SNP Profiles of GU 147 /H   View Data

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 1234567891011121314
_Input profile
CCAAGGCCAAGGGGCCAAGGGGAAGGAA
1._RUQ_222
CCAAAACCAAGGGGCCAAGGGGAAGGAA
2._GU_147_/H
_____CCGG_AA_____
3._RUQ_222
_____CCGG_AA_____
4._GU_147_/H
_____CCGG_AA_____
5._GU_147_/H
_____CCGG_AA_____
6._GU_147_/H
_____CCGG_AA_____
7._GU_147_/H
_____CCGG_AA_____
8._GU_147_/H
_____CCGG_AA_____
9._GU_147_/H
_____CCGG_AA_____
10._GU_147_/H
_____CCGG_AA_____
11._GU_147_/H
_____CCGG_AA_____
12._RUQ_222
_____CC_GG__GG___
13._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
14._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
15._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
16._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
17._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
18._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
19._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
20._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
21._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
 1516171819202122232425262728
_Input profile
AAAAAAAAGGAAGGAAGGGGGGAAAAGG
1._RUQ_222
AAAAAAAAGGAAGGAAGGCCAGAAAAGG
2._GU_147_/H
_TTTT__TT_AACCCCGGTTTTCC
3._RUQ_222
_TTTT__TT_AACCCCGGTTTTCC
4._GU_147_/H
_TTTT__TT_AACCCCGGTTTTCC
5._GU_147_/H
_TTTT__TT_AACCCCGGTTTTCC
6._GU_147_/H
_TTTT__TT__CCCCGGTTTTCC
7._GU_147_/H
_TTTT__TT_AACCCCGGTTTTCC
8._GU_147_/H
_TTTT__TT_AACCCCGGTTTTCC
9._GU_147_/H
_TTTT__TT_AACCCCGGTTTTCC
10._GU_147_/H
_TTTT__TT_AACCCCGGTTTTCC
11._GU_147_/H
_TTTT__TT_AACCCCGGTTTTCC
12._RUQ_222
_TT_TT__CCAACCCCGGTTTT_
13._GC-01-080-4-16
TTTTTTTTGGTTCCAACCCCGGTTTTCC
14._GC-01-080-4-16
TTTTTTTTGGTTCC_CCCCGGTTTTCC
15._GC-01-080-4-16
TTTTTTTTGGTTCCAACCCCGGTTTTCC
16._GC-01-080-4-16
TTTTTTTTGGTTCCAACCCCGGTTTTCC
17._GC-01-080-4-16
TTTTTTTTGGTTCCAACCCCGGTTTTCC
18._GC-01-080-4-16
TTTTTTTTGGTTCCAACCCCGGTTTTCC
19._GC-01-080-4-16
TTTTTTTTGGTTCCAACCCCGGTTTTCC
20._GC-01-080-4-16
TTTTTTTTGGTTCCAACCCCGGTTTTCC
21._GC-01-080-4-16
TTTTTTTTGGTTCCAACCCCGGTTTTCC
 2930313233343536373839404142
_Input profile
TTGGAAGGGGGGGGGGTTATGGGGAAAG
1._RUQ_222
TTGGAAGGGGGGGGGGTTATGGGGAAAA
2._GU_147_/H
__AACCGG_CCGG_AT__AA_
3._RUQ_222
__AACCGG_CCGG_AT__AA_
4._GU_147_/H
__AACCGG_CCGG_AT__AA_
5._GU_147_/H
__AACCGG_CCGG_AT__AA_
6._GU_147_/H
__AACCGG_CCGG_AT__AA_
7._GU_147_/H
__AACCGG_CCGG_AT__AA_
8._GU_147_/H
__AACCGG_CCGG_AT__AA_
9._GU_147_/H
__AACCGG_CCGG_AT__AA_
10._GU_147_/H
__AACCGG_CCGG_AT__AA_
11._GU_147_/H
__AACCGG_CCGG_AT__AA_
12._RUQ_222
_GGAACCGG_CC___GGGGAA_
13._GC-01-080-4-16
AAGGAACCGGGGCCGGAAATGGGGAACT
14._GC-01-080-4-16
AAGGAACCGGGGCCGGAAATGGGGAACT
15._GC-01-080-4-16
AAGGAACCGGGGCCGGAAATGGGGAACT
16._GC-01-080-4-16
AAGGAACCGGGGCCGGAAATGGGGAACT
17._GC-01-080-4-16
AAGGAACCGGGGCCGGAAATGGGGAACT
18._GC-01-080-4-16
AAGGAACCGGGGCCGGAAATGGGGAACT
19._GC-01-080-4-16
AAGGAACCGGGGCCGGAAATGGGGAACT
20._GC-01-080-4-16
AAGGAACCGGGGCCGGAAATGGGGAACT
21._GC-01-080-4-16
AAGGAACCGGGGCCGGAAATGGGGAACT
 4344454647484950515253545556
_Input profile
GGGGGGTTGGAACCAAGGCCGGCCAAGG
1._RUQ_222
GGGGGGTTGGAACCAAGGCCGGCCCCGG
2._GU_147_/H
__GG____AA_GG_CCAA_
3._RUQ_222
__GG____AA_GG_CCAA_
4._GU_147_/H
__GG____AA_GG_CCAA_
5._GU_147_/H
__GG____AA_GG_CCAA_
6._GU_147_/H
__GG____AA_GG_CCAA_
7._GU_147_/H
__GG____AA_GG_CCAA_
8._GU_147_/H
__GG____AA_GG_CCAA_
9._GU_147_/H
__GG____AA_GG_CCAA_
10._GU_147_/H
__GG____AA_GG_CCAA_
11._GU_147_/H
__GG____AA_GG_CCAA_
12._RUQ_222
____CC__AA_GG_CCAA_
13._GC-01-080-4-16
GGGGGGTTCC_CCAAGGGGGGCCAACC
14._GC-01-080-4-16
GGGGGGTTCC_CCAAGGGGGGCCAACC
15._GC-01-080-4-16
GGGGGGTTCC_CCAAGGGGGGCCAACC
16._GC-01-080-4-16
GGGGGGTTCC_CCAAGGGGGGCCAACC
17._GC-01-080-4-16
GGGGGGTTCC_CCAAGGGGGGCCAACC
18._GC-01-080-4-16
GGGGGGTTCC_CCAAGGGGGGCCAACC
19._GC-01-080-4-16
GGGGGGTTCC_CCAAGGGGGGCCAACC
20._GC-01-080-4-16
GGGGGGTTCC_CCAAGGGGGGCCAACC
21._GC-01-080-4-16
GGGGGGTTCC_CCAAGGGGGGCCAACC
 5758596061626364656667686970
_Input profile
GGAGGGAACCAAAACCAAAAAACCGGCC
1._RUQ_222
GGGGAGAACCAAAAACAAAAAACCGGCC
2._GU_147_/H
_CT__GG________GG
3._RUQ_222
_CT__GG________GG
4._GU_147_/H
_CT__GG________GG
5._GU_147_/H
_CT__GG________GG
6._GU_147_/H
_CT__GG________GG
7._GU_147_/H
_CT__GG________GG
8._GU_147_/H
_CT__GG________GG
9._GU_147_/H
_CT__GG________GG
10._GU_147_/H
_CT__GG________GG
11._GU_147_/H
_CT__GG________GG
12._RUQ_222
CCCT__GGAATT__TTAA__GG
13._GC-01-080-4-16
CCCTAAAAGGAATTGGTTTTAAGG_GG
14._GC-01-080-4-16
CCCTAAAAGGAATTGGTTTTAAGG_GG
15._GC-01-080-4-16
CCCTAAAAGGAATTGGTTTTAAGG_GG
16._GC-01-080-4-16
CCCTAAAAGGAATTGGTTTTAAGG_GG
17._GC-01-080-4-16
CCCTAAAAGGAATTGGTTTTAAGG_GG
18._GC-01-080-4-16
CCCTAAAAGGAATTGGTTTTAAGG_GG
19._GC-01-080-4-16
CCCTAAAAGGAATTGGTTTTAAGG_GG
20._GC-01-080-4-16
CCCTAAAAGGAATTGGTTTTAAGG_GG
21._GC-01-080-4-16
CCCTAAAAGGAATTGGTTTTAAGG_GG
 71727374757677787980    
_Input profile
GGGGGGCCGGGGGGAAGGGGX_XX_XX_XX_X
1._RUQ_222
GGGGGGCCGGGGGGAAAGAGX_XX_XX_XX_X
2._GU_147_/H
CC___CCGG_AACCGGX_XX_XX_XX_X
3._RUQ_222
CC___CCGG_AACCGGX_XX_XX_XX_X
4._GU_147_/H
CC___CCGG_AACCGGX_XX_XX_XX_X
5._GU_147_/H
CC___CCGG_AACCGGX_XX_XX_XX_X
6._GU_147_/H
CC___CCGG_AACCGGX_XX_XX_XX_X
7._GU_147_/H
CC___CCGG_AACCGGX_XX_XX_XX_X
8._GU_147_/H
CC___CCGG_AACCGGX_XX_XX_XX_X
9._GU_147_/H
CC___CCGG_AACCGGX_XX_XX_XX_X
10._GU_147_/H
CC___CCGG_AACCGGX_XX_XX_XX_X
11._GU_147_/H
CC___CCGG_AACCGGX_XX_XX_XX_X
12._RUQ_222
CC_-CC_____GGX_XX_XX_XX_X
13._GC-01-080-4-16
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
14._GC-01-080-4-16
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
15._GC-01-080-4-16
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
16._GC-01-080-4-16
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
17._GC-01-080-4-16
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
18._GC-01-080-4-16
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
19._GC-01-080-4-16
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
20._GC-01-080-4-16
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
21._GC-01-080-4-16
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X

Input profile: GU_147_/H GC-01-80-4-16

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 16, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_147_/H RUQ_222

90.6 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._GU_147_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 7
 Dapeng Zhang, 2016

3._GU_147_/H RUQ_222

47.1 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._GU_147_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 15 > F
 Dapeng Zhang, 2016

5._GU_147_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 14 > F
 Dapeng Zhang, 2016

6._GU_147_/H

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 1 > FP
 Dapeng Zhang, 2016

7._GU_147_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 16
 Dapeng Zhang, 2016

8._GU_147_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 13
 Dapeng Zhang, 2016

9._GU_147_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 12
 Dapeng Zhang, 2016

10._GU_147_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 5 > FP
 Dapeng Zhang, 2016

11._GU_147_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._GU_147_/H RUQ_222

43.2 %
37 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

14._GU_147_/H GC-01-080-4-16

46.8 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

17._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

19._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

20._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

21._GU_147_/H GC-01-080-4-16

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

 

 Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP316 38TcSNP32 39TcSNP329 40TcSNP364
41TcSNP372 42TcSNP413 43TcSNP418 44TcSNP42 45TcSNP429
46TcSNP430 47TcSNP448 48TcSNP497 49TcSNP521 50TcSNP529
51TcSNP547 52TcSNP560 53TcSNP561 54TcSNP577 55TcSNP591
56TcSNP60 57TcSNP602 58TcSNP619 59TcSNP653 60TcSNP689
61TcSNP723 62TcSNP731 63TcSNP75 64TcSNP751 65TcSNP776
66TcSNP799 67TcSNP823 68TcSNP836 69TcSNP860 70TcSNP872
71TcSNP891 72TcSNP894 73TcSNP899 74TcSNP90 75TcSNP917
76TcSNP929 77TcSNP944 78TcSNP953 79TcSNP994 80TcSNP998