SNP Profiles of CCN_51 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AC	AG	AA	AA	AG	AG	AC	AA	GG	AG	AA	AA	CC
1._GC-07-19-1-21	CC	AC	AG	AA	AA	AG	AG	AC	AA	GG	AG	AA	AA	CC
2._RUQ_1736	CC	AC	AG	AA	AA	AG	AG	AC	AA	GG	AG	AA	AA	CC
3._RUQ_1737	_	_	_	_	_	_	AG	_	_	_	_	_	_	_
4._GC-07-019-1-21	CC	AC	AG	AA	TT	CT	AG	GT	AA	CC	AG	TT	_	GG
5._CCN_51	_	_	_	_	_	CT	AG	_	AA	_	_	_	_	_
6._CCN_51	_	_	_	_	_	CT	AG	_	AA	_	_	_	_	_
7._CCN_51	_	_	_	_	_	CT	AG	_	AA	_	_	_	_	_
8._CCN_51	_	_	_	_	_	CT	AG	_	AA	_	_	_	_	_
9._CCN_51	_	_	_	_	_	CT	AG	_	AA	_	_	_	_	_
10._CCN_51	_	_	_	_	_	CT	AG	_	AA	_	_	_	_	_
11._CCN_51	_	_	_	_	_	CT	AG	_	AA	_	_	_	_	_
12._CCN_51	_	_	_	_	_	CT	AG	_	AA	_	_	_	_	_
13._GC-07-019-1-21	CC	AC	AG	AA	TT	CT	AG	GT	AA	CC	AG	TT	TT	GG
14._GC-07-019-1-21	CC	AC	AG	AA	TT	CT	AG	GT	AA	CC	AG	TT	TT	GG
15._GC-07-019-1-21	CC	AC	AG	AA	TT	CT	AG	GT	AA	CC	AG	TT	TT	GG
16._CCN_51	_	_	_	_	_	CT	_	_	AA	_	_	_	_	_
17._CCN_51	_	_	_	_	_	CT	AG	_	AA	_	_	_	_	_
18._GC-07-019-1-21	CC	AC	AG	AA	TT	CT	_	GT	AA	CC	AG	_	TT	_
19._GC-06-4-1-04	CC	AC	AG	AA	TT	CT	AG	GT	AA	CC	AG	TT	TT	GG
20._GC-07-019-1-21	CC	AC	AG	AA	TT	CT	AG	GT	AA	CC	AG	TT	TT	GG
21._GC-07-019-1-21	CC	AC	AG	AA	TT	CT	AG	GT	AA	CC	AG	TT	TT	GG
22._CCN_51	_	_	_	_	_	TT	AA	_	AA	_	_	_	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AA	AG	AA	AC	GG	AA	AG	AC	AA	CC	AG	AA	GG
1._GC-07-19-1-21	AG	AA	AG	AA	AC	GG	AA	AG	AC	AA	CC	AG	AA	GG
2._RUQ_1736	AG	AA	AG	AA	AC	GG	AA	AG	AC	AA	CC	AG	AA	GG
3._RUQ_1737	_	TT	_	_	_	_	_	_	AC	_	GG	_	_	_
4._GC-07-019-1-21	CT	TT	CT	TT	AC	GG	TT	CT	AC	TT	GG	AG	TT	CC
5._CCN_51	_	TT	CT	_	AC	_	TT	_	AC	TT	GG	AG	TT	CC
6._CCN_51	_	TT	CT	_	AC	_	TT	_	AC	TT	GG	AG	TT	CC
7._CCN_51	_	TT	CT	_	AC	_	TT	_	AC	TT	GG	AG	TT	CC
8._CCN_51	_	TT	CT	_	AC	_	TT	_	AC	TT	GG	AG	TT	CC
9._CCN_51	_	TT	CT	_	AC	_	TT	_	AC	TT	GG	AG	TT	CC
10._CCN_51	_	TT	CT	_	AC	_	TT	_	AC	TT	GG	AG	TT	CC
11._CCN_51	_	TT	CT	_	AC	_	TT	_	AC	TT	GG	AG	TT	CC
12._CCN_51	_	TT	CT	_	AC	_	TT	_	AC	TT	GG	AG	TT	CC
13._GC-07-019-1-21	CT	TT	CT	TT	AC	GG	TT	CT	AC	TT	GG	AG	TT	CC
14._GC-07-019-1-21	CT	TT	CT	TT	AC	GG	TT	CT	AC	TT	GG	AG	TT	CC
15._GC-07-019-1-21	CT	TT	CT	TT	AC	GG	TT	CT	AC	TT	GG	AG	TT	CC
16._CCN_51	_	TT	CT	_	AC	_	TT	_	AC	TT	GG	AG	TT	CC
17._CCN_51	_	TT	CT	_	AC	_	TT	_	AC	TT	GG	AG	TT	CC
18._GC-07-019-1-21	CT	TT	CT	TT	AC	GG	TT	CT	AC	TT	GG	AG	TT	CC
19._GC-06-4-1-04	CT	TT	CT	TT	AC	GG	TT	CT	AC	TT	GG	AG	TT	CC
20._GC-07-019-1-21	CT	TT	CT	TT	AC	GG	TT	CT	AC	TT	GG	AG	TT	CC
21._GC-07-019-1-21	CT	TT	CT	TT	AC	GG	TT	CT	AC	TT	GG	AG	TT	CC
22._CCN_51	_	GG	CC	_	AA	_	TT	_	AA	TT	CC	GG	GG	TT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AG	AT	AG	AA	CG	AA	GG	AG	GG	CC	TT	TT	AG	AG
1._GC-07-19-1-21	AG	AT	AG	AA	CG	AA	GG	AG	GG	CC	TT	TT	AG	AG
2._RUQ_1736	AG	AT	AG	AA	CG	AA	GG	AG	GG	CC	TT	TT	AG	AG
3._RUQ_1737	_	_	_	_	_	AA	_	_	_	_	_	_	AG	_
4._GC-07-019-1-21	CT	AT	AG	AA	CG	AA	GG	CT	GG	GG	AA	TT	AG	AG
5._CCN_51	CT	_	_	AA	CG	AA	_	CT	GG	_	_	TT	_	_
6._CCN_51	CT	_	_	AA	CG	AA	_	CT	GG	_	_	TT	_	_
7._CCN_51	CT	_	_	AA	CG	AA	_	CT	GG	_	_	TT	_	_
8._CCN_51	CT	_	_	AA	CG	AA	_	CT	GG	_	_	TT	_	_
9._CCN_51	CT	_	_	AA	CG	AA	_	CT	GG	_	_	TT	_	_
10._CCN_51	CT	_	_	AA	CG	AA	_	CT	GG	_	_	TT	_	_
11._CCN_51	CT	_	_	AA	CG	AA	_	CT	GG	_	_	TT	_	_
12._CCN_51	CT	_	_	AA	CG	AA	_	CT	GG	_	_	TT	_	_
13._GC-07-019-1-21	CT	AT	AG	AA	CG	AA	GG	CT	GG	GG	AA	TT	AG	AG
14._GC-07-019-1-21	CT	AT	AG	AA	CG	AA	GG	CT	GG	GG	AA	TT	AG	AG
15._GC-07-019-1-21	CT	AT	AG	AA	CG	AA	GG	CT	GG	GG	AA	TT	AG	AG
16._CCN_51	CT	_	_	AA	CG	AA	_	CT	GG	_	_	TT	_	_
17._CCN_51	CT	_	_	AA	CG	AA	_	CT	GG	_	_	TT	_	_
18._GC-07-019-1-21	CT	_	AG	AA	CG	AA	_	CT	GG	GG	AA	TT	AG	AG
19._GC-06-4-1-04	CT	_	AG	AA	_	AA	_	CT	GG	GG	AA	TT	AG	AG
20._GC-07-019-1-21	CT	_	AG	AA	CG	AA	_	CT	GG	GG	AA	TT	AG	AG
21._GC-07-019-1-21	CT	_	AG	AA	CG	AA	_	CT	GG	GG	AA	TT	AG	AG
22._CCN_51	CC	_	_	CC	GG	GG	_	TT	GG	_	_	AA	_	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	AG	AG	GG	GG	AA	GG	AG	AC	AC	AG	AA	AG	CC
1._GC-07-19-1-21	AA	AG	AG	GG	GG	AA	GG	AG	AC	AC	AG	AA	AG	CC
2._RUQ_1736	AA	AG	AG	GG	GG	AA	GG	AG	AC	AC	AG	AA	AG	CC
3._RUQ_1737	_	_	_	_	_	_	_	_	_	AA	_	_	_	CC
4._GC-07-019-1-21	AA	CT	AG	GG	GG	AA	CC	_	AC	AC	AG	TT	AG	CC
5._CCN_51	AA	_	_	_	GG	_	_	_	_	AC	_	TT	_	CC
6._CCN_51	AA	_	_	_	GG	_	_	_	_	AC	_	TT	_	CC
7._CCN_51	AA	_	_	_	GG	_	_	_	_	AC	_	TT	_	CC
8._CCN_51	AA	_	_	_	GG	_	_	_	_	AC	_	TT	_	CC
9._CCN_51	AA	_	_	_	GG	_	_	_	_	AC	_	TT	_	CC
10._CCN_51	AA	_	_	_	GG	_	_	_	_	AC	_	TT	_	CC
11._CCN_51	AA	_	_	_	GG	_	_	_	_	AC	_	TT	_	CC
12._CCN_51	AA	_	_	_	GG	_	_	_	_	AC	_	TT	_	CC
13._GC-07-019-1-21	AA	CT	AG	GG	GG	AA	CC	_	AC	AC	AG	TT	AG	CC
14._GC-07-019-1-21	AA	CT	AG	GG	GG	AA	CC	_	AC	AC	AG	TT	AG	CC
15._GC-07-019-1-21	AA	CT	AG	GG	GG	AA	CC	_	AC	AC	AG	TT	AG	CC
16._CCN_51	AA	_	_	_	GG	_	_	_	_	AC	_	TT	_	CC
17._CCN_51	AA	_	_	_	GG	_	_	_	_	AC	_	TT	_	CC
18._GC-07-019-1-21	AA	CT	_	GG	GG	AA	CC	CT	AC	AC	AG	TT	AG	CC
19._GC-06-4-1-04	AA	CT	AG	GG	GG	AA	CC	CT	AC	AC	AG	TT	AG	CC
20._GC-07-019-1-21	AA	CT	AG	GG	GG	_	CC	CT	AC	AC	AG	TT	AG	CC
21._GC-07-019-1-21	AA	CT	AG	GG	GG	_	CC	CT	AC	AC	AG	TT	AG	CC
22._CCN_51	TT	_	_	_	GG	_	_	_	_	CC	_	GG	_	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	AG	GG	AG	AG	AA	CC	GG	AA	AC	AC	AC	CC	CG
1._GC-07-19-1-21	CC	AG	GG	AG	AG	AA	CC	GG	AA	AC	AC	AC	CC	CG
2._RUQ_1736	CC	AG	GG	AG	AG	AA	CC	GG	AA	AC	AC	AC	CC	CG
3._RUQ_1737	CC	_	CC	_	_	_	GG	GG	_	_	_	_	CC	TT
4._GC-07-019-1-21	CC	CT	CC	CT	AA	AG	GG	GG	TT	GT	GT	GT	CC	CG
5._CCN_51	CC	_	_	CT	_	_	GG	_	_	_	_	_	_	_
6._CCN_51	CC	_	_	CT	_	_	GG	_	_	_	_	_	_	_
7._CCN_51	CC	_	_	CT	_	_	GG	_	_	_	_	_	_	_
8._CCN_51	CC	_	_	CT	_	_	GG	_	_	_	_	_	_	_
9._CCN_51	CC	_	_	CT	_	_	GG	_	_	_	_	_	_	_
10._CCN_51	CC	_	_	CT	_	_	GG	_	_	_	_	_	_	_
11._CCN_51	CC	_	_	CT	_	_	GG	_	_	_	_	_	_	_
12._CCN_51	CC	_	_	CT	_	_	GG	_	_	_	_	_	_	_
13._GC-07-019-1-21	CC	CT	CC	CT	AA	AG	GG	GG	TT	GT	GT	GT	CC	CG
14._GC-07-019-1-21	CC	CT	CC	CT	AA	AG	GG	GG	TT	GT	GT	GT	CC	CG
15._GC-07-019-1-21	CC	CT	CC	CT	AA	AG	GG	GG	TT	GT	GT	GT	CC	CG
16._CCN_51	_	_	_	CT	_	_	GG	_	_	_	_	_	_	_
17._CCN_51	CC	_	_	CT	_	_	GG	_	_	_	_	_	_	_
18._GC-07-019-1-21	_	CT	CC	CT	AA	AG	GG	GG	TT	GT	GT	GT	CC	CG
19._GC-06-4-1-04	CC	CT	CC	CT	AA	AG	GG	GG	TT	GT	GT	GT	CC	CG
20._GC-07-019-1-21	CC	CT	CC	CT	AA	AG	GG	GG	TT	GT	GT	GT	CC	CG
21._GC-07-019-1-21	CC	CT	CC	CT	AA	AG	GG	GG	_	GT	GT	GT	CC	CG
22._CCN_51	CC	_	_	CC	_	_	TT	_	_	_	_	_	_	_

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	AG	GG	GG	GG	AG	AC	AG	GG	AG	AA	AA	AA	X_X	X_X
1._GC-07-19-1-21	AG	GG	GG	GG	AG	AC	AG	GG	AG	AA	AA	AA	X_X	X_X
2._RUQ_1736	AG	GG	GG	GG	AG	AC	AG	GG	AG	AA	AA	AA	X_X	X_X
3._RUQ_1737	_	CC	_	_	AG	_	_	_	_	_	_	AA	X_X	X_X
4._GC-07-019-1-21	AA	CC	CC	CC	AG	AC	CT	GG	CT	AA	TT	AA	X_X	X_X
5._CCN_51	_	CC	CC	_	_	_	CT	GG	_	AA	TT	AA	X_X	X_X
6._CCN_51	_	CC	CC	_	_	_	CT	GG	_	AA	TT	AA	X_X	X_X
7._CCN_51	_	CC	CC	_	_	_	CT	GG	_	AA	TT	AA	X_X	X_X
8._CCN_51	_	CC	CC	_	_	_	CT	GG	_	AA	TT	AA	X_X	X_X
9._CCN_51	_	CC	CC	_	_	_	CT	GG	_	AA	TT	AA	X_X	X_X
10._CCN_51	_	CC	CC	_	_	_	CT	GG	_	AA	TT	AA	X_X	X_X
11._CCN_51	_	CC	CC	_	_	_	CT	GG	_	AA	CT	AA	X_X	X_X
12._CCN_51	_	CC	CC	_	_	_	CT	GG	_	AA	CT	AA	X_X	X_X
13._GC-07-019-1-21	AA	CC	CC	CC	AG	AC	CT	GG	CT	AA	TT	AA	X_X	X_X
14._GC-07-019-1-21	AA	CC	CC	CC	AG	AC	CT	GG	CT	AA	TT	AA	X_X	X_X
15._GC-07-019-1-21	AA	CC	CC	CC	AG	AC	CT	GG	CT	AA	TT	AA	X_X	X_X
16._CCN_51	_	_	CC	_	_	_	CT	GG	_	AA	TT	AA	X_X	X_X
17._CCN_51	_	CC	CC	_	_	_	CT	_	_	AA	TT	AA	X_X	X_X
18._GC-07-019-1-21	AA	_	CC	CC	AG	AC	CT	GG	CT	AA	TT	AA	X_X	X_X
19._GC-06-4-1-04	AA	CC	CC	CC	AG	AC	CT	GG	CT	AA	TT	AA	X_X	X_X
20._GC-07-019-1-21	AA	CC	CC	CC	AG	AC	CT	GG	CT	AA	TT	AA	X_X	X_X
21._GC-07-019-1-21	AA	CC	CC	CC	AG	AC	CT	_	CT	AA	TT	AA	X_X	X_X
22._CCN_51	_	CC	CC	_	_	_	TT	GG	_	AA	CC	AA	X_X	X_X

Input profile: CCN_51 MITC-000000

Offtype View View all

USDA-SHRS, United States of America

1._CCN_51 GC-07-19-1-21

identical
82 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: 3 > FP1

Notes: Brazil_Selections_Poss_grandparent

2._CCN_51 RUQ_1736

identical
82 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

3._CCN_51 RUQ_1737

61.8 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

4._CCN_51 GC-07-019-1-21

51.9 %
80 shared markers

Reference View View all Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

5._CCN_51

51.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 10

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._CCN_51

51.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 12

Dapeng Zhang, 2016

7._CCN_51

51.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 13

Dapeng Zhang, 2016

8._CCN_51

51.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 14

Dapeng Zhang, 2016

9._CCN_51

51.4 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 3 > FP

Dapeng Zhang, 2016

10._CCN_51

51.4 %
35 shared markers

Verified View View all Any

Estation Experimental Tropical Pichilingue, Ecuador

Dapeng Zhang, 2016

11._CCN_51

51.4 %
35 shared markers

View View all Clone Any

USAPEN

Dapeng Zhang, 2016

12._CCN_51

51.4 %
35 shared markers

View View all Clone Any

USASPC

Dapeng Zhang, 2016

13._CCN_51 GC-07-019-1-21

51.2 %
81 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

14._CCN_51 GC-07-019-1-21

51.2 %
81 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

15._CCN_51 GC-07-019-1-21

51.2 %
81 shared markers

Verified View View all Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

16._CCN_51

50 %
32 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 6 > FP

Dapeng Zhang, 2016

17._CCN_51

50 %
34 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 4 > FP

Dapeng Zhang, 2016

18._CCN_51 GC-07-019-1-21

49.3 %
74 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL6

Notes: PL6 FP4

19._CCN_51 GC-06-4-1-04

48.7 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 6, Block: 1, Rep: 4, Tree: PL7

Notes: PL7 FP

20._CCN_51 GC-07-019-1-21

48.7 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL3

Notes: PL3 FP1

21._CCN_51 GC-07-019-1-21

48.7 %
77 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL4

Notes: PL4 FP2

22._CCN_51

34.3 %
35 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998