SNP Profiles of GU%20136%20/H   View Data

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 Key

 1234567891011121314
_Input profile
CCAAGGCCAAGGGGCCAAGGGGAAGGAA
1._RUQ_221
______GG_______
2._GU_136_/H
_____CCGG_AA_____
3._GU_136_/H
_____CCGG_AA_____
4._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
5._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
6._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
7._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
8._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
9._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
10._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
11._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
12._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
13._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
14._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
15._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
16._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
17._RUQ_221
_____CCGG_AA_____
18._GU_136_/H
_____CCGG_AA_____
19._GU_136_/H
_____CCGG_AA_____
20._GU_136_/H
_____CCGG_AA_____
21._GU_136_/H
_____CCGG_AA_____
22._GU_136_/H
_____CCGG_AA_____
23._GU_136_/H
_____CCGG_AA_____
24._GU_136_/H
_____CCGG_AA_____
25._GU_136_/H
_____CCGG_AA_____
26._GU_136_/H
_____CCGG_AA_____
27._GU_136_/H
_____CCGG_AA_____
28._GU_136_/H
_____CCGG_AA_____
29._GU_136_/H
_____CCGG_AA_____
30._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
31._GC-03-019-2-08
CCAAGGCCTTCCGGGGAACCGGTTCCTT
32._GU_136_/H
_____CCGG_AA_____
33._RUQ_221
_____CC_GG__GG___
 1516171819202122232425262728
_Input profile
AAAAAAAAACGGAAGGAAGGCCGGAAAA
1._RUQ_221
_TT______AA_GG___
2._GU_136_/H
__TT___TT_AACCGGGGTTTT
3._GU_136_/H
_TTTT___TT_AACCGGGG_TT
4._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGG_TT
5._GC-03-019-2-08
TT_TTTT_GGTTCCAACCGGGGTTTT
6._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
7._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
8._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
9._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
10._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
11._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
12._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
13._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
14._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
15._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
16._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
17._RUQ_221
_TTTT_CC_TT_AACCGGGGTTTT
18._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
19._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
20._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
21._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
22._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
23._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
24._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
25._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
26._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
27._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
28._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
29._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
30._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
31._GC-03-019-2-08
TTTTTTTT_GGTTCCAACCGGGGTTTT
32._GU_136_/H
_TTTT___TT_AACCGGGGTTTT
33._RUQ_221
_TT_TT___CCAACCGGGGTTTT
 2930313233343536373839404142
_Input profile
GGTTGGAAGGGGGGGGGGTTATGGGGAA
1._RUQ_221
_____GG_____GG__
2._GU_136_/H
CC__AACCGG_CCGG_AT__AA
3._GU_136_/H
CC__AACCGG_CCGG_AT__AA
4._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
5._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
6._GC-03-019-2-08
CC_GGAACCGGGGCCGGAAATGGGGAA
7._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
8._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
9._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
10._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
11._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
12._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
13._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
14._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
15._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
16._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
17._RUQ_221
CC__AACCGG_CCGG_AT__AA
18._GU_136_/H
CC__AACCGG_CCGG_AT__AA
19._GU_136_/H
CC__AACCGG_CCGG_AT__AA
20._GU_136_/H
CC__AACCGG_CCGG_AT__AA
21._GU_136_/H
CC__AACCGG_CCGG_AT__AA
22._GU_136_/H
CC__AACCGG_CCGG_AT__AA
23._GU_136_/H
CC__AACCGG_CCGG_AT__AA
24._GU_136_/H
CC__AACCGG_CCGG_AT__AA
25._GU_136_/H
CC__AACCGG_CCGG_AT__AA
26._GU_136_/H
CC__AACCGG_CCGG_AT__AA
27._GU_136_/H
CC__AACCGG_CCGG_AT__AA
28._GU_136_/H
CC__AACCGG_CCGG_AT__AA
29._GU_136_/H
CC__AACCGG_CCGG_AT__AA
30._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
31._GC-03-019-2-08
CCAAGGAACCGGGGCCGGAAATGGGGAA
32._GU_136_/H
CC__AACCGG_CCGG_AT__AA
33._RUQ_221
__GGAACCGG_CC___GGGGAA
 4344454647484950515253545556
_Input profile
AAGGGGGGTTGGAACCAAGGCCGGCCCC
1._RUQ_221
________AA___CCCC
2._GU_136_/H
___GG____AA_GG_CCCC
3._GU_136_/H
___GG____AA_GG_CCCC
4._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
5._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
6._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
7._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
8._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
9._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
10._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
11._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
12._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
13._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
14._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
15._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
16._GC-03-019-2-08
TTGGGGGGTTCC_CCAAGGGGGGCCCC
17._RUQ_221
___GG____AA_GG_CCCC
18._GU_136_/H
___GG____AA_GG_CCCC
19._GU_136_/H
___GG____AA_GG_CCCC
20._GU_136_/H
___GG____AA_GG_CCCC
21._GU_136_/H
___GG____AA_GG_CCCC
22._GU_136_/H
___GG____AA_GG_CCCC
23._GU_136_/H
___GG____AA_GG_CCCC
24._GU_136_/H
___GG____AA_GG_CCCC
25._GU_136_/H
___GG____AA_GG_CCCC
26._GU_136_/H
___GG____AA_GG_CCCC
27._GU_136_/H
___GG____AA_GG_CCCC
28._GU_136_/H
___GG____AA_GG_CCCC
29._GU_136_/H
___GG____AA_GG_CCCC
30._GC-03-019-2-08
TTGGGG_TTCC_CCAAGGGGGGCCCC
31._GC-03-019-2-08
TTGG_GGTTCC_CCAAGGGGGGCCCC
32._GU_136_/H
________AA_GG_CCCC
33._RUQ_221
_____CC__AA_GG_CCCC
 5758596061626364656667686970
_Input profile
GGGGGGGGAACCAAAACCAAAAAACCGG
1._RUQ_221
_CC___GGAA____AACC_
2._GU_136_/H
__CC__GG________
3._GU_136_/H
__CC__GG________
4._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
5._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
6._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
7._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
8._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
9._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
10._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
11._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
12._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
13._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
14._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
15._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
16._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
17._RUQ_221
__CC__GG________
18._GU_136_/H
__CC__GG________
19._GU_136_/H
__CC__GG________
20._GU_136_/H
__CC__GG________
21._GU_136_/H
__CC__GG________
22._GU_136_/H
__CC__GG________
23._GU_136_/H
__CC__GG________
24._GU_136_/H
__CC__GG________
25._GU_136_/H
__CC__GG________
26._GU_136_/H
__CC__GG________
27._GU_136_/H
__CC__GG________
28._GU_136_/H
__CC__GG________
29._GU_136_/H
__CC__GG________
30._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
31._GC-03-019-2-08
CCCCCCAAAAGGAATTGGTTTTAAGG_
32._GU_136_/H
__CC__GG________
33._RUQ_221
_CCCC__GGAATT__TTAA__
 7172737475767778798081   
_Input profile
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
1._RUQ_221
GG__GG______AAX_XX_XX_X
2._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
3._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
4._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
5._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
6._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
7._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
8._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
9._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
10._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
11._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
12._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
13._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
14._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
15._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
16._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
17._RUQ_221
GGCC___CCGG_AACCAAX_XX_XX_X
18._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
19._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
20._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
21._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
22._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
23._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
24._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
25._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
26._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
27._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
28._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
29._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
30._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
31._GC-03-019-2-08
GGCCCCGGCCCCGGCCAACCAAX_XX_XX_X
32._GU_136_/H
GGCC___CCGG_AACCAAX_XX_XX_X
33._RUQ_221
GGCC_-CC_____AAX_XX_XX_X

Input profile: GU_136_/H GC-03-19-2-8

 
Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 8, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_136_/H RUQ_221

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._GU_136_/H

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 9 > FP
 Dapeng Zhang, 2016

3._GU_136_/H

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 12
 Dapeng Zhang, 2016

4._GU_136_/H GC-03-019-2-08

48.1 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

5._GU_136_/H GC-03-019-2-08

48.1 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

6._GU_136_/H GC-03-019-2-08

48.1 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

7._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

8._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

9._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

10._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

11._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

12._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

13._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._GU_136_/H GC-03-019-2-08

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

17._GU_136_/H RUQ_221

47.1 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

19._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 2
 Dapeng Zhang, 2016

20._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 3
 Dapeng Zhang, 2016

21._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 4
 Dapeng Zhang, 2016

22._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 6
 Dapeng Zhang, 2016

23._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 8
 Dapeng Zhang, 2016

24._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 11
 Dapeng Zhang, 2016

25._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 13
 Dapeng Zhang, 2016

26._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 16
 Dapeng Zhang, 2016

27._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 10 > F
 Dapeng Zhang, 2016

28._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 14 > F
 Dapeng Zhang, 2016

29._GU_136_/H

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 7 > FP
 Dapeng Zhang, 2016

30._GU_136_/H GC-03-019-2-08

46.8 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

31._GU_136_/H GC-03-019-2-08

46.8 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

32._GU_136_/H

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 5
 Dapeng Zhang, 2016

33._GU_136_/H RUQ_221

44.4 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998