SNP Profiles of SCA11   View Data

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 Key

 1234567891011121314
_Input profile
GGCCTTGGCCCGCTCTGGGGGGTTAACC
1._RUQ_374
CCCCTTAGCC__TTGGCC___CC
2._SCA_11
GG___CT_CTCC_CG____
3._GC-08-157-3-56
CCCCTTGGCCCCCCTTCG_AATTGGCC
4._GC-08-157-3-56
CCCCTTGGCCCCCCTTCG_AATTGGCC
5._GC-01-117-6-14
CCCCTTGGCCCCCC_CGCCAATTGGCC
6._GC-01-117-6-14
CCCCTTGGCCCCCCTTCGCCAATTGGCC
7._GC-08-157-3-56
CCCCTTGGCCCCCCTTCGCCAATTGGCC
8._GC-08-157-3-56
CCCCTTGGCCCCCCTTCGCCAATTGGCC
9._GC-08-157-3-56
CCCCTTGGCCCCCCTTCGCCAATTGGCC
10._GC-08-157-3-56
CCCCTTGGCCCCCCTTCGCCAATTGGCC
11._GC-01-117-6-14
CCCCTTGGCCCCCCTTCGCCAATTGGCC
12._GC-01-117-6-14
CCCCTTGGCCCCCCTTCGCCAATTGGCC
13._GC-01-117-6-14
CCCCTTGGCCCCCCTTCGCCAATTGGCC
14._GC-08-157-3-56
CCCCTTGGCCCCCCTTCGCCAATTGGCC
15._GC-01-117-6-14
CCCCTTGGCCCCCCTTCGCCAATTGGCC
16._GC-08-157-3-56
CCCCTTGGCCCCCCTTCGCCAATTGGCC
17._GC-08-157-3-56
CCCCTTGGCCCCCCTTCGCCAATTGGCC
18._GC-08-157-3-56
CCCCTTGGCCCCCCTTCGCCAATTGGCC
19._GC-08-157-3-56
CCCCTTGGCCCCCCTTCGCCAATTGGCC
20._GC-08-157-3-56
CCCCTTGGCCCCCCTTCGCCAATTGGCC
21._GC-08-157-3-56
CCCCTTGGCCCCCCTTCGCCAATTGGCC
22._GC-08-157-3-56
CCCCTTGGCCCCCCTTCGCCAATTGGCC
23._GC-08-157-3-56
CCCCTTGGCCCCCCTTCGCCAATTGGCC
24._GC-08-157-3-56
CCCCTTGGCCCCCCTTCGCCAATTGGCC
25._GC-08-157-3-56
CCCCTTGGCCCCCCTTCGCCAATTGGCC
26._GC-08-157-3-56
CCCCTTGGCCCCCCTTCGCCAATTGGCC
27._GC-08-157-3-56
CCCCTTGGCCCCCCTTCGCCAATTGGCC
28._GC-08-157-3-56
CCCCTTGGCCCCCCTTCGCCAA_GGCC
29._RUQ_374
CC___CC_CCTT_CC____
30._SCA_11
CC___CC_CCTT_CC____
31._RUQ_1686
GGGG_GGGG_GGAA_GGAAAA_GG
32._MITC-000057
GGGG_AGGG_GGAA_GGAAAA_GG
33._SCA_11
CC___CC_CCTT______
34._SCA_11
CC___CC_CCTT______
35._SCA_11
CC___CC_CCTT_CC____
36._SCA_11
CC___CC_CCTT_CC____
37._SCA_11
CC___CC_CCTT_CC____
38._SCA_11
CC___CC_CCTT_CC____
39._SCA_11
CC___CC_CCTT_CC____
40._SCA_11
CC___CC_CCTT_CC____
41._SCA_11
CC___CC_CCTT_CC____
42._SCA_11
CC___CC_CCTT_CC____
43._SCA_11
CC___CC_CCTT_CC____
44._SCA_11
CC___CC_CCTT_CC____
45._SCA_11
CC___CC_CCTT_CC____
46._SCA_11
CC___CC_CCTT_CC____
47._SCA_11
CC___CC_CCTT_CC____
48._SCA_11
CC___CC_CCTT_CC____
49._SCA_11
CC___CC_CCTT_CC____
50._SCA_11
CC___CC_CCTT_CC____
51._SCA_11
CC___CC_CCTT_CC____
52._SCA_11
CC___CC_CCTT_CC____
53._SCA_11
CC___CC_CCTT_CC____
54._SCA_11
CC___CC_CCTT_CC____
55._SCA_11
CC___CC_CCTT_CC____
56._SCA_11
CC___CC_CCTT_CC____
57._SCA_11
CC___CC_CCTT_CC____
58._SCA_11
CC___CC_CC__CC____
 151617181920212223242526  
_Input profile
AAGGCCCTATGGAGCGAAGGCCACX_XX_X
1._RUQ_374
CCCCGG_AAGGAGCGCCGGTTCCX_XX_X
2._SCA_11
CCCC__AT_AACCAC_CTCCX_XX_X
3._GC-08-157-3-56
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
4._GC-08-157-3-56
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
5._GC-01-117-6-14
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
6._GC-01-117-6-14
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
7._GC-08-157-3-56
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
8._GC-08-157-3-56
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
9._GC-08-157-3-56
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
10._GC-08-157-3-56
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
11._GC-01-117-6-14
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
12._GC-01-117-6-14
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
13._GC-01-117-6-14
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
14._GC-08-157-3-56
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
15._GC-01-117-6-14
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
16._GC-08-157-3-56
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
17._GC-08-157-3-56
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
18._GC-08-157-3-56
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
19._GC-08-157-3-56
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
20._GC-08-157-3-56
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
21._GC-08-157-3-56
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
22._GC-08-157-3-56
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
23._GC-08-157-3-56
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
24._GC-08-157-3-56
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
25._GC-08-157-3-56
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
26._GC-08-157-3-56
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
27._GC-08-157-3-56
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
28._GC-08-157-3-56
CCCGGGCCAAGGAACCCCGGTTAAX_XX_X
29._RUQ_374
CCCC__AA_AGCGCC_TTACX_XX_X
30._SCA_11
CCCC__AA_AGCGCC_TTACX_XX_X
31._RUQ_1686
CCCGCCGGAAGGAAGGCCGGAAAAX_XX_X
32._MITC-000057
CCCC_GGAAGGAGCGCCGGAAACX_XX_X
33._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
34._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
35._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
36._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
37._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
38._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
39._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
40._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
41._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
42._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
43._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
44._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
45._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
46._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
47._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
48._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
49._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
50._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
51._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
52._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
53._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
54._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
55._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
56._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
57._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X
58._SCA_11
CCCG__AA_AACCCC_TTAAX_XX_X

Input profile: SCA_11 RUQ_1686

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

1._SCA_11 RUQ_374

55 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._SCA_11

53.8 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
 Dapeng Zhang, 2016

3._SCA_11 GC-08-157-3-56

52 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._SCA_11 GC-08-157-3-56

52 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 18
Notes: 18
 Mars, 2018

5._SCA_11 GC-01-117-6-14

50 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

6._SCA_11 GC-01-117-6-14

50 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

7._SCA_11 GC-08-157-3-56

50 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._SCA_11 GC-08-157-3-56

50 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._SCA_11 GC-08-157-3-56

50 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._SCA_11 GC-08-157-3-56

50 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

11._SCA_11 GC-01-117-6-14

50 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

12._SCA_11 GC-01-117-6-14

50 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

13._SCA_11 GC-01-117-6-14

50 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

14._SCA_11 GC-08-157-3-56

50 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._SCA_11 GC-01-117-6-14

50 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

16._SCA_11 GC-08-157-3-56

50 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

17._SCA_11 GC-08-157-3-56

50 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

18._SCA_11 GC-08-157-3-56

50 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._SCA_11 GC-08-157-3-56

50 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

20._SCA_11 GC-08-157-3-56

50 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

21._SCA_11 GC-08-157-3-56

50 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

22._SCA_11 GC-08-157-3-56

50 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 19
Notes: 19
 Mars, 2018

23._SCA_11 GC-08-157-3-56

50 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 20
Notes: 20
 Mars, 2018

24._SCA_11 GC-08-157-3-56

50 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 23
Notes: 23
 Mars, 2018

25._SCA_11 GC-08-157-3-56

50 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 24
Notes: 24
 Mars, 2018

26._SCA_11 GC-08-157-3-56

50 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 25
Notes: 25
 Mars, 2018

27._SCA_11 GC-08-157-3-56

50 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 26
Notes: 26
 Mars, 2018

28._SCA_11 GC-08-157-3-56

48 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

29._SCA_11 RUQ_374

42.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

30._SCA_11

42.3 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 639
 Dapeng Zhang, 2016

31._SCA_11 RUQ_1686

38.6 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

32._SCA_11 MITC-000057

38.1 %
21 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

33._SCA_11

37.5 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8356 18
 Dapeng Zhang, 2016

34._SCA_11

37.5 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8356 13
 Dapeng Zhang, 2016

35._SCA_11

34.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8356 26
 Dapeng Zhang, 2016

36._SCA_11

34.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8356 25
 Dapeng Zhang, 2016

37._SCA_11

34.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8356 24
 Dapeng Zhang, 2016

38._SCA_11

34.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8356 23
 Dapeng Zhang, 2016

39._SCA_11

34.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8356 20
 Dapeng Zhang, 2016

40._SCA_11

34.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8356 19
 Dapeng Zhang, 2016

41._SCA_11

34.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1614 13
 Dapeng Zhang, 2016

42._SCA_11

34.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1614 1 > FP
 Dapeng Zhang, 2016

43._SCA_11

34.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1614 10 > F
 Dapeng Zhang, 2016

44._SCA_11

34.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1614 2 > FP
 Dapeng Zhang, 2016

45._SCA_11

34.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1614 3 > FP
 Dapeng Zhang, 2016

46._SCA_11

34.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8356 1
 Dapeng Zhang, 2016

47._SCA_11

34.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8356 2
 Dapeng Zhang, 2016

48._SCA_11

34.6 %
13 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 3
 Dapeng Zhang, 2016

49._SCA_11

34.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8356 4
 Dapeng Zhang, 2016

50._SCA_11

34.6 %
13 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 6
 Dapeng Zhang, 2016

51._SCA_11

34.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8356 8
 Dapeng Zhang, 2016

52._SCA_11

34.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8356 9
 Dapeng Zhang, 2016

53._SCA_11

34.6 %
13 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 10
 Dapeng Zhang, 2016

54._SCA_11

34.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8356 11
 Dapeng Zhang, 2016

55._SCA_11

34.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8356 14
 Dapeng Zhang, 2016

56._SCA_11

34.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8356 15
 Dapeng Zhang, 2016

57._SCA_11

34.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8356 5
 Dapeng Zhang, 2016

58._SCA_11

33.3 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1614 9
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144