SNP Profiles of ICS 1   View Data

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 Key

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_Input profile
CCTTAAAATTCCTTCCCGCGAGGTGGCT
1._RUQ_847
GG___TT_TTCC_CG____
2._ICS_1
GG___TT_TTCC_CG____
3._ICS_1
GG___TT_TTCC_CG____
4._ICS_1
GG___TT_TTCC_CG____
5._ICS_1
GG___TT_TTCC_CG____
6._ICS_1
GG___TT_TTCC_CG____
7._ICS_1
GG___TT_TTCC_CG____
8._ICS_1
GG___TT_TTCC______
9._RUQ_847
GG___TT_TTCC_CG____
10._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
11._RUQ_847
GGTTAAAATT__CCCGCG___CT
12._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
13._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
14._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
15._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
16._NA
GGTTAAAATTCCTTCCCGCGAAGTGGCT
17._ICS_1
GG___CC_TTCC_GG____
18._RUQ_847
CCAA_AAAA_AAGG_CGAGAC_AG
19._MITC-000297
CCAA_AAAA_AAGG_CGAGAC_AG
20._ICS_1_Fld#_73_Plt#_2
CCAA_AAAA_AAGG_CGAGAC_AG
21._ICS1
CGCTTTGGCCCCCTCTGGCGAGGTAGCC
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_Input profile
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
1._RUQ_847
ACCC__AT_AGCGAA_CCAAX_XX_X
2._ICS_1
ACCC__AT_AGCGAA_CCAAX_XX_X
3._ICS_1
AC___AT_AGCGAA_CCAAX_XX_X
4._ICS_1
ACCC__AT_AGCGAA_CCAAX_XX_X
5._ICS_1
ACCC__AT_AGCGAA_CCAAX_XX_X
6._ICS_1
ACCC__AT_AGCGAA_CCAAX_XX_X
7._ICS_1
ACCC__AT_AGCGAA_CCAAX_XX_X
8._ICS_1
ACCC__AT_AGCGAA_CCAAX_XX_X
9._RUQ_847
ACCC__AT_AGCGAA_CCAAX_XX_X
10._NA
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
11._RUQ_847
AACCCG_ATAAAGCGAAAGCCAAX_XX_X
12._NA
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
13._NA
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
14._NA
AC_CGCTATAAAGCGAAAGCCAAX_XX_X
15._NA
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
16._NA
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X
17._ICS_1
CCCG__AA_AACCAA_CCACX_XX_X
18._RUQ_847
ACCCCGAGATAAAGCGAAAGGGAAX_XX_X
19._MITC-000297
ACCCCGAGATAAAGCGAAAGGGAAX_XX_X
20._ICS_1_Fld#_73_Plt#_2
ACCCCGAGATAAAGCGAAAGGGAAX_XX_X
21._ICS1
CCCCGGCTTTAGAGCGACAGCTCCX_XX_X

Input profile: ICS_1 RUQ_847

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

1._ICS_1 RUQ_847

92.3 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._ICS_1

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

3._ICS_1

91.7 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

4._ICS_1

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

5._ICS_1

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

6._ICS_1

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

7._ICS_1

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._ICS_1

91.7 %
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

9._ICS_1 RUQ_847

92.3 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._ICS_1 NA

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._ICS_1 RUQ_847

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._ICS_1 NA

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._ICS_1 NA

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

14._ICS_1 NA

92 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

15._ICS_1 NA

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._ICS_1 NA

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

17._ICS_1

38.5 %
13 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

18._ICS_1 RUQ_847

63.6 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

19._ICS_1 MITC-000297

63.6 %
22 shared markers

USDA-SHRS, United States of America
 Mars, 2018

20._ICS_1 ICS_1_Fld#_73_Plt#_2

63.6 %
22 shared markers

USDA-TARS, United States of America
Location: Field: 73, Tree: 2
 Mars, 2018

21._ICS_1 ICS1

50 %
26 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

 

 Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144