SNP Profiles of GU 133 /C   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCACGGCCAAGGGGCCAAGGGGAAGGAA
1._MITC-000670
CCACGGCCAAGGGGCCAAGGGGAAGGAA
2._RUQ_190
_____CC____GG___
3._GU_133_/C
_____CCGG_AA_____
4._GU_133_/C
_____CCGG_AA_____
5._RUQ_190
_____CCGG_AA_____
6._GU_133_/C
_____CCGG_AA_____
7._GU_133_/C
_____CCGG_AA_____
8._GU_133_/C
_____CCGG_AA_____
9._GU_133_/C
_____CCGG_AA_____
10._GU_133_/C
_____CCGG_AA_____
11._GU_133_/C
_____CCGG_AA_____
12._GU_133_/C
_____CCGG_AA_____
13._GU_133_/C
_____CCGG_AA_____
14._GU_133_/C
_____CCGG_AA_____
15._RUQ_190
_____CC_GG__GG___
16._GC-01-116-6-13
CCACGGCCTTCCGGGGAACCGGTTCCTT
17._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
18._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
19._GC-01-116-6-13
CCACGGCCTTCCGGGGAACCGGTTCCTT
20._GC-01-116-6-13
CCACGGCCTTCCGGGGAACCGGTTCCTT
21._GC-01-116-6-13
CCACGGCCTTCCGGGGAACCGGTTCCTT
22._GC-01-116-6-13
CCACGGCCTTCCGGGGAACCGGTTCCTT
23._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
24._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
25._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
26._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
 1516171819202122232425262728
_Input profile
AAAAAAAAGGAAGGAAGGCGGGAAAAGG
1._MITC-000670
AAAAAAAAGGAAGGAAGGCGGGAAAAGG
2._RUQ_190
______CCAA_CG__TT_
3._GU_133_/C
__TT____AACCCGGGTTTTCC
4._GU_133_/C
__TT__TT_AACCCGGGTTTTCC
5._RUQ_190
_TTTT__TT_AACCCGGGGTTTCC
6._GU_133_/C
_TTTT__TT_AACCCGGGTTTTCC
7._GU_133_/C
_TTTT__TT_AACCCGGGTTTTCC
8._GU_133_/C
_TTTT__TT_AACCCGGGTTTTCC
9._GU_133_/C
_TTTT__TT_AACCCGGGTTTTCC
10._GU_133_/C
_TTTT__TT_AACCCGGGTTTTCC
11._GU_133_/C
_TTTT__TT_AACCCGGGTTTTCC
12._GU_133_/C
_TTTT__TT_AACCCGGGTTTTCC
13._GU_133_/C
_TTTT__TT_AACCCGGGTTTTCC
14._GU_133_/C
_TTTT__TT_AACCCGGGTTTTCC
15._RUQ_190
_TT_TT__CCAACCCGGGTTTT_
16._GC-01-116-6-13
TT_TTTT__CCAACCCGGGTTTTCC
17._GC-08-164-4-07
TT_TTTTGGTTCCAACCCGGGTTTTCC
18._GC-08-164-4-07
TTTTTTTTGGTTCCAACCCGGGTTTTCC
19._GC-01-116-6-13
TTTTTTTTGGTTCCAACCCGGGTTTTCC
20._GC-01-116-6-13
TTTTTTTTGGTTCCAACCCGGGTTTTCC
21._GC-01-116-6-13
TTTTTTTTGGTTCCAACCCGGGTTTTCC
22._GC-01-116-6-13
TTTTTTTTGGTTCCAACCCGGGTTTTCC
23._GC-08-164-4-07
TTTTTTTTGGTTCCAACCCGGGTTTTCC
24._GC-08-164-4-07
TTTTTTTTGGTTCCAACCCGGGTTTTCC
25._GC-08-164-4-07
TTTTTTTTGGTTCCAACCCGGGTTTTCC
26._GC-08-164-4-07
TTTTTTTTGGTTCCAACCCGGGTTTTCC
 2930313233343536373839404142
_Input profile
TTGGAAGGGGGGGGGGTTATGGGGAAAA
1._MITC-000670
TTGGAAGGGGGGGGGGTTATGGGGAAAA
2._RUQ_190
_GGAAGGGG______GGAATT
3._GU_133_/C
__AACC__CCGG_AT__AA_
4._GU_133_/C
__AACCGG_CCGG_AT__AA_
5._RUQ_190
__AACCGG_CCGG_AT__AA_
6._GU_133_/C
__AACCGG_CCGG_AT__AA_
7._GU_133_/C
__AACCGG_CCGG_AT__AA_
8._GU_133_/C
___CCGG_CCGG_AT__AA_
9._GU_133_/C
__AACCGG_CCGG_AT__AA_
10._GU_133_/C
__AACCGG_CCGG_AT__AA_
11._GU_133_/C
__AACCGG_CCGG_AT__AA_
12._GU_133_/C
__AACCGG_CCGG_AT__AA_
13._GU_133_/C
__AACC__CCGG_AT__AA_
14._GU_133_/C
__AACCGG_CCGG_AT__AA_
15._RUQ_190
_GGAACCGG_CC___GGGGAA_
16._GC-01-116-6-13
AAGGAACC_GGCCGGAAATGGGGAA_
17._GC-08-164-4-07
AAGGAACCGGGGCCGGAAATGGGGAATT
18._GC-08-164-4-07
AAGGAACCGGGGCCGGAAATGGGGAATT
19._GC-01-116-6-13
AAGGAACC_GGCCGGAAATGGGGAATT
20._GC-01-116-6-13
AAGGAACCGGGGCCGGAAATGGGGAATT
21._GC-01-116-6-13
AAGGAACCGGGGCCGGAAATGGGGAATT
22._GC-01-116-6-13
AAGGAACCGGGGCCGGAAATGGGGAATT
23._GC-08-164-4-07
AAGGAACCGGGGCCGGAAATGGGGAATT
24._GC-08-164-4-07
AAGGAACCGGGGCCGGAAATGGGGAATT
25._GC-08-164-4-07
AAGG_CCGGGGCCGGAAATGGGGAATT
26._GC-08-164-4-07
AAGGAACCGGGGCCGGAAATGGGGAATT
 4344454647484950515253545556
_Input profile
GGGGGGTTGGAACCAAGGCCGGCCACGG
1._MITC-000670
GGGGGGTTGGAACCAAGGCCGGCCACGG
2._RUQ_190
____CC______CCAC_
3._GU_133_/C
__GG____AA_GG_CCAC_
4._GU_133_/C
__GG____AA_GG_CCAC_
5._RUQ_190
__GG____AA_GG_CCAC_
6._GU_133_/C
__GG____AA_GG_CCAC_
7._GU_133_/C
__GG____AA_GG_CCAC_
8._GU_133_/C
__GG____AA_GG_CCAC_
9._GU_133_/C
__GG____AA_GG_CCAC_
10._GU_133_/C
__GG____AA_GG_CCAC_
11._GU_133_/C
__GG____AA_GG_CCAC_
12._GU_133_/C
__GG____AA_GG_CCAC_
13._GU_133_/C
__GG____AA_GG_CCAC_
14._GU_133_/C
__GG____AA_GG_CCAC_
15._RUQ_190
____CC__AA_GG_CCAC_
16._GC-01-116-6-13
GGGGGGTTCC_CCAAGGGGGGCCACCC
17._GC-08-164-4-07
GGGGGGTTCC_CCAAGGGGGGCCACCC
18._GC-08-164-4-07
GGGGGGTTCC_CCAAGGGGGGCCACCC
19._GC-01-116-6-13
GGGGGGTTCC_CCAAGGGGGGCCACCC
20._GC-01-116-6-13
GGGGGGTTCC_CCAAGGGGGGCCACCC
21._GC-01-116-6-13
GGGGGGTTCC_CCAAGGGGGGCCACCC
22._GC-01-116-6-13
GGGGGGTTCC_CCAAGGGGGGCCACCC
23._GC-08-164-4-07
GGGGGGTTCC_CCAAGGGGGGCCACCC
24._GC-08-164-4-07
GGGGGGTTCC_CCAAGGGGGGCCACCC
25._GC-08-164-4-07
GGGGGGTTCC_CCAAGGGGGGCCACCC
26._GC-08-164-4-07
GGGGGGTTCC_CCAAGGGGGGCCACCC
 5758596061626364656667686970
_Input profile
GGGGGGAACCAAAACCAAAAAACCGGCC
1._MITC-000670
GGGGGGAACCAAAACCAAAAAACCGGCC
2._RUQ_190
CC______GG____GGCC
3._GU_133_/C
_CC__GG________GG
4._GU_133_/C
_CC__GG________GG
5._RUQ_190
_CC__GG________GG
6._GU_133_/C
_CC__GG________GG
7._GU_133_/C
_CC__GG________GG
8._GU_133_/C
_CC__GG________GG
9._GU_133_/C
_CC__GG________GG
10._GU_133_/C
_CC__GG________GG
11._GU_133_/C
_CC__GG________GG
12._GU_133_/C
_CC__GG________GG
13._GU_133_/C
_CC__GG________GG
14._GU_133_/C
_CC__GG________GG
15._RUQ_190
CCCC__GGAATT__TTAA__GG
16._GC-01-116-6-13
CCCCAAAAGGAATT_TTTTAAGGAAGG
17._GC-08-164-4-07
CCCCAAAAGGAATTGGTTTTAAGG_GG
18._GC-08-164-4-07
CCCCAAAAGGAATTGGTTTTAAGG_GG
19._GC-01-116-6-13
CCCCAAAAGGAATTGGTTTTAAGG_GG
20._GC-01-116-6-13
CCCCAAAAGGAATTGGTTTTAAGG_GG
21._GC-01-116-6-13
CCCCAAAAGGAATTGGTTTTAAGG_GG
22._GC-01-116-6-13
CCCCAAAAGGAATTGGTTTTAAGG_GG
23._GC-08-164-4-07
CCCCAAAAGGAATTGGTTTTAAGG_GG
24._GC-08-164-4-07
CCCCAAAAGGAATTGGTTTTAAGG_GG
25._GC-08-164-4-07
CCCCAAAAGGAATTGGTTTTAAGG_GG
26._GC-08-164-4-07
CCCCAAAAGGAATTGGTTTTAAGG_GG
 71727374757677787980    
_Input profile
GGGGGGCCGGGGGGAAGGGGX_XX_XX_XX_X
1._MITC-000670
GGGGGGCCGGGGGGAAGGGGX_XX_XX_XX_X
2._RUQ_190
CC_______CC_X_XX_XX_XX_X
3._GU_133_/C
____CCGG_AACCGGX_XX_XX_XX_X
4._GU_133_/C
CC___CCGG_AACCGGX_XX_XX_XX_X
5._RUQ_190
CC___CCGG_AACCGGX_XX_XX_XX_X
6._GU_133_/C
CC___CCGG_AACCGGX_XX_XX_XX_X
7._GU_133_/C
CC___CCGG_AACCGGX_XX_XX_XX_X
8._GU_133_/C
CC___CCGG_AACCGGX_XX_XX_XX_X
9._GU_133_/C
CC___CCGG_AACCGGX_XX_XX_XX_X
10._GU_133_/C
CC___CCGG_AACCGGX_XX_XX_XX_X
11._GU_133_/C
CC___CCGG_AACCGGX_XX_XX_XX_X
12._GU_133_/C
CC___CCGG_AACCGGX_XX_XX_XX_X
13._GU_133_/C
CC___CCGG_AACCGGX_XX_XX_XX_X
14._GU_133_/C
CC___CCGG_AACCGGX_XX_XX_XX_X
15._RUQ_190
CC_-CC_____GGX_XX_XX_XX_X
16._GC-01-116-6-13
_CCGGCCCCGGCCAACCGGX_XX_XX_XX_X
17._GC-08-164-4-07
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
18._GC-08-164-4-07
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
19._GC-01-116-6-13
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
20._GC-01-116-6-13
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
21._GC-01-116-6-13
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
22._GC-01-116-6-13
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
23._GC-08-164-4-07
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
24._GC-08-164-4-07
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
25._GC-08-164-4-07
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X
26._GC-08-164-4-07
CCCCGGCCCCGGCCAACCGGX_XX_XX_XX_X

Input profile: GU_133_/C GC-01-116-6-13

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_133_/C MITC-000670

identical
80 shared markers

USDA-SHRS, United States of America
 Mars, 2018

2._GU_133_/C RUQ_190

59.1 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

3._GU_133_/C

53.3 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

4._GU_133_/C

51.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

5._GU_133_/C RUQ_190

50 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

7._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

8._GU_133_/C

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

9._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

10._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

11._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

12._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._GU_133_/C

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

14._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

15._GU_133_/C RUQ_190

45.9 %
37 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._GU_133_/C GC-01-116-6-13

50 %
72 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

17._GU_133_/C GC-08-164-4-07

49.4 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

18._GU_133_/C GC-08-164-4-07

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

19._GU_133_/C GC-01-116-6-13

48.1 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

20._GU_133_/C GC-01-116-6-13

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

21._GU_133_/C GC-01-116-6-13

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

22._GU_133_/C GC-01-116-6-13

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

23._GU_133_/C GC-08-164-4-07

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

24._GU_133_/C GC-08-164-4-07

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

25._GU_133_/C GC-08-164-4-07

48.1 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

26._GU_133_/C GC-08-164-4-07

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

 

 Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP316 38TcSNP32 39TcSNP329 40TcSNP364
41TcSNP372 42TcSNP413 43TcSNP418 44TcSNP42 45TcSNP429
46TcSNP430 47TcSNP448 48TcSNP497 49TcSNP521 50TcSNP529
51TcSNP547 52TcSNP560 53TcSNP561 54TcSNP577 55TcSNP591
56TcSNP60 57TcSNP602 58TcSNP619 59TcSNP653 60TcSNP689
61TcSNP723 62TcSNP731 63TcSNP75 64TcSNP751 65TcSNP776
66TcSNP799 67TcSNP823 68TcSNP836 69TcSNP860 70TcSNP872
71TcSNP891 72TcSNP894 73TcSNP899 74TcSNP90 75TcSNP917
76TcSNP929 77TcSNP944 78TcSNP953 79TcSNP994 80TcSNP998