SNP Profiles of CRU 156   View Data

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 Key

 1234567891011121314
_Input profile
CCACAGCCAAGGGGCCAAGGGGAAGGAA
1._RUQ_880
_____CCGG_AA_____
2._CRU_156
_____CTGG_AA_____
3._RUQ_880
_____CC_GG__GG___
4._CRU_156
_____CTAG_AA_____
5._CRU_156
_____CTAG_AA_____
6._CRU_156
_____CTAG_AA_____
7._CRU_156
_____CTAG_AA_____
8._CRU_156
_____CTAG_AA_____
9._GC-01-131-7-08
CCCCAACCCTCTAGGTAACCAGTTTTGG
10._GC-01-131-7-08
CCCCAACCCTCTAGGTAACCAGTTTTGG
11._GC-01-131-7-08
CCCCAACCCTCTAGGTAACCAGTTTTGG
12._GC-01-131-7-08
CCCCAACCCTCTAGGTAACCAGTTTTGG
13._GC-01-131-7-08
CCCCAACCCTCTAGGTAACCAGTTTTGG
 1516171819202122232425262728
_Input profile
AAAAAAAACCGGAAGGAAGGCCGGAAAA
1._RUQ_880
_TTTT_CC_TT_AACCGGGGGTTT
2._CRU_156
_GTCT_AA_CT_ACCTCGGGGTCT
3._RUQ_880
_TT_TT___CCAACCGGGGTTTT
4._CRU_156
_GTCC_AA_TT_AACTCGAAGTCT
5._CRU_156
_GTCC_AA_TT_AACTCGAAGTCT
6._CRU_156
_GTCC_AA_TT_AACTCGAAGTCT
7._CRU_156
_GTCC_AA_TT_AACTCGAAGTCT
8._CRU_156
_GTCC_AA_TT_AACTCGAAGTCT
9._GC-01-131-7-08
CCGTCCTTAAGGTTCCAACTCGAAGTCT
10._GC-01-131-7-08
CCGTCCTTAAGGTTCCAACTCGAAGTCT
11._GC-01-131-7-08
CCGTCCTTAAGGTTCCAACTCGAAGTCT
12._GC-01-131-7-08
CCGTCCTTAAGGTTCCAACTCGAAGTCT
13._GC-01-131-7-08
CCGTCCTTAAGGTTCCAACTCGAAGTCT
 2930313233343536373839404142
_Input profile
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
1._RUQ_880
CC__AACCGG_CCGG__TT__
2._CRU_156
CC__CCGGAA_CTGG__TT__
3._RUQ_880
__GGAACCGG_CC____GGGG
4._CRU_156
CC__ACGGAG_CTGG__AT__
5._CRU_156
CC__ACGGAG_CTGG__AT__
6._CRU_156
CC__ACGGAG_CTGG__AT__
7._CRU_156
CC__ACGGAG_CTGG__AT__
8._CRU_156
CC__ACGGAG_CTGG__AT__
9._GC-01-131-7-08
CCTTGGACGGAGGGCTGGGGAAATAGAG
10._GC-01-131-7-08
CCTTGGACGGAGGGCTGGGGAAATAGAG
11._GC-01-131-7-08
CCTTGGACGGAGGGCTGGGGAAATAGAG
12._GC-01-131-7-08
CCTTGGACGGAGGGCTGGGGAAATAGAG
13._GC-01-131-7-08
CCTTGGACGGAGGGCTGGGGAAATAGAG
 4344454647484950515253545556
_Input profile
AAAAGGGGGGTTGGAACCAAGGCCAGCC
1._RUQ_880
AA___GG____AA_GG_CC
2._CRU_156
AA___GG____AC_GG_GG
3._RUQ_880
AA_____CC__AA_GG_CC
4._CRU_156
AT___GG____CC_GT_CC
5._CRU_156
AT___GG____CC_GT_CC
6._CRU_156
AT___GG____CC_GT_CC
7._CRU_156
AT___GG____CC_GT_CC
8._CRU_156
AT___GG____CC_GT_CC
9._GC-01-131-7-08
ATCTAGGGGGAACG_CCCCGGGTGGCC
10._GC-01-131-7-08
ATCTAGGGGGAACG_CCCCGGGTGGCC
11._GC-01-131-7-08
ATCTAGGGGGAACG_CCCCGGGTGGCC
12._GC-01-131-7-08
ATCTAGGGGGAACG_CCCCGGGTGGCC
13._GC-01-131-7-08
ATCTAGGGGGAACG_CCCCGGGTGGCC
 5758596061626364656667686970
_Input profile
CCGGGGGGAAAACCAAAACCAAAAAACC
1._RUQ_880
CC__CC__GG_______
2._CRU_156
AC_____GG_______
3._RUQ_880
CC_CCCC__GGAATT__TTAA_
4._CRU_156
AC__CT__GG_______
5._CRU_156
AC__CT__GG_______
6._CRU_156
AC__CT__GG_______
7._CRU_156
AC__CT__GG_______
8._CRU_156
AC__CT__GG_______
9._GC-01-131-7-08
ACCCCCCTAGAGGGGGCTTTGTGTACGG
10._GC-01-131-7-08
ACCCCCCTAGAGGGGGCTTTGTGTACGG
11._GC-01-131-7-08
ACCCCCCTAGAGGGGGCTTTGTGTACGG
12._GC-01-131-7-08
ACCCCCCTAGAGGGGGCTTTGTGTACGG
13._GC-01-131-7-08
ACCCCCCTAGAGGGGGCTTTGTGTACGG
 717273747576777879808182  
_Input profile
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
1._RUQ_880
_GGCC___CCGG_AACCAGX_XX_X
2._CRU_156
_CCCT___CTGG_AACTAAX_XX_X
3._RUQ_880
_GGCC_-CC_____AAX_XX_X
4._CRU_156
_CCCC___TTGG_AACTAAX_XX_X
5._CRU_156
_CCCC___TTGG_AACTAAX_XX_X
6._CRU_156
_CCCC___TTGG_AACTAAX_XX_X
7._CRU_156
_CCCC___TTGG_AACTAAX_XX_X
8._CRU_156
_CCCC___TTGG_AACTAAX_XX_X
9._GC-01-131-7-08
_CCCCCCGGCCTTGGCTAACTAAX_XX_X
10._GC-01-131-7-08
_CCCCCCGGCCTTGGCTAACTAAX_XX_X
11._GC-01-131-7-08
_CCCCCCGGCCTTGGCTAACTAAX_XX_X
12._GC-01-131-7-08
_CCCCCCGGCCTTGGCTAACTAAX_XX_X
13._GC-01-131-7-08
_CCCCCCGGCCTTGGCTAACTAAX_XX_X

Input profile: CRU_156 RUQ_880

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._CRU_156 RUQ_880

47.1 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._CRU_156

41.2 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y1
 Dapeng Zhang, 2016

3._CRU_156 RUQ_880

43.2 %
37 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._CRU_156

38.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 6
 Dapeng Zhang, 2016

5._CRU_156

38.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 5
 Dapeng Zhang, 2016

6._CRU_156

38.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 3
 Dapeng Zhang, 2016

7._CRU_156

38.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 2
 Dapeng Zhang, 2016

8._CRU_156

38.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1708 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

9._CRU_156 GC-01-131-7-08

35.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._CRU_156 GC-01-131-7-08

35.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._CRU_156 GC-01-131-7-08

35.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._CRU_156 GC-01-131-7-08

35.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._CRU_156 GC-01-131-7-08

35.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

 

 Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998