SNP Profiles of ICS 1   View Data

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 1234567891011121314
_Input profile
CCACGGAAAGAAAAACAAGGAAAAAACC
1._RUQ_847
CCACGGAAAGAAAAACAAGGAAAAAACC
2._ICS_1_Fld#_73_Plt#_2
CCACGGAAAGAAAAACAAGGAAAAAACC
3._RUQ_847
_____TT____AA___
4._ICS1
_____CC____GG___
5._ICS_1
_____TTAA_AA_____
6._ICS_1
_____TTAA_AA_____
7._ICS_1
_____TTAA_AA_____
8._ICS_1
_____TTAA_AA_____
9._ICS_1
_____TTAA_AA_____
10._ICS_1
_____TTAA_AA_____
11._ICS_1
_____TTAA_AA_____
12._RUQ_847
_____TTAA_AA_____
13._RUQ_847
_____TTAA_AA_____
14._RUQ_847
_____TT_GT__AA___
15._ICS_1
_____CCGG_AA_____
16._NA
CCACGGAACTTTAAGTAACCAATTTTGG
17._NA
CCACGGAACTTTAAGTAACCAATTTTGG
18._NA
CCACGGAACTTTAAGTAACCAATTTTGG
19._NA
CCACGGAACTTTAAGTAACCAATTTTGG
20._NA
CCACGGAACTTTAAGTAACCAATTTTGG
21._NA
CCACGGAACTTTAAGTAACCAATTTTGG
 1516171819202122232425262728
_Input profile
GGAAGGAGAAGGAAAAAAAGCCAAACGG
1._RUQ_847
GGAAGGAGAAGGAAAAAAAGCCAAACGG
2._ICS_1_Fld#_73_Plt#_2
GGAAGGAGAAGGAAAAAAAGCCAAACGG
3._RUQ_847
_______TTAA_CC__CC
4._ICS1
_______CTCC_CG__CT
5._ICS_1
_TTCC_AA_TT_AACTGGAAGTCC
6._ICS_1
_TTCC_AA_TT_AACTGGAAGTCC
7._ICS_1
_TTCC_AA_TT_AACTGGAAGTCC
8._ICS_1
_TTCC_AA_TT_AACTGGAAGTCC
9._ICS_1
_TTCC_AA_TT_AACTGGAAGTCC
10._ICS_1
_TTCC_AA_TT_AACTGGAAGTCC
11._ICS_1
_TTCC_AA_TT_AACTGGAAGTCC
12._RUQ_847
_TTCC_AA_TT_AACTGGAGGTCC
13._RUQ_847
_TTCC_AA_TT_AACTGGAGGTCC
14._RUQ_847
_TT_CT___TTAACTGGAAGTCC
15._ICS_1
_TTTT_AC_TT_ACCTGGGGGTCC
16._NA
CCTTCCTTAAGGTTTTAACTGGAAGTCC
17._NA
CCTTCCTTAAGGTTTTAACTGGAAGTCC
18._NA
CCTTCCTTAAGGTTTTAACTGGAAGTCC
19._NA
CCTTCCTTAAGGTTTTAACTGGAAGTCC
20._NA
CCTTCCTTAAGGTTTTAACTGGAAGTCC
21._NA
CCTTCCTTAAGGTTTTAACTGGAAGTCC
 2930313233343536373839404142
_Input profile
AATTAGAACGAGGGAGGGCCATATAGAA
1._RUQ_847
AATTAGAACGAGGGAGGGCCATATAGAA
2._ICS_1_Fld#_73_Plt#_2
AATTAGAACGAGGGAGGGCCATATAGAA
3._RUQ_847
__AGAACGAG_______AA
4._ICS1
__AGACCGAG_______AG
5._ICS_1
TT__AACGAG_CTGG__AT__
6._ICS_1
TT__AACGAG_CTGG__AT__
7._ICS_1
TT__AACGAG_CTGG__AT__
8._ICS_1
TT__AACGAG_CTGG__AT__
9._ICS_1
TT__AACGAG_CTGG__AT__
10._ICS_1
TT__AACGAG_CTGG__AT__
11._ICS_1
TT__AACGAG_CTGG__AT__
12._RUQ_847
TT__AACGAG_CTGG__AT__
13._RUQ_847
TT__AACGAG_CTGG__AT__
14._RUQ_847
__AGAACGAG_CT____AGAA
15._ICS_1
CT__AACCAA_CCGG__AT__
16._NA
TTAAAGAACGAGGGCTGGGGATATAGAA
17._NA
TTAAAGAACGAGGGCTGGGGATATAGAA
18._NA
TTAAAGAACGAGGGCTGGGGATATAGAA
19._NA
TTAAAGAACGAGGGCTGGGGATATAGAA
20._NA
TTAAAGAACGAGGGCTGGGGATATAGAA
21._NA
TTAAAGAACGAGGGCTGGGGATATAGAA
 4344454647484950515253545556
_Input profile
ATAGAGGGGGAACGAACCCCGGAAAACC
1._RUQ_847
ATAGAGGGGGAACGAACCCCGGAAAACC
2._ICS_1_Fld#_73_Plt#_2
ATAGAGGGGGAACGAACCCCGGAAAACC
3._RUQ_847
ATCT____CG______CC
4._ICS1
TTCT____GG______CC
5._ICS_1
AT___GG____CC_TT_CC
6._ICS_1
AT___GG____CC_TT__
7._ICS_1
AT___GG____CC_TT_CC
8._ICS_1
AT___GG____CC_TT_CC
9._ICS_1
AT___GG____CC_TT_CC
10._ICS_1
AT___GG____CC_TT_CC
11._ICS_1
AT___GG____CC_TT_CC
12._RUQ_847
AT___GG____CC_TT_CC
13._RUQ_847
AT___GG____CC_TT_CC
14._RUQ_847
AT_____CG__CC_TT_CC
15._ICS_1
AA___GG____AA_GG_CG
16._NA
ATCTAGGGGGAACG_CCCCGGTTAACC
17._NA
ATCTAGGGGGAACG_CCCCGGTTAACC
18._NA
ATCTAGGGGGAACG_CCCCGGTTAA_
19._NA
ATCTAGGGGGAACG_CCCCGGTTAACC
20._NA
ATCTAGGGGGAACG_CCCCGGTTAACC
21._NA
ATCTAGGGGGAACG_CCCCGGTTAACC
 5758596061626364656667686970
_Input profile
ACAGAGAAAGAGACGGAGACACACACCC
1._RUQ_847
ACAGAGAAAGAGACGGAGACACACACCC
2._ICS_1_Fld#_73_Plt#_2
ACAGAGAAAGAGACGGAGACACACACCC
3._RUQ_847
AC_CT______GT____
4._ICS1
CC_CC______GT____
5._ICS_1
AC__TT__GT_______
6._ICS_1
AC__TT__GT_______
7._ICS_1
AC__TT__GT_______
8._ICS_1
AC__TT__GT_______
9._ICS_1
AC__TT__GT_______
10._ICS_1
AC__TT__GT_______
11._ICS_1
AC__TT__GT_______
12._RUQ_847
AC__TT__GT_______
13._RUQ_847
AC__CT__GT_______
14._RUQ_847
AA_CTTT__GTGGCT__GTAC_
15._ICS_1
CC__TT__GG_______
16._NA
ACCTCTTTAGAGGTGGCTGTGTGTACGG
17._NA
ACCTCTTTAGAGGTGGCTGTGTGTACGG
18._NA
ACCTCTTTAGAGGTGGCTGTGTGTACGG
19._NA
ACCTCTTTAGAGGTGGCTGTGTGTACGG
20._NA
ACCTCTTTAGAGGTGGCTGTGTGTACGG
21._NA
ACCTCTTTAGAGGTGGCTGTGTGTACGG
 717273747576777879808182  
_Input profile
AGCGGGGGAAAAAAGGAAAAAAAGX_XX_X
1._RUQ_847
AGCGGGGGAAAAAAGGAAAAAAAGX_XX_X
2._ICS_1_Fld#_73_Plt#_2
AGCGGGGGAAAAAAGGAAAAAAAGX_XX_X
3._RUQ_847
AGCGCC_______TT_X_XX_X
4._ICS1
AGCGCT_______CT_X_XX_X
5._ICS_1
_CGCC___TTGG_AATTAGX_XX_X
6._ICS_1
_CGCC___TTGG_AATTAGX_XX_X
7._ICS_1
_CGCC___TTGG_AATTAGX_XX_X
8._ICS_1
_CGCC___TTGG_AATTAGX_XX_X
9._ICS_1
_CGCC___TTGG_AATTAGX_XX_X
10._ICS_1
_CGCC___TTGG_AATTAGX_XX_X
11._ICS_1
__CC___TTGG_AATTAGX_XX_X
12._RUQ_847
_CGCC___TTGG_AATTAGX_XX_X
13._RUQ_847
_CGCC___TTGG_AATTAGX_XX_X
14._RUQ_847
_CGCC_-AA_____AGX_XX_X
15._ICS_1
_GGCC___TTCG_AATTAGX_XX_X
16._NA
AACGCCCCAAAATTGGTTAATTAGX_XX_X
17._NA
AACGCCCCAAAATTGGTTAATTAGX_XX_X
18._NA
AACGCCCCAAAATTGGTTAATTAGX_XX_X
19._NA
AACGCCCCAAAATTGGTTAATTAGX_XX_X
20._NA
AACGCCCCAAAATTGGTTAATTAGX_XX_X
21._NA
AACGCCCCAAAATTGGTTAATTAGX_XX_X

Input profile: ICS_1 MITC-000297

 
USDA-SHRS, United States of America
 Mars, 2018

1._ICS_1 RUQ_847

identical
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._ICS_1 ICS_1_Fld#_73_Plt#_2

identical
82 shared markers

USDA-TARS, United States of America
Location: Field: 73, Tree: 2
 Mars, 2018

3._ICS_1 RUQ_847

63.6 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

4._ICS_1 ICS1

34.1 %
22 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

5._ICS_1

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

6._ICS_1

52.9 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

7._ICS_1

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

8._ICS_1

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

9._ICS_1

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

10._ICS_1

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._ICS_1

52.9 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

12._ICS_1 RUQ_847

52.9 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

13._ICS_1 RUQ_847

52.9 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._ICS_1 RUQ_847

48.6 %
37 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._ICS_1

25.7 %
35 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

16._ICS_1 NA

53.1 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

17._ICS_1 NA

53.1 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

18._ICS_1 NA

52.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

19._ICS_1 NA

53.1 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

20._ICS_1 NA

53.1 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

21._ICS_1 NA

53.1 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

 

 Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998