
25._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
26._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
27._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
28._GC-01-078-4-14
CCACAACCTTCCGGGGAACCGGTTCCTT
 1516171819202122232425262728
_Input profile
AAAAAAAAGGAAGGAAGGCGGGAAAAGG
1._GU_154_/C
_TTTT__TT_AACCCGGGTTTTCC
2._GU_154_/C
_TTTT__TT_AACCCGGGTTTTCC
3._GU_154_/C
_TTTT__TT_AACCCGGGTTTTCC
4._GU_154_/C
_TTTT__TT_AACCCGGGTTTTCC
5._GU_154_/C
_TTTT__TT_AACCCGGGTTTTCC
6._GU_154_/C
_TTTT__TT_AACCCGGGTTTTCC
7._GU_154_/C
_TTTT__TT_AACCCGGGTTTTCC
8._GU_154_/C
_TTTT__TT_AACCCGGGTTTTCC
9._GU_154_/C
_TTTT__TT_AACCCGGGTTTTCC
10._GU_154_/C
_TTTT__TT_AACCCGGGTTTTCC
11._GU_154_/C
_TTTT__TT_AACCCGGGTTTTCC
12._GU_154_/C
_TTTT__TT_AACCCGGGTTTTCC
13._GU_154_/C
_TTTT__TT_AACCCGGGTTTTCC
14._GU_154_/C
_TTTT__TT_AACCCGGGTTTTCC
15._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
16._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
17._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
18._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
19._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
20._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
21._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
22._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
23._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
24._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
25._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
26._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
27._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
28._GC-01-078-4-14
TTTTTTTTGGTTCCAACCCGGGTTTTCC
 2930313233343536373839404142
_Input profile
TTGGAAGGGGGGGGGGCCTTATGGGGAA
1._GU_154_/C
__AACCGG_CCGG__AT__AA
2._GU_154_/C
__AACCGG_CCGG__AT__AA
3._GU_154_/C
__AACCGG_CCGG__AT__AA
4._GU_154_/C
__AACCGG_CCGG__AT__AA
5._GU_154_/C
__AACCGG_CCGG__AT___
6._GU_154_/C
__AACCGG_CCGG__AT__AA
7._GU_154_/C
__AACCGG_CCGG__AT__AA
8._GU_154_/C
__AACCGG_CCGG__AT__AA
9._GU_154_/C
__AACCGG_CCGG__AT__AA
10._GU_154_/C
___CCGG_CCGG__AT__AA
11._GU_154_/C
__AACCGG_CCGG__AT__AA
12._GU_154_/C
__AACCGG_CCGG__AT__AA
13._GU_154_/C
__AACCGG_CCGG__AT__AA
14._GU_154_/C
__AACCGG_CCGG__AT__AA
15._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
16._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
17._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
18._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
19._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
20._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
21._GC-01-078-4-14
AAGG_CCGGGGCCGGGGAAATGGGGAA
22._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
23._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
24._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
25._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
26._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
27._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGGAA
28._GC-01-078-4-14
AAGGAACCGGGGCCGGGGAAATGGGG_
 4344454647484950515253545556
_Input profile
AGGGGGGGTTGGAACCAAGGCCGGCCAC
1._GU_154_/C
___GG____AA_GG_CCAC
2._GU_154_/C
___GG____AA_GG_CCAC
3._GU_154_/C
___GG____AA_GG_CCAC
4._GU_154_/C
___GG____AA_GG_CCAC
5._GU_154_/C
___GG____AA_GG_CCAC
6._GU_154_/C
___GG____AA_GG_CCAC
7._GU_154_/C
___GG____AA_GG_CCAC
8._GU_154_/C
___GG____AA_GG_CCAC
9._GU_154_/C
___GG____AA_GG_CCAC
10._GU_154_/C
___GG____AA_GG_CCAC
11._GU_154_/C
___GG____AA_GG_CCAC
12._GU_154_/C
___GG____AA_GG_CCAC
13._GU_154_/C
___GG____AA_GG_CCAC
14._GU_154_/C
___GG____AA_GG_CCAC
15._GC-01-078-4-14
CTGGGGGGTTCC_CCAAGGGGGGCCAC
16._GC-01-078-4-14
CTGGGGGGTTCC_CCAAGGGGGGCCAC
17._GC-01-078-4-14
CTGGGGGGTTCC_CCAAGGGGGGCCAC
18._GC-01-078-4-14
CTGGGGGGTTCC_CCAAGGGGGGCCAC
19._GC-01-078-4-14
CTGGGGGGTTCC_CCAAGGGGGGCCAC
20._GC-01-078-4-14
CTGGGGGGTTCC_CCAAGGGG_CCAC
21._GC-01-078-4-14
CTGGGGGGTTCC_CCAAGGGGGGCCAC
22._GC-01-078-4-14
CTGGGGGGTTCC_CCAAGGGGGGCCAC
23._GC-01-078-4-14
CTGGGGGGTTCC_CCAAGGGGGGCCAC
24._GC-01-078-4-14
CTGGGGGGTTCC_CCAAGGGGGGCCAC
25._GC-01-078-4-14
CTGGGGGGTTCC_CCAAGGGGGGCCAC
26._GC-01-078-4-14
CTGGGGGGTTCC_CCAAGGGGGGCCAC
27._GC-01-078-4-14
CTGGGGGGTTCC_CCAAGGGGGGCCAC
28._GC-01-078-4-14
CTGGGGGGTTCC_CCAAGGGGGGCCAC
 5758596061626364656667686970
_Input profile
GGGGGGGGAACCAAAACCAAAAAACCGG
1._GU_154_/C
__CC__GG________
2._GU_154_/C
__CC__GG________
3._GU_154_/C
__CC__GG________
4._GU_154_/C
__CC__GG________
5._GU_154_/C
__CC__GG________
6._GU_154_/C
__CC__GG________
7._GU_154_/C
__CC__GG________
8._GU_154_/C
__CC__GG________
9._GU_154_/C
__CC__GG________
10._GU_154_/C
__CC__GG________
11._GU_154_/C
__CC__GG________
12._GU_154_/C
__CC__GG________
13._GU_154_/C
__CC__GG________
14._GU_154_/C
__CC__GG________
15._GC-01-078-4-14
CCCCCCAA_GGAATTGGTTTTAAGG_
16._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG_
17._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG_
18._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG_
19._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG_
20._GC-01-078-4-14
CCCCCCAA_GGAATTGGTTTTAAGG_
21._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG_
22._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG_
23._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG_
24._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG_
25._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG_
26._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG_
27._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG_
28._GC-01-078-4-14
CCCCCCAAAAGGAATTGGTTTTAAGG_
 7172737475767778798081   
_Input profile
CCGGGGGGCCGGGGGGAAGGAGX_XX_XX_X
1._GU_154_/C
GGCC___CCGG_AACCAGX_XX_XX_X
2._GU_154_/C
GGCC___CCGG_AACCAGX_XX_XX_X
3._GU_154_/C
GGCC___CCGG_AACCAGX_XX_XX_X
4._GU_154_/C
GGCC___CCGG_AACCAGX_XX_XX_X
5._GU_154_/C
GGCC___CCGG_AACCAGX_XX_XX_X
6._GU_154_/C
GGCC___CCGG_AACCAGX_XX_XX_X
7._GU_154_/C
GGCC___CCGG_AACCAGX_XX_XX_X
8._GU_154_/C
GGCC___CCGG_AACCAGX_XX_XX_X
9._GU_154_/C
GGCC___CCGG_AACCAGX_XX_XX_X
10._GU_154_/C
GGCC___CCGG_AACCAGX_XX_XX_X
11._GU_154_/C
GGCC___CCGG_AACCAGX_XX_XX_X
12._GU_154_/C
GGCC___CCGG_AACCAGX_XX_XX_X
13._GU_154_/C
GGCC___CCGG_AACCAGX_XX_XX_X
14._GU_154_/C
GGCC___CCGG_AACCAGX_XX_XX_X
15._GC-01-078-4-14
GGCCCCGG_CCGGCCAACCAGX_XX_XX_X
16._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
17._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
18._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
19._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
20._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
21._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
22._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
23._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
24._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
25._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
26._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
27._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X
28._GC-01-078-4-14
GGCCCCGGCCCCGGCCAACCAGX_XX_XX_X

Input profile: GU_154_/C GC-01-78-4-14

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 14, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_154_/C

51.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 7
 Dapeng Zhang, 2016

2._GU_154_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 12 > F
 Dapeng Zhang, 2016

3._GU_154_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._GU_154_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 10 > F
 Dapeng Zhang, 2016

5._GU_154_/C

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 1 > FP
 Dapeng Zhang, 2016

6._GU_154_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 16
 Dapeng Zhang, 2016

7._GU_154_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 14
 Dapeng Zhang, 2016

8._GU_154_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 13
 Dapeng Zhang, 2016

9._GU_154_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 9
 Dapeng Zhang, 2016

10._GU_154_/C

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 8
 Dapeng Zhang, 2016

11._GU_154_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 5
 Dapeng Zhang, 2016

12._GU_154_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 4
 Dapeng Zhang, 2016

13._GU_154_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 3
 Dapeng Zhang, 2016

14._GU_154_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 15 > F
 Dapeng Zhang, 2016

15._GU_154_/C GC-01-078-4-14

47.4 %
76 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

16._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

17._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

18._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

19._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

20._GU_154_/C GC-01-078-4-14

46.8 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

21._GU_154_/C GC-01-078-4-14

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

22._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

23._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

24._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

25._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

26._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

27._GU_154_/C GC-01-078-4-14

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

28._GU_154_/C GC-01-078-4-14

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

 

 Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998