SNP Profiles of GU 171 /C View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	CC	GG	CC	AA	GG	GG	CC	AA	GG	GG	AA	GG	AA
1._RUQ_195	CC	CC	GG	CC	AA	GG	GG	CC	AA	GG	GG	AA	GG	AA
2._GC-01-94-5-11	CC	CC	GG	CC	AA	GG	GG	CC	AA	GG	GG	AA	GG	AA
3._GU_171_/C	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
4._GU_171_/C	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
5._GU_171_/C	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
6._GU_171_/C	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
7._GU_171_/C	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
8._GU_171_/C	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
9._GU_171_/C	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
10._RUQ_195	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_
11._RUQ_195	_	_	_	_	_	CC	_	GG	_	_	GG	_	_	_
12._GC-01-094-5-11	CC	CC	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
13._GC-01-094-5-11	CC	CC	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
14._GC-01-094-5-11	CC	CC	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
15._GC-01-094-5-11	CC	CC	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
16._GC-01-094-5-11	CC	CC	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
17._GC-01-094-5-11	CC	CC	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT
18._GC-01-094-5-11	CC	CC	GG	CC	TT	CC	GG	GG	AA	CC	GG	TT	CC	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AA	AA	CC	GG	AA	GG	AA	GG	CC	AA	AA	AA
1._RUQ_195	AA	AA	AA	AA	CC	GG	AA	GG	AA	GG	CC	AA	AA	AA
2._GC-01-94-5-11	AA	AA	AA	AA	_	GG	AA	GG	AA	GG	CC	AA	AA	AA
3._GU_171_/C	_	TT	TT	_	_	_	TT	_	AA	CC	GG	AA	TT	TT
4._GU_171_/C	_	TT	TT	_	_	_	TT	_	AA	CC	GG	AA	TT	TT
5._GU_171_/C	_	TT	TT	_	_	_	TT	_	AA	CC	GG	AA	TT	TT
6._GU_171_/C	_	TT	TT	_	_	_	TT	_	AA	CC	GG	AA	TT	TT
7._GU_171_/C	_	TT	TT	_	_	_	TT	_	AA	CC	GG	AA	TT	TT
8._GU_171_/C	_	TT	TT	_	_	_	TT	_	AA	CC	GG	AA	TT	TT
9._GU_171_/C	_	TT	TT	_	_	_	TT	_	AA	CC	GG	AA	TT	TT
10._RUQ_195	_	TT	TT	_	CC	_	TT	_	AA	CC	GG	AG	TT	TT
11._RUQ_195	_	TT	_	TT	_	_	_	CC	AA	CC	GG	AA	TT	TT
12._GC-01-094-5-11	TT	TT	TT	TT	_	GG	TT	CC	AA	CC	GG	AA	TT	TT
13._GC-01-094-5-11	TT	TT	TT	TT	_	GG	TT	CC	AA	CC	GG	AA	TT	TT
14._GC-01-094-5-11	TT	TT	TT	TT	_	GG	TT	CC	AA	CC	GG	AA	TT	TT
15._GC-01-094-5-11	TT	TT	TT	TT	_	GG	TT	CC	AA	CC	GG	AA	TT	TT
16._GC-01-094-5-11	TT	TT	TT	TT	_	GG	TT	CC	AA	CC	GG	AA	TT	TT
17._GC-01-094-5-11	TT	TT	TT	TT	_	GG	TT	CC	AA	CC	GG	AA	TT	TT
18._GC-01-094-5-11	TT	TT	TT	TT	_	GG	TT	CC	AA	CC	GG	AA	TT	TT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	TT	GG	AA	GG	GG	GG	GG	GG	TT	TT	GG	GG	AA
1._RUQ_195	GG	TT	GG	AA	GG	GG	GG	GG	GG	TT	TT	GG	GG	AA
2._GC-01-94-5-11	GG	TT	GG	AA	GG	GG	GG	GG	GG	TT	TT	GG	GG	AA
3._GU_171_/C	CC	_	_	AA	CC	GG	_	CC	GG	_	TT	_	_	AA
4._GU_171_/C	CC	_	_	AA	CC	GG	_	CC	GG	_	TT	_	_	AA
5._GU_171_/C	CC	_	_	AA	CC	GG	_	CC	GG	_	TT	_	_	AA
6._GU_171_/C	CC	_	_	AA	CC	GG	_	CC	GG	_	TT	_	_	AA
7._GU_171_/C	CC	_	_	AA	CC	GG	_	CC	GG	_	TT	_	_	AA
8._GU_171_/C	CC	_	_	AA	CC	GG	_	CC	GG	_	TT	_	_	AA
9._GU_171_/C	CC	_	_	AA	CC	GG	_	CC	GG	_	TT	_	_	AA
10._RUQ_195	CC	_	_	AA	CC	GG	_	CC	GG	_	TT	_	_	AA
11._RUQ_195	_	_	GG	AA	CC	GG	_	CC	_	_	_	GG	GG	AA
12._GC-01-094-5-11	CC	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA
13._GC-01-094-5-11	CC	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA
14._GC-01-094-5-11	CC	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA
15._GC-01-094-5-11	CC	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA
16._GC-01-094-5-11	CC	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA
17._GC-01-094-5-11	CC	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA
18._GC-01-094-5-11	CC	AA	GG	AA	CC	GG	GG	CC	GG	AA	TT	GG	GG	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	GG	GG	GG	TT	GG	AA	CC	AA	GG	CC	GG	CC	CC
1._RUQ_195	AA	GG	GG	GG	TT	GG	AA	CC	AA	GG	CC	GG	CC	CC
2._GC-01-94-5-11	AA	GG	GG	GG	TT	GG	AA	CC	AA	GG	CC	GG	CC	CC
3._GU_171_/C	_	_	_	GG	_	_	_	_	AA	_	GG	_	CC	CC
4._GU_171_/C	_	_	_	GG	_	_	_	_	AA	_	GG	_	CC	CC
5._GU_171_/C	_	_	_	GG	_	_	_	_	AA	_	GG	_	CC	CC
6._GU_171_/C	_	_	_	GG	_	_	_	_	AA	_	GG	_	CC	CC
7._GU_171_/C	_	_	_	GG	_	_	_	_	AA	_	GG	_	CC	CC
8._GU_171_/C	_	_	_	GG	_	_	_	_	AA	_	GG	_	CC	CC
9._GU_171_/C	_	_	_	GG	_	_	_	_	AA	_	GG	_	CC	CC
10._RUQ_195	_	_	_	AG	_	_	_	_	AA	_	GG	_	CC	CC
11._RUQ_195	_	_	_	_	_	CC	_	_	AA	_	GG	_	CC	CC
12._GC-01-094-5-11	TT	GG	GG	GG	TT	CC	_	CC	AA	GG	GG	GG	CC	CC
13._GC-01-094-5-11	TT	GG	GG	GG	TT	CC	_	CC	AA	GG	GG	GG	CC	CC
14._GC-01-094-5-11	TT	GG	GG	GG	TT	CC	_	CC	AA	GG	GG	GG	CC	CC
15._GC-01-094-5-11	TT	GG	GG	GG	TT	CC	_	CC	AA	GG	GG	GG	CC	CC
16._GC-01-094-5-11	TT	GG	GG	GG	TT	CC	_	CC	AA	GG	GG	GG	CC	CC
17._GC-01-094-5-11	TT	GG	GG	GG	TT	CC	_	CC	AA	GG	GG	GG	CC	CC
18._GC-01-094-5-11	TT	GG	GG	GG	TT	CC	_	CC	AA	GG	GG	GG	CC	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	GG	GG	GG	AA	CC	AA	AA	AC	AA	AA	AA	CC	GG
1._RUQ_195	GG	GG	GG	GG	AA	CC	AA	AA	AC	AA	AA	AA	CC	GG
2._GC-01-94-5-11	GG	GG	GG	GG	AA	CC	AA	AA	AC	AA	AA	AA	CC	GG
3._GU_171_/C	_	_	CC	_	_	GG	_	_	_	_	_	_	_	_
4._GU_171_/C	_	_	CC	_	_	GG	_	_	_	_	_	_	_	_
5._GU_171_/C	_	_	CC	_	_	GG	_	_	_	_	_	_	_	_
6._GU_171_/C	_	_	CC	_	_	GG	_	_	_	_	_	_	_	_
7._GU_171_/C	_	_	CC	_	_	GG	_	_	_	_	_	_	_	_
8._GU_171_/C	_	_	CC	_	_	GG	_	_	_	_	_	_	_	_
9._GU_171_/C	_	_	CC	_	_	GG	_	_	_	_	_	_	_	_
10._RUQ_195	_	_	CC	_	_	GG	_	_	_	_	_	_	_	_
11._RUQ_195	_	CC	CC	_	_	GG	AA	TT	_	_	TT	AA	_	_
12._GC-01-094-5-11	CC	CC	CC	AA	AA	GG	AA	TT	GT	TT	TT	AA	GG	_
13._GC-01-094-5-11	CC	CC	CC	AA	AA	GG	AA	TT	GT	TT	TT	AA	GG	_
14._GC-01-094-5-11	CC	CC	CC	AA	AA	GG	AA	TT	GT	TT	TT	AA	GG	_
15._GC-01-094-5-11	CC	CC	CC	AA	AA	GG	AA	TT	GT	TT	TT	AA	GG	_
16._GC-01-094-5-11	CC	CC	CC	AA	AA	GG	AA	TT	GT	TT	TT	AA	GG	_
17._GC-01-094-5-11	CC	CC	CC	AA	AA	GG	AA	TT	GT	TT	TT	AA	GG	_
18._GC-01-094-5-11	CC	CC	CC	AA	AA	GG	AA	TT	GT	TT	TT	AA	GG	_

	71	72	73	74	75	76	77	78	79	80	81
_Input profile	CC	GG	GG	GG	CC	GG	GG	GG	AA	AA	AA	X_X	X_X	X_X
1._RUQ_195	CC	GG	GG	GG	CC	GG	GG	GG	AA	AA	AA	X_X	X_X	X_X
2._GC-01-94-5-11	CC	GG	GG	GG	CC	GG	GG	GG	AA	AA	AA	X_X	X_X	X_X
3._GU_171_/C	GG	CC	_	_	_	CC	GG	_	AA	TT	AA	X_X	X_X	X_X
4._GU_171_/C	GG	CC	_	_	_	CC	GG	_	AA	TT	AA	X_X	X_X	X_X
5._GU_171_/C	GG	CC	_	_	_	CC	GG	_	AA	TT	AA	X_X	X_X	X_X
6._GU_171_/C	GG	CC	_	_	_	CC	GG	_	AA	TT	AA	X_X	X_X	X_X
7._GU_171_/C	GG	CC	_	_	_	CC	GG	_	AA	TT	AA	X_X	X_X	X_X
8._GU_171_/C	GG	CC	_	_	_	CC	GG	_	AA	TT	AA	X_X	X_X	X_X
9._GU_171_/C	GG	CC	_	_	_	CC	GG	_	AA	TT	AA	X_X	X_X	X_X
10._RUQ_195	GG	CC	_	_	_	CC	GG	_	AA	TT	AA	X_X	X_X	X_X
11._RUQ_195	GG	CC	_	GG	CC	_	_	_	_	_	AA	X_X	X_X	X_X
12._GC-01-094-5-11	GG	CC	CC	GG	CC	CC	GG	CC	AA	TT	AA	X_X	X_X	X_X
13._GC-01-094-5-11	GG	CC	CC	GG	CC	CC	GG	CC	AA	TT	AA	X_X	X_X	X_X
14._GC-01-094-5-11	GG	CC	CC	GG	CC	CC	GG	CC	AA	TT	AA	X_X	X_X	X_X
15._GC-01-094-5-11	GG	CC	CC	GG	CC	CC	GG	CC	AA	TT	AA	X_X	X_X	X_X
16._GC-01-094-5-11	GG	CC	CC	GG	_	CC	GG	CC	AA	TT	AA	X_X	X_X	X_X
17._GC-01-094-5-11	GG	CC	CC	GG	CC	CC	GG	CC	AA	TT	AA	X_X	X_X	X_X
18._GC-01-094-5-11	GG	CC	CC	GG	CC	CC	GG	CC	AA	TT	AA	X_X	X_X	X_X

Input profile: GU_171_/C GC-01-94-5-11

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 11, Tree: 1 > FP1

Notes: Brazil_Selections_Poss_grandparent

1._GU_171_/C RUQ_195

identical
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

2._GU_171_/C GC-01-94-5-11

identical
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 11, Tree: 7

Notes: MCCS_Structure_refs_above_0.9membership

3._GU_171_/C

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1511 10 > F

Dapeng Zhang, 2016

4._GU_171_/C

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 1 > FP

Dapeng Zhang, 2016

5._GU_171_/C

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 14

Dapeng Zhang, 2016

6._GU_171_/C

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 12

Dapeng Zhang, 2016

7._GU_171_/C

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 9

Dapeng Zhang, 2016

8._GU_171_/C

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 2 > FP

Dapeng Zhang, 2016

9._GU_171_/C

47.1 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 7

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._GU_171_/C RUQ_195

45.7 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

11._GU_171_/C RUQ_195

45.9 %
37 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

12._GU_171_/C GC-01-094-5-11

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

13._GU_171_/C GC-01-094-5-11

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

14._GU_171_/C GC-01-094-5-11

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

15._GU_171_/C GC-01-094-5-11

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

16._GU_171_/C GC-01-094-5-11

46.8 %
77 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

17._GU_171_/C GC-01-094-5-11

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

18._GU_171_/C GC-01-094-5-11

47.4 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP316	39	TcSNP32	40	TcSNP329
41	TcSNP364	42	TcSNP372	43	TcSNP413	44	TcSNP418	45	TcSNP42
46	TcSNP429	47	TcSNP430	48	TcSNP448	49	TcSNP497	50	TcSNP521
51	TcSNP529	52	TcSNP547	53	TcSNP560	54	TcSNP561	55	TcSNP577
56	TcSNP591	57	TcSNP60	58	TcSNP602	59	TcSNP619	60	TcSNP653
61	TcSNP689	62	TcSNP723	63	TcSNP731	64	TcSNP75	65	TcSNP751
66	TcSNP776	67	TcSNP799	68	TcSNP823	69	TcSNP836	70	TcSNP860
71	TcSNP872	72	TcSNP891	73	TcSNP894	74	TcSNP899	75	TcSNP90
76	TcSNP917	77	TcSNP929	78	TcSNP944	79	TcSNP953	80	TcSNP994
81	TcSNP998