SNP Profiles of GU133/C   View Data

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 Key

 1234567891011121314
_Input profile
CGCCTTGGCCCCCCCCGGCCGGGGAACC
1._GC-08-164-4-07
CGCCTTGGCCCCCCCCCCGG_GGAACC
2._GC-08-164-4-07
CGCCTTGGCCCCCCCCCCGG_GGAACC
3._GC-01-116-6-13
CGCCTTGGCCCCCCCCCCGG_GGAACC
4._GC-01-116-6-13
CGCCTTGGCCCCCCCCCCGG_GGAACC
5._GC-01-116-6-13
CGCCTTGGCCCCCCCCCCGG_GGAACC
6._GC-08-164-4-07
CGCCTTGGCCCCCCCCCCGG_GGAACC
7._GC-08-164-4-07
CGCCTTGGCCCCCCCCCCGG_GGAACC
8._GC-08-164-4-07
CGCCTTGGCCCCCCCCCCGG_GGAACC
9._GC-08-164-4-07
CGCCTTGGCCCCCCCCCCGG_GGAACC
10._GC-01-116-6-13
CGCCTTGGCCCCCCCCCCGG_GGAACC
11._RUQ_190
CG________GG___CC
12._RUQ_190
CGCCTTGGCC__CCCCGG___CC
13._GU_133_/C
CG___CC_CCCC_GG____
14._GU_133_/C
CG___CC_CCCC_GG____
15._GU_133_/C
CG___CC_CCCC_GG____
16._GU_133_/C
CG___CC_CCCC_GG____
17._GU_133_/C
CG___CC_CCCC_GG____
18._GU_133_/C
CG___CC_CCCC_GG____
19._GU_133_/C
CG___CC_CCCC_GG____
20._GU_133_/C
CG___CC_CCCC_GG____
21._RUQ_190
CG___CC_CCCC_GG____
22._GU_133_/C
CG___CC_CCCC_GG____
23._GU_133_/C
CG___CC_CCCC_GG____
24._GU_133_/C
CG___CC_CC__GG____
25._GC-01-116-6-13
CGCCTTGGCCCCCC_CCGGAA_AACC
26._GC-01-116-6-13
CGGG_GGGG_GGGG_CCGGCC_GG
27._MITC-000670
CGGG_GGGG_GGGG_CCGGCC_GG
 151617181920212223242526  
_Input profile
ACCCCCTTAAGGGGGGAAGGTTAAX_XX_X
1._GC-08-164-4-07
ACCCCCTTAAGGGGCCAAGGTTAAX_XX_X
2._GC-08-164-4-07
ACCCCCTTAAGGGGCCAAGGTTAAX_XX_X
3._GC-01-116-6-13
ACCCCCTTAAGGGGCCAAGGTTAAX_XX_X
4._GC-01-116-6-13
ACCCCCTTAAGGGGCCAAGGTTAAX_XX_X
5._GC-01-116-6-13
ACCCCCTTAAGGGGCCAAGGTTAAX_XX_X
6._GC-08-164-4-07
ACCCCCTTAAGGGGCCAAGGTTAAX_XX_X
7._GC-08-164-4-07
ACCCCCTTAAGGGGCCAAGGTTAAX_XX_X
8._GC-08-164-4-07
ACCCCCTTAAGGGGCCAAGGTTAAX_XX_X
9._GC-08-164-4-07
ACCCCCTTAAGGGGCC_GGTTAAX_XX_X
10._GC-01-116-6-13
ACCCCCTTAAGG_CCAAGGTTAAX_XX_X
11._RUQ_190
ACCC____GG____AAX_XX_X
12._RUQ_190
ACCCCC_AAGGGGCCAAGGTTAAX_XX_X
13._GU_133_/C
ACCC__AA_GGCCAA_TTAAX_XX_X
14._GU_133_/C
ACCC__AA_GGCCAA_TTAAX_XX_X
15._GU_133_/C
ACCC__AA_GGCCAA_TTAAX_XX_X
16._GU_133_/C
ACCC__AA_GGCCAA_TTAAX_XX_X
17._GU_133_/C
ACCC__AA_GGCCAA_TTAAX_XX_X
18._GU_133_/C
ACCC__AA_GGCCAA_TTAAX_XX_X
19._GU_133_/C
ACCC__AA_GGCCAA_TTAAX_XX_X
20._GU_133_/C
ACCC__AA_GGCCAA_TTAAX_XX_X
21._RUQ_190
ACCC__AA_GGCCAA_TTAAX_XX_X
22._GU_133_/C
ACCC__AA__CCAA_TTAAX_XX_X
23._GU_133_/C
ACCC__AA_GGCC__TTAAX_XX_X
24._GU_133_/C
ACCC__AA__CCAA_TTAAX_XX_X
25._GC-01-116-6-13
ACCCCC_AAGG_CCAAGGTTAAX_XX_X
26._GC-01-116-6-13
ACCCGGAAAAGGGGGGAAGGAAAAX_XX_X
27._MITC-000670
ACCCGGAAAAGGGGGGAAGGAAAAX_XX_X

Input profile: GU_133_/C RUQ_190

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

1._GU_133_/C GC-08-164-4-07

88 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._GU_133_/C GC-08-164-4-07

88 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._GU_133_/C GC-01-116-6-13

88 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

4._GU_133_/C GC-01-116-6-13

88 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

5._GU_133_/C GC-01-116-6-13

88 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._GU_133_/C GC-08-164-4-07

88 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

7._GU_133_/C GC-08-164-4-07

88 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._GU_133_/C GC-08-164-4-07

88 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

9._GU_133_/C GC-08-164-4-07

87.5 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._GU_133_/C GC-01-116-6-13

87.5 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._GU_133_/C RUQ_190

85.7 %
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

12._GU_133_/C RUQ_190

85 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._GU_133_/C

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

14._GU_133_/C

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

15._GU_133_/C

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

16._GU_133_/C

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

17._GU_133_/C

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

18._GU_133_/C

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

19._GU_133_/C

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

20._GU_133_/C

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

21._GU_133_/C RUQ_190

84.6 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._GU_133_/C

83.3 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

23._GU_133_/C

83.3 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

24._GU_133_/C

81.8 %
11 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

25._GU_133_/C GC-01-116-6-13

81.8 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

26._GU_133_/C GC-01-116-6-13

59.1 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

27._GU_133_/C MITC-000670

59.1 %
22 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144