SNP Profiles of PA_70   View Data

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 Key

 1234567891011121314
_Input profile
AACCAGACAAGGAGCCAAGGGGAAAGAC
1._GC-04-53-3-17
AACCAGACAAGGAGCCAAGGGGAAAGAC
2._MITC-000026
AACCAGACAAGGAGCCAAGGGGAAAGAC
3._RUQ_33
AACCAGACAAGGAGCCAAGGGGAAAGAC
4._PA_70_[PER]_Fld#_185_Plt#_1
ACACAGACAAGGGGCCAAGGGGAAAGAC
5._RUQ_33
______AG_______
6._PA70[PER]
_____CC____GG___
7._PA_70_[PER]
_____CCAG_AA_____
8._GC-04-053-3-17
AACCAGACTTCCAGGGAACCGGTTCTGT
9._PA_70_[PER]
_____CCAG_AA_____
10._RUQ_33
_____CCAG_AA_____
11._RUQ_33
_____CC_GG__GG___
12._PA_70_[PER]
_____TTAA_AA_____
13._GC-04-053-3-17
CCACGGAACTTTAAGTAACCAATTTTGG
 1516171819202122232425262728
_Input profile
AAAAGGAGACGGAAGGAAAGCCAGCCGG
1._GC-04-53-3-17
AAAAGGAGACGGAAGGAAAGCCAGCCGG
2._MITC-000026
AAAAGGAGACGGAAGGAAAGCCAGCCGG
3._RUQ_33
AAAAGGAGACGGAAGGAAAGCCAGCCGG
4._PA_70_[PER]_Fld#_185_Plt#_1
AAAAAGAGCCGGAAGGAAAGCGAGCCAG
5._RUQ_33
_TT______AA_GG___
6._PA70[PER]
_______CCAA_CC__CC
7._PA_70_[PER]
_TTCC_AC_TT_AACTGGAGGGCC
8._GC-04-053-3-17
TTTTCCTTACGGTTCCAACTGGAGGGCC
9._PA_70_[PER]
_TTCC_AC_TT_AACTGGAGGGCC
10._RUQ_33
_TTCC_AC_TT_AACTGGAGGGCC
11._RUQ_33
_TT_CT___CCAACTGGAGGGCC
12._PA_70_[PER]
_TTCC_AA_TT_AACTGGAAGTCC
13._GC-04-053-3-17
CCTTCCTTAAGGTTTTAACTGGAAGTCC
 2930313233343536373839404142
_Input profile
GGATGGAAGGAGGGGGGGCCTTATGGGG
1._GC-04-53-3-17
GGATGGAAGGAGGGGGGGCCTTATGGGG
2._MITC-000026
GGATGGAAGGAGGGGGGGCCTTATGGGG
3._RUQ_33
GGATGGAAGGAGGGGGGGCCTTATGGGG
4._PA_70_[PER]_Fld#_185_Plt#_1
AGTTGGACGGAGGGGGGGCCTTATGGGG
5._RUQ_33
_____AG______GG_
6._PA70[PER]
__GGAAGGAG_______GG
7._PA_70_[PER]
CC__AA_AG_CCGG__AT__
8._GC-04-053-3-17
CCATGGAACCAGGGCCGGGGAAATGGGG
9._PA_70_[PER]
CC__AACCAG_CCGG__AT__
10._RUQ_33
CC__AACCAG_CCGG__AT__
11._RUQ_33
__GGAACCAG_CC____GGGG
12._PA_70_[PER]
TT__AACGAG_CTGG__AT__
13._GC-04-053-3-17
TTAAAGAACGAGGGCTGGGGATATAGAA
 4344454647484950515253545556
_Input profile
AAAAAGGGGGAAGGGGCCAAAGCCAGCG
1._GC-04-53-3-17
AAAAAGGGGGAAGGGGCCAAAGCCAGCG
2._MITC-000026
AAAAAGGGGGAAGGGGCCAAAGCCAGCG
3._RUQ_33
AAAAAGGGGGAAGG_CCAAAGCCAGCG
4._PA_70_[PER]_Fld#_185_Plt#_1
AAAGAAGGGGAAGGGGCCAAAA_AGGG
5._RUQ_33
_________AA___CG
6._PA70[PER]
AATT____CC______CG
7._PA_70_[PER]
AA___GG____AA_GG_CG
8._GC-04-053-3-17
AATTAGGGGGAACC_CCAAAGGGAGCG
9._PA_70_[PER]
AA___GG____AA_GG_CG
10._RUQ_33
AA___GG____AA_GG_CG
11._RUQ_33
AA_____CC__AA_GG_CG
12._PA_70_[PER]
AT___GG____CC_TT_CC
13._GC-04-053-3-17
ATCTAGGGGGAACG_CCCCGGTTAACC
 5758596061626364656667686970
_Input profile
ACGGAGAAAGAACCGGAAAACCAAAAGG
1._GC-04-53-3-17
ACGGAGAAAGAACCGGAAAACCAAAAGG
2._MITC-000026
ACGGAGAAAGAACCGGAAAACCAAAAGG
3._RUQ_33
ACGGAGAAAGAACCGGAAAACCAAAAGG
4._PA_70_[PER]_Fld#_185_Plt#_1
CCGGGGAAAGAACCAGAAACCCAAAACC
5._RUQ_33
AC_CT___GGGG____AATT
6._PA70[PER]
AC_CT______TT____
7._PA_70_[PER]
AC__TT__GG_______
8._GC-04-053-3-17
ACCCCTTTAAAAGGGGTTTTGGTTAACC
9._PA_70_[PER]
AC__TT__GG_______
10._RUQ_33
AC__TT__GG_______
11._RUQ_33
AC_CTTT__GGGGTT__TTAA_
12._PA_70_[PER]
AC__TT__GT_______
13._GC-04-053-3-17
ACCTCTTTAGAGGTGGCTGTGTGTACGG
 717273747576777879808182  
_Input profile
GGCCGGGGGGCCAGCGGGAAGGAGX_XX_X
1._GC-04-53-3-17
GGCCGGGGGGCCAGCGGGAAGGAGX_XX_X
2._MITC-000026
GGCCGGGGGGCCAGCGGGAAGGAGX_XX_X
3._RUQ_33
GGCCGGGGGGCCAGCGGGAAGGAGX_XX_X
4._PA_70_[PER]_Fld#_185_Plt#_1
GGCCGGGGGGCCGGCCGGAAGGAGX_XX_X
5._RUQ_33
_GG__GG______AGX_XX_X
6._PA70[PER]
GGCCCC_______CC_X_XX_X
7._PA_70_[PER]
_GGCC___CTCG_AACCAGX_XX_X
8._GC-04-053-3-17
_GGCCCCGGCCCTCGCCAACCAGX_XX_X
9._PA_70_[PER]
_GGCC___CTCG_AACCAGX_XX_X
10._RUQ_33
_GGCC___CTCG_AACCAGX_XX_X
11._RUQ_33
_GGCC_GGCC_____AGX_XX_X
12._PA_70_[PER]
_CGCC___TTGG_AATTAGX_XX_X
13._GC-04-053-3-17
AACGCCCCAAAATTGGTTAATTAGX_XX_X

Input profile: PA_70_[PER] MITC-000025

 
USDA-SHRS, United States of America
 Mars, 2018

1._PA_70_[PER] GC-04-53-3-17

identical
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 3, Rep: 17, Tree: 6 > FP2 (verde)
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._PA_70_[PER] MITC-000026

identical
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

3._PA_70_[PER] RUQ_33

identical
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

4._PA_70_[PER] PA_70_[PER]_Fld#_185_Plt#_1

86.4 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 185, Tree: 1
 Mars, 2018

5._PA_70_[PER] RUQ_33

64.7 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

6._PA_70_[PER] PA70[PER]

59.1 %
22 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

7._PA_70_[PER]

50 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D634
 Dapeng Zhang, 2016

8._PA_70_[PER] GC-04-053-3-17

49.4 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2 (verde)
 Mars, 2018

9._PA_70_[PER]

48.6 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 6 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._PA_70_[PER] RUQ_33

48.6 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

11._PA_70_[PER] RUQ_33

45.9 %
37 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._PA_70_[PER]

40 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._PA_70_[PER] GC-04-053-3-17

35.8 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998