SNP Profiles of GU 241 /P   View Data

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 Key

 1234567891011121314
_Input profile
CCACAGCCAAGGGGCCAAGGGGAAGGAA
1._MITC-000612
CCACAGCCAAGGGGCCAAGGGGAAGGAA
2._GU_241_/P
_____CCGG_AA_____
3._GU_241_/P
_____CCGG_AA_____
4._GU_241_/P
_____CCGG_AA_____
5._GU_241_/P
_____CCGG_AA_____
6._GU_241_/P
_____CCGG_AA_____
7._GU_241_/P
_____CCGG_AA_____
8._RUQ_1431
_____CCGG_AA_____
9._RUQ_1431
_____CC_GG__GG___
 1516171819202122232425262728
_Input profile
AAAAAAAACCGGAAGGAAGGCGAGAAAA
1._MITC-000612
AAAAAAAACCGGAAGGAAGGCGAGAAAA
2._GU_241_/P
_TTTT___TT_AACCCGAGTTTT
3._GU_241_/P
_TTTT_CC_TT_AACCCGAGTTTT
4._GU_241_/P
_TTTT___TT_AACCCGAGTTTT
5._GU_241_/P
_TTTT___TT_AACCCGAGTTTT
6._GU_241_/P
_TTTT___TT_AACCCGAGTTTT
7._GU_241_/P
_TTTT___TT_AACCCGAGTTTT
8._RUQ_1431
_TTTT_CC_TT_AACCCGAGGTTT
9._RUQ_1431
_TT_TT___CCAACCCGAGTTTT
 2930313233343536373839404142
_Input profile
GGTTGGAAGGGGGGGGGGCCTTATAGGG
1._MITC-000612
GGTTGGAAGGGGGGGGGGCCTTATAGGG
2._GU_241_/P
___AACCGG_CCGG__AT__
3._GU_241_/P
CC__AA_GG_CCGG__AT__
4._GU_241_/P
CC__AACCGG_CCGG__AT__
5._GU_241_/P
CC__AACCGG_CCGG__AT__
6._GU_241_/P
CC__AACCGG_CCGG__AT__
7._GU_241_/P
CC__AACCGG_CCGG__AT__
8._RUQ_1431
CC__AACCGG_CCGG__AT__
9._RUQ_1431
__GGAACCGG_CC____AGGG
 4344454647484950515253545556
_Input profile
AAAAGGGGGGTTGGAACCAAGGCCGGCC
1._MITC-000612
AAAAGGGGGGTTGGAACCAAGGCCGGCC
2._GU_241_/P
AA___GG____AA_GG_CC
3._GU_241_/P
AA___AG____AA_GG_CC
4._GU_241_/P
AA___GG____AA_GG_CC
5._GU_241_/P
AA___GG____AA_GG_CC
6._GU_241_/P
AA___GG____AA_GG_CC
7._GU_241_/P
AA___GG____AA_GG_CC
8._RUQ_1431
AA___GG____AA_GG_CC
9._RUQ_1431
AA_____CC__AA_GG_CC
 5758596061626364656667686970
_Input profile
ACGGGGGGAGAACCAAAAACAAAAAACC
1._MITC-000612
ACGGGGGGAGAACCAAAAACAAAAAACC
2._GU_241_/P
AC__CC__GG_______
3._GU_241_/P
AC__CC__GG_______
4._GU_241_/P
AC__CC__GG_______
5._GU_241_/P
AC__CC__GG_______
6._GU_241_/P
AC__CC__GG_______
7._GU_241_/P
AC__CC__GG_______
8._RUQ_1431
AC__CC__GG_______
9._RUQ_1431
AC_CCCC__GGAATT__TTAA_
 717273747576777879808182  
_Input profile
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X
1._MITC-000612
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X
2._GU_241_/P
_GGCC___CCGG_AACTAAX_XX_X
3._GU_241_/P
_GGCC___CCGG_AACTAAX_XX_X
4._GU_241_/P
_GGCC___CCGG_AACTAAX_XX_X
5._GU_241_/P
_GGCC___CCGG_AACTAAX_XX_X
6._GU_241_/P
_GGCC___CCGG_AACTAAX_XX_X
7._GU_241_/P
_GGCC___CCGG_AACTAAX_XX_X
8._RUQ_1431
_GGCC___CCGG_AACTAAX_XX_X
9._RUQ_1431
_GGCC_GGCC_____AAX_XX_X

Input profile: GU_241_/P RUQ_1431

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._GU_241_/P MITC-000612

identical
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

2._GU_241_/P

51.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8838 9
 Dapeng Zhang, 2016

3._GU_241_/P

51.5 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y33
 Dapeng Zhang, 2016

4._GU_241_/P

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8838 10
 Dapeng Zhang, 2016

5._GU_241_/P

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8838 3
 Dapeng Zhang, 2016

6._GU_241_/P

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8838 2
 Dapeng Zhang, 2016

7._GU_241_/P

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8838 1
 Dapeng Zhang, 2016

8._GU_241_/P RUQ_1431

51.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._GU_241_/P RUQ_1431

48.6 %
37 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

 Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998