SNP Profiles of PA70[PER]   View Data

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 Key

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_Input profile
CCCCTTGGCCCCCCCCGGCCGGTTAACT
1._GC-04-053-3-17
GGCCTTGGCCCCCCCCCCGG_TTAACT
2._PA_70_[PER]
GG___CC_CCCC_GG____
3._RUQ_33
GGCCTTGGCC__CCCCGG___CT
4._PA_70_[PER]
GG___CC_CCCC_GG____
5._RUQ_33
GG___CC_CCCC_GG____
6._RUQ_33
GG________GG___CT
7._PA_70_[PER]
GG___TT_TTCC_CG____
8._GC-04-53-3-17
CCGG_GGGG_GGGG_CCGGAA_AG
9._RUQ_33
CCGG_GGGG_GGGG_CCGGAA_AG
10._MITC-000025
CCGG_GGGG_GGGG_CCGGAA_AG
11._MITC-000026
CCGG_GGGG_GGGG_CCGGAA_AG
12._PA_70_[PER]_Fld#_185_Plt#_1
CGGG_GGGG_GGGG_CCGGAC_GG
13._GC-04-053-3-17
GGTTAAAATTCCTTCCCGCGAAGTGGCT
 151617181920212223242526  
_Input profile
ACCGCCTTAAGGAGGGAAGGCCAAX_XX_X
1._GC-04-053-3-17
ACCGCCTTAAGGAGCCAAGGCCAAX_XX_X
2._PA_70_[PER]
ACCG__AA_AG_AA_CCAAX_XX_X
3._RUQ_33
ACCGCC_AAGGAGCCAAGGCCAAX_XX_X
4._PA_70_[PER]
ACCG__AA_AGCCAA_CCAAX_XX_X
5._RUQ_33
ACCG__AA_AGCCAA_CCAAX_XX_X
6._RUQ_33
ACCG____AG____AAX_XX_X
7._PA_70_[PER]
ACCC__AT_AGCGAA_CCAAX_XX_X
8._GC-04-53-3-17
ACCGGGAAAAGGAGGGAAGGGGAAX_XX_X
9._RUQ_33
ACCGGGAAAAGGAGGGAAGGGGAAX_XX_X
10._MITC-000025
ACCGGGAAAAGGAGGGAAGGGGAAX_XX_X
11._MITC-000026
ACCGGGAAAAGGAGGGAAGGGGAAX_XX_X
12._PA_70_[PER]_Fld#_185_Plt#_1
CCGGGGAGAAGGAGGGACGGAGAAX_XX_X
13._GC-04-053-3-17
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X

Input profile: PA_70_[PER] PA70[PER]

 
Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

1._PA_70_[PER] GC-04-053-3-17

84 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2 (verde)
 Mars, 2018

2._PA_70_[PER]

83.3 %
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D634
 Dapeng Zhang, 2016

3._PA_70_[PER] RUQ_33

80 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._PA_70_[PER]

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 6 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._PA_70_[PER] RUQ_33

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._PA_70_[PER] RUQ_33

71.4 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

7._PA_70_[PER]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._PA_70_[PER] GC-04-53-3-17

59.1 %
22 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 3, Rep: 17, Tree: 6 > FP2 (verde)
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

9._PA_70_[PER] RUQ_33

59.1 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

10._PA_70_[PER] MITC-000025

59.1 %
22 shared markers

USDA-SHRS, United States of America
 Mars, 2018

11._PA_70_[PER] MITC-000026

59.1 %
22 shared markers

USDA-SHRS, United States of America
 Mars, 2018

12._PA_70_[PER] PA_70_[PER]_Fld#_185_Plt#_1

50 %
22 shared markers

USDA-TARS, United States of America
Location: Field: 185, Tree: 1
 Mars, 2018

13._PA_70_[PER] GC-04-053-3-17

48.1 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144