SNP Profiles of GU 133 /C   View Data

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 Key

 1234567891011121314
_Input profile
CCACGGCCAAGGGGCCAAGGGGAAGGAA
1._GC-01-116-6-13
CCACGGCCAAGGGGCCAAGGGGAAGGAA
2._RUQ_190
_____CC____GG___
3._GU_133_/C
_____CCGG_AA_____
4._GU_133_/C
_____CCGG_AA_____
5._RUQ_190
_____CCGG_AA_____
6._GU_133_/C
_____CCGG_AA_____
7._GU_133_/C
_____CCGG_AA_____
8._GU_133_/C
_____CCGG_AA_____
9._GU_133_/C
_____CCGG_AA_____
10._GU_133_/C
_____CCGG_AA_____
11._GU_133_/C
_____CCGG_AA_____
12._GU_133_/C
_____CCGG_AA_____
13._GU_133_/C
_____CCGG_AA_____
14._GU_133_/C
_____CCGG_AA_____
15._RUQ_190
_____CC_GG__GG___
16._GC-01-116-6-13
CCACGGCCTTCCGGGGAACCGGTTCCTT
17._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
18._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
19._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
20._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
21._GC-01-116-6-13
CCACGGCCTTCCGGGGAACCGGTTCCTT
22._GC-01-116-6-13
CCACGGCCTTCCGGGGAACCGGTTCCTT
23._GC-01-116-6-13
CCACGGCCTTCCGGGGAACCGGTTCCTT
24._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
25._GC-01-116-6-13
CCACGGCCTTCCGGGGAACCGGTTCCTT
26._GC-08-164-4-07
CCACGGCCTTCCGGGGAACCGGTTCCTT
 1516171819202122232425262728
_Input profile
AAAAAAAACCGGAAGGAAGGCGGGAAAA
1._GC-01-116-6-13
AAAAAAAA_GGAAGGAAGGCGGGAAAA
2._RUQ_190
_______CCAA_CG__TT
3._GU_133_/C
__TT_____AACCCGGGTTTT
4._GU_133_/C
__TT___TT_AACCCGGGTTTT
5._RUQ_190
_TTTT_CC_TT_AACCCGGGGTTT
6._GU_133_/C
_TTTT___TT_AACCCGGGTTTT
7._GU_133_/C
_TTTT___TT_AACCCGGGTTTT
8._GU_133_/C
_TTTT___TT_AACCCGGGTTTT
9._GU_133_/C
_TTTT___TT_AACCCGGGTTTT
10._GU_133_/C
_TTTT___TT_AACCCGGGTTTT
11._GU_133_/C
_TTTT___TT_AACCCGGGTTTT
12._GU_133_/C
_TTTT___TT_AACCCGGGTTTT
13._GU_133_/C
_TTTT___TT_AACCCGGGTTTT
14._GU_133_/C
_TTTT___TT_AACCCGGGTTTT
15._RUQ_190
_TT_TT___CCAACCCGGGTTTT
16._GC-01-116-6-13
TT_TTTT___CCAACCCGGGTTTT
17._GC-08-164-4-07
TT_TTTT_GGTTCCAACCCGGGTTTT
18._GC-08-164-4-07
TTTTTTTT_GGTTCCAACCCGGGTTTT
19._GC-08-164-4-07
TTTTTTTT_GGTTCCAACCCGGGTTTT
20._GC-08-164-4-07
TTTTTTTT_GGTTCCAACCCGGGTTTT
21._GC-01-116-6-13
TTTTTTTT_GGTTCCAACCCGGGTTTT
22._GC-01-116-6-13
TTTTTTTT_GGTTCCAACCCGGGTTTT
23._GC-01-116-6-13
TTTTTTTT_GGTTCCAACCCGGGTTTT
24._GC-08-164-4-07
TTTTTTTT_GGTTCCAACCCGGGTTTT
25._GC-01-116-6-13
TTTTTTTT_GGTTCCAACCCGGGTTTT
26._GC-08-164-4-07
TTTTTTTT_GGTTCCAACCCGGGTTTT
 2930313233343536373839404142
_Input profile
GGTTGGAAGGGGGGGGGGCCTTATGGGG
1._GC-01-116-6-13
GGTTGGAAGGGGGGGGGG_TTATGGGG
2._RUQ_190
__GGAAGGGG_______GG
3._GU_133_/C
CC__AACC__CCGG__AT__
4._GU_133_/C
CC__AACCGG_CCGG__AT__
5._RUQ_190
CC__AACCGG_CCGG__AT__
6._GU_133_/C
CC__AACCGG_CCGG__AT__
7._GU_133_/C
CC__AACCGG_CCGG__AT__
8._GU_133_/C
CC___CCGG_CCGG__AT__
9._GU_133_/C
CC__AACCGG_CCGG__AT__
10._GU_133_/C
CC__AACCGG_CCGG__AT__
11._GU_133_/C
CC__AACC__CCGG__AT__
12._GU_133_/C
CC__AACCGG_CCGG__AT__
13._GU_133_/C
CC__AACCGG_CCGG__AT__
14._GU_133_/C
CC__AACCGG_CCGG__AT__
15._RUQ_190
__GGAACCGG_CC____GGGG
16._GC-01-116-6-13
CCAAGGAACC_GGCCGG_AAATGGGG
17._GC-08-164-4-07
CCAAGGAACCGGGGCCGGGGAAATGGGG
18._GC-08-164-4-07
CCAAGGAACCGGGGCCGGGGAAATGGGG
19._GC-08-164-4-07
CCAAGGAACCGGGGCCGGGGAAATGGGG
20._GC-08-164-4-07
CCAAGG_CCGGGGCCGGGGAAATGGGG
21._GC-01-116-6-13
CCAAGGAACC_GGCCGGGGAAATGGGG
22._GC-01-116-6-13
CCAAGGAACCGGGGCCGGGGAAATGGGG
23._GC-01-116-6-13
CCAAGGAACCGGGGCCGGGGAAATGGGG
24._GC-08-164-4-07
CCAAGGAACCGGGGCCGGGGAAATGGGG
25._GC-01-116-6-13
CCAAGGAACCGGGGCCGGGGAAATGGGG
26._GC-08-164-4-07
CCAAGGAACCGGGGCCGGGGAAATGGGG
 4344454647484950515253545556
_Input profile
AAAAGGGGGGTTGGAACCAAGGCCGGCC
1._GC-01-116-6-13
AAAAGGGGGGTTGGAACCAAGGCCGGCC
2._RUQ_190
AATT____CC______CC
3._GU_133_/C
AA___GG____AA_GG_CC
4._GU_133_/C
AA___GG____AA_GG_CC
5._RUQ_190
AA___GG____AA_GG_CC
6._GU_133_/C
AA___GG____AA_GG_CC
7._GU_133_/C
AA___GG____AA_GG_CC
8._GU_133_/C
AA___GG____AA_GG_CC
9._GU_133_/C
AA___GG____AA_GG_CC
10._GU_133_/C
AA___GG____AA_GG_CC
11._GU_133_/C
AA___GG____AA_GG_CC
12._GU_133_/C
AA___GG____AA_GG_CC
13._GU_133_/C
AA___GG____AA_GG_CC
14._GU_133_/C
AA___GG____AA_GG_CC
15._RUQ_190
AA_____CC__AA_GG_CC
16._GC-01-116-6-13
AA_GGGGGGTTCC_CCAAGGGGGGCC
17._GC-08-164-4-07
AATTGGGGGGTTCC_CCAAGGGGGGCC
18._GC-08-164-4-07
AATTGGGGGGTTCC_CCAAGGGGGGCC
19._GC-08-164-4-07
AATTGGGGGGTTCC_CCAAGGGGGGCC
20._GC-08-164-4-07
AATTGGGGGGTTCC_CCAAGGGGGGCC
21._GC-01-116-6-13
AATTGGGGGGTTCC_CCAAGGGGGGCC
22._GC-01-116-6-13
AATTGGGGGGTTCC_CCAAGGGGGGCC
23._GC-01-116-6-13
AATTGGGGGGTTCC_CCAAGGGGGGCC
24._GC-08-164-4-07
AATTGGGGGGTTCC_CCAAGGGGGGCC
25._GC-01-116-6-13
AATTGGGGGGTTCC_CCAAGGGGGGCC
26._GC-08-164-4-07
AATTGGGGGGTTCC_CCAAGGGGGGCC
 5758596061626364656667686970
_Input profile
ACGGGGGGGGAACCAAAACCAAAAAACC
1._GC-01-116-6-13
ACGGGGGGGGAACCAAAACCAAAAAACC
2._RUQ_190
AC_CC______GG____
3._GU_133_/C
AC__CC__GG_______
4._GU_133_/C
AC__CC__GG_______
5._RUQ_190
AC__CC__GG_______
6._GU_133_/C
AC__CC__GG_______
7._GU_133_/C
AC__CC__GG_______
8._GU_133_/C
AC__CC__GG_______
9._GU_133_/C
AC__CC__GG_______
10._GU_133_/C
AC__CC__GG_______
11._GU_133_/C
AC__CC__GG_______
12._GU_133_/C
AC__CC__GG_______
13._GU_133_/C
AC__CC__GG_______
14._GU_133_/C
AC__CC__GG_______
15._RUQ_190
AC_CCCC__GGAATT__TTAA_
16._GC-01-116-6-13
ACCCCCCCAAAAGGAATT_TTTTAAGG
17._GC-08-164-4-07
ACCCCCCCAAAAGGAATTGGTTTTAAGG
18._GC-08-164-4-07
ACCCCCCCAAAAGGAATTGGTTTTAAGG
19._GC-08-164-4-07
ACCCCCCCAAAAGGAATTGGTTTTAAGG
20._GC-08-164-4-07
ACCCCCCCAAAAGGAATTGGTTTTAAGG
21._GC-01-116-6-13
ACCCCCCCAAAAGGAATTGGTTTTAAGG
22._GC-01-116-6-13
ACCCCCCCAAAAGGAATTGGTTTTAAGG
23._GC-01-116-6-13
ACCCCCCCAAAAGGAATTGGTTTTAAGG
24._GC-08-164-4-07
ACCCCCCCAAAAGGAATTGGTTTTAAGG
25._GC-01-116-6-13
ACCCCCCCAAAAGGAATTGGTTTTAAGG
26._GC-08-164-4-07
ACCCCCCCAAAAGGAATTGGTTTTAAGG
 717273747576777879808182  
_Input profile
GGCCGGGGGGCCGGGGGGAAGGGGX_XX_X
1._GC-01-116-6-13
GGCCGGGGGGCCGGGGGGAAGGGGX_XX_X
2._RUQ_190
GGCCCC_______CC_X_XX_X
3._GU_133_/C
_GG____CCGG_AACCGGX_XX_X
4._GU_133_/C
_GGCC___CCGG_AACCGGX_XX_X
5._RUQ_190
_GGCC___CCGG_AACCGGX_XX_X
6._GU_133_/C
_GGCC___CCGG_AACCGGX_XX_X
7._GU_133_/C
_GGCC___CCGG_AACCGGX_XX_X
8._GU_133_/C
_GGCC___CCGG_AACCGGX_XX_X
9._GU_133_/C
_GGCC___CCGG_AACCGGX_XX_X
10._GU_133_/C
_GGCC___CCGG_AACCGGX_XX_X
11._GU_133_/C
_GGCC___CCGG_AACCGGX_XX_X
12._GU_133_/C
_GGCC___CCGG_AACCGGX_XX_X
13._GU_133_/C
_GGCC___CCGG_AACCGGX_XX_X
14._GU_133_/C
_GGCC___CCGG_AACCGGX_XX_X
15._RUQ_190
_GGCC_-CC_____GGX_XX_X
16._GC-01-116-6-13
AAGG_CCGGCCCCGGCCAACCGGX_XX_X
17._GC-08-164-4-07
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
18._GC-08-164-4-07
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
19._GC-08-164-4-07
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
20._GC-08-164-4-07
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
21._GC-01-116-6-13
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
22._GC-01-116-6-13
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
23._GC-01-116-6-13
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
24._GC-08-164-4-07
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
25._GC-01-116-6-13
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
26._GC-08-164-4-07
_GGCCCCGGCCCCGGCCAACCGGX_XX_X

Input profile: GU_133_/C MITC-000670

 
USDA-SHRS, United States of America
 Mars, 2018

1._GU_133_/C GC-01-116-6-13

identical
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._GU_133_/C RUQ_190

59.1 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

3._GU_133_/C

53.3 %
30 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

4._GU_133_/C

51.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

5._GU_133_/C RUQ_190

51.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

7._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

8._GU_133_/C

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

9._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

10._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

11._GU_133_/C

48.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

12._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

13._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

14._GU_133_/C

50 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

15._GU_133_/C RUQ_190

45.9 %
37 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._GU_133_/C GC-01-116-6-13

50 %
72 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

17._GU_133_/C GC-08-164-4-07

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

18._GU_133_/C GC-08-164-4-07

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._GU_133_/C GC-08-164-4-07

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._GU_133_/C GC-08-164-4-07

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

21._GU_133_/C GC-01-116-6-13

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

22._GU_133_/C GC-01-116-6-13

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

23._GU_133_/C GC-01-116-6-13

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

24._GU_133_/C GC-08-164-4-07

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

25._GU_133_/C GC-01-116-6-13

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

26._GU_133_/C GC-08-164-4-07

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

 

 Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998