SNP Profiles of GU 147 /H   View Data

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 1234567891011121314
_Input profile
CCAAAACCAAGGGGCCAAGGGGAAGGAA
1._GC-01-80-4-16
CCAAGGCCAAGGGGCCAAGGGGAAGGAA
2._GU_147_/H
_____CCGG_AA_____
3._GU_147_/H
_____CCGG_AA_____
4._GU_147_/H
_____CCGG_AA_____
5._GU_147_/H
_____CCGG_AA_____
6._GU_147_/H
_____CCGG_AA_____
7._GU_147_/H
_____CCGG_AA_____
8._GU_147_/H
_____CCGG_AA_____
9._GU_147_/H
_____CCGG_AA_____
10._GU_147_/H
_____CCGG_AA_____
11._RUQ_222
_____CCGG_AA_____
12._RUQ_222
_____CC_GG__GG___
13._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
14._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
15._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
16._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
17._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
18._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
19._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
20._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
21._GC-01-080-4-16
CCAAGGCCTTCCGGGGAACCGGTTCCTT
 1516171819202122232425262728
_Input profile
AAAAAAAACCGGAAGGAAGGCCAGAAAA
1._GC-01-80-4-16
AAAAAAAA_GGAAGGAAGGGGGGAAAA
2._GU_147_/H
_TTTT___TT_AACCCCGGTTTT
3._GU_147_/H
_TTTT___TT_AACCCCGGTTTT
4._GU_147_/H
_TTTT___TT_AACCCCGGTTTT
5._GU_147_/H
_TTTT___TT__CCCCGGTTTT
6._GU_147_/H
_TTTT___TT_AACCCCGGTTTT
7._GU_147_/H
_TTTT___TT_AACCCCGGTTTT
8._GU_147_/H
_TTTT___TT_AACCCCGGTTTT
9._GU_147_/H
_TTTT___TT_AACCCCGGTTTT
10._GU_147_/H
_TTTT___TT_AACCCCGGTTTT
11._RUQ_222
_TTTT_CC_TT_AACCCCGGTTTT
12._RUQ_222
_TT_TT___CCAACCCCGGTTTT
13._GC-01-080-4-16
TTTTTTTT_GGTTCCAACCCCGGTTTT
14._GC-01-080-4-16
TTTTTTTT_GGTTCC_CCCCGGTTTT
15._GC-01-080-4-16
TTTTTTTT_GGTTCCAACCCCGGTTTT
16._GC-01-080-4-16
TTTTTTTT_GGTTCCAACCCCGGTTTT
17._GC-01-080-4-16
TTTTTTTT_GGTTCCAACCCCGGTTTT
18._GC-01-080-4-16
TTTTTTTT_GGTTCCAACCCCGGTTTT
19._GC-01-080-4-16
TTTTTTTT_GGTTCCAACCCCGGTTTT
20._GC-01-080-4-16
TTTTTTTT_GGTTCCAACCCCGGTTTT
21._GC-01-080-4-16
TTTTTTTT_GGTTCCAACCCCGGTTTT
 2930313233343536373839404142
_Input profile
GGTTGGAAGGGGGGGGGGCCTTATGGGG
1._GC-01-80-4-16
GGTTGGAAGGGGGGGGGG_TTATGGGG
2._GU_147_/H
CC__AACCGG_CCGG__AT__
3._GU_147_/H
CC__AACCGG_CCGG__AT__
4._GU_147_/H
CC__AACCGG_CCGG__AT__
5._GU_147_/H
CC__AACCGG_CCGG__AT__
6._GU_147_/H
CC__AACCGG_CCGG__AT__
7._GU_147_/H
CC__AACCGG_CCGG__AT__
8._GU_147_/H
CC__AACCGG_CCGG__AT__
9._GU_147_/H
CC__AACCGG_CCGG__AT__
10._GU_147_/H
CC__AACCGG_CCGG__AT__
11._RUQ_222
CC__AACCGG_CCGG__AT__
12._RUQ_222
__GGAACCGG_CC____GGGG
13._GC-01-080-4-16
CCAAGGAACCGGGGCCGGGGAAATGGGG
14._GC-01-080-4-16
CCAAGGAACCGGGGCCGGGGAAATGGGG
15._GC-01-080-4-16
CCAAGGAACCGGGGCCGGGGAAATGGGG
16._GC-01-080-4-16
CCAAGGAACCGGGGCCGGGGAAATGGGG
17._GC-01-080-4-16
CCAAGGAACCGGGGCCGGGGAAATGGGG
18._GC-01-080-4-16
CCAAGGAACCGGGGCCGGGGAAATGGGG
19._GC-01-080-4-16
CCAAGGAACCGGGGCCGGGGAAATGGGG
20._GC-01-080-4-16
CCAAGGAACCGGGGCCGGGGAAATGGGG
21._GC-01-080-4-16
CCAAGGAACCGGGGCCGGGGAAATGGGG
 4344454647484950515253545556
_Input profile
AAAAGGGGGGTTGGAACCAAGGCCGGCC
1._GC-01-80-4-16
AAAGGGGGGGTTGGAACCAAGGCCGGCC
2._GU_147_/H
AA___GG____AA_GG_CC
3._GU_147_/H
AA___GG____AA_GG_CC
4._GU_147_/H
AA___GG____AA_GG_CC
5._GU_147_/H
AA___GG____AA_GG_CC
6._GU_147_/H
AA___GG____AA_GG_CC
7._GU_147_/H
AA___GG____AA_GG_CC
8._GU_147_/H
AA___GG____AA_GG_CC
9._GU_147_/H
AA___GG____AA_GG_CC
10._GU_147_/H
AA___GG____AA_GG_CC
11._RUQ_222
AA___GG____AA_GG_CC
12._RUQ_222
AA_____CC__AA_GG_CC
13._GC-01-080-4-16
AACTGGGGGGTTCC_CCAAGGGGGGCC
14._GC-01-080-4-16
AACTGGGGGGTTCC_CCAAGGGGGGCC
15._GC-01-080-4-16
AACTGGGGGGTTCC_CCAAGGGGGGCC
16._GC-01-080-4-16
AACTGGGGGGTTCC_CCAAGGGGGGCC
17._GC-01-080-4-16
AACTGGGGGGTTCC_CCAAGGGGGGCC
18._GC-01-080-4-16
AACTGGGGGGTTCC_CCAAGGGGGGCC
19._GC-01-080-4-16
AACTGGGGGGTTCC_CCAAGGGGGGCC
20._GC-01-080-4-16
AACTGGGGGGTTCC_CCAAGGGGGGCC
21._GC-01-080-4-16
AACTGGGGGGTTCC_CCAAGGGGGGCC
 5758596061626364656667686970
_Input profile
CCGGGGGGAGAACCAAAAACAAAAAACC
1._GC-01-80-4-16
AAGGGGAGGGAACCAAAACCAAAAAACC
2._GU_147_/H
AA__CT__GG_______
3._GU_147_/H
AA__CT__GG_______
4._GU_147_/H
AA__CT__GG_______
5._GU_147_/H
AA__CT__GG_______
6._GU_147_/H
AA__CT__GG_______
7._GU_147_/H
AA__CT__GG_______
8._GU_147_/H
AA__CT__GG_______
9._GU_147_/H
AA__CT__GG_______
10._GU_147_/H
AA__CT__GG_______
11._RUQ_222
AA__CT__GG_______
12._RUQ_222
AA_CCCT__GGAATT__TTAA_
13._GC-01-080-4-16
AACCCCCTAAAAGGAATTGGTTTTAAGG
14._GC-01-080-4-16
AACCCCCTAAAAGGAATTGGTTTTAAGG
15._GC-01-080-4-16
AACCCCCTAAAAGGAATTGGTTTTAAGG
16._GC-01-080-4-16
AACCCCCTAAAAGGAATTGGTTTTAAGG
17._GC-01-080-4-16
AACCCCCTAAAAGGAATTGGTTTTAAGG
18._GC-01-080-4-16
AACCCCCTAAAAGGAATTGGTTTTAAGG
19._GC-01-080-4-16
AACCCCCTAAAAGGAATTGGTTTTAAGG
20._GC-01-080-4-16
AACCCCCTAAAAGGAATTGGTTTTAAGG
21._GC-01-080-4-16
AACCCCCTAAAAGGAATTGGTTTTAAGG
 717273747576777879808182  
_Input profile
GGCCGGGGGGCCGGGGGGAAAGAGX_XX_X
1._GC-01-80-4-16
GGCCGGGGGGCCGGGGGGAAGGGGX_XX_X
2._GU_147_/H
_GGCC___CCGG_AACCGGX_XX_X
3._GU_147_/H
_GGCC___CCGG_AACCGGX_XX_X
4._GU_147_/H
_GGCC___CCGG_AACCGGX_XX_X
5._GU_147_/H
_GGCC___CCGG_AACCGGX_XX_X
6._GU_147_/H
_GGCC___CCGG_AACCGGX_XX_X
7._GU_147_/H
_GGCC___CCGG_AACCGGX_XX_X
8._GU_147_/H
_GGCC___CCGG_AACCGGX_XX_X
9._GU_147_/H
_GGCC___CCGG_AACCGGX_XX_X
10._GU_147_/H
_GGCC___CCGG_AACCGGX_XX_X
11._RUQ_222
_GGCC___CCGG_AACCGGX_XX_X
12._RUQ_222
_GGCC_-CC_____GGX_XX_X
13._GC-01-080-4-16
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
14._GC-01-080-4-16
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
15._GC-01-080-4-16
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
16._GC-01-080-4-16
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
17._GC-01-080-4-16
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
18._GC-01-080-4-16
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
19._GC-01-080-4-16
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
20._GC-01-080-4-16
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
21._GC-01-080-4-16
_GGCCCCGGCCCCGGCCAACCGGX_XX_X

Input profile: GU_147_/H RUQ_222

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._GU_147_/H GC-01-80-4-16

88.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 16, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._GU_147_/H

41.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

3._GU_147_/H

41.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 5 > FP
 Dapeng Zhang, 2016

4._GU_147_/H

41.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 14 > F
 Dapeng Zhang, 2016

5._GU_147_/H

39.4 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 1 > FP
 Dapeng Zhang, 2016

6._GU_147_/H

41.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 16
 Dapeng Zhang, 2016

7._GU_147_/H

41.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 13
 Dapeng Zhang, 2016

8._GU_147_/H

41.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 12
 Dapeng Zhang, 2016

9._GU_147_/H

41.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 7
 Dapeng Zhang, 2016

10._GU_147_/H

41.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 15 > F
 Dapeng Zhang, 2016

11._GU_147_/H RUQ_222

42.9 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._GU_147_/H RUQ_222

37.8 %
37 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._GU_147_/H GC-01-080-4-16

43 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

14._GU_147_/H GC-01-080-4-16

42.3 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._GU_147_/H GC-01-080-4-16

43 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._GU_147_/H GC-01-080-4-16

43 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

17._GU_147_/H GC-01-080-4-16

43 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._GU_147_/H GC-01-080-4-16

43 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

19._GU_147_/H GC-01-080-4-16

43 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

20._GU_147_/H GC-01-080-4-16

43 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

21._GU_147_/H GC-01-080-4-16

43 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

 

 Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998