SNP Profiles of MAN15/2[BRA]   View Data

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 Key

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_Input profile
CGCTTTAGCTCGCTCTGGCCAGGTAACT
1._RUQ_86
CG___CT_CTCT_GG____
2._MAN_15_/2_[BRA]
CG___CT_CTCT_GG____
3._MAN_15_/2_[BRA]
CG___CT__CT_GG____
4._RUQ_86
CGCTTTAGCT__TTCCGG___CT
5._GC-05-072-2-23
CGCTTTAGCTCGCTCTCCGGAAGTAACT
6._GC-05-072-2-23
CGCTTTAGCTCGCTCTCCGGAAGTAACT
7._GC-05-072-2-23
CGCTTTAGCTCGCTCTCCGGAAGTAACT
8._GC-05-072-2-23
CGCTTTAGCTCGCTCTCCGGAAGTAACT
9._GC-05-072-2-23
CGCTTTAGCTCGCTCTCCGGAAGTAACT
10._MAN_15_/2_[BRA]
CG___CT_CTCT_GG____
11._MAN_15_/2_[BRA]
CG___CT_CTCT_GG____
12._MAN_15_/2_[BRA]
CG___CT_CTCT_GG____
13._MAN_15_/2_[BRA]
CG___CT_CTCT_GG____
14._MAN_15_/2_[BRA]
CG___CT_CTCT_GG____
15._RUQ_86
CG________GG___CT
16._MAN_15_/2_[BRA]
GG___CC_TTCC_GG____
17._RUQ_86
CGAG_AGAG_AGAG_CCAGAC_AG
 151617181920212223242526  
_Input profile
ACCGCCCTAAGGAGCGACGGCTCCX_XX_X
1._RUQ_86
ACGG__AA_AGCGAC_CTCCX_XX_X
2._MAN_15_/2_[BRA]
ACGG__AA_AGCGAC_CTCCX_XX_X
3._MAN_15_/2_[BRA]
ACGG__AA_AGCGAC_CTCCX_XX_X
4._RUQ_86
ACCG-_AAGGAGCGACGGCTCCX_XX_X
5._GC-05-072-2-23
ACCGCGCTAAGGAACGAAGGCCCCX_XX_X
6._GC-05-072-2-23
ACCGCGCTAAGGAACGAAGGCCCCX_XX_X
7._GC-05-072-2-23
ACCGCGCTAAGGAACGAAGGCCCCX_XX_X
8._GC-05-072-2-23
ACCGCGCTAAGGAACGAAGGCCCCX_XX_X
9._GC-05-072-2-23
ACCGCGCTAAGGAACGAAGGCCCCX_XX_X
10._MAN_15_/2_[BRA]
ACCG__AA_AACGAA_CCCCX_XX_X
11._MAN_15_/2_[BRA]
ACCG__AA_AACGAA_CCCCX_XX_X
12._MAN_15_/2_[BRA]
ACCG__AA_AACGAA_CCCCX_XX_X
13._MAN_15_/2_[BRA]
ACCG__AA_AACGAA_CCCCX_XX_X
14._MAN_15_/2_[BRA]
ACCG__AA_AACGAA_CCCCX_XX_X
15._RUQ_86
ACGG____AG____CCX_XX_X
16._MAN_15_/2_[BRA]
AACG__AA_GGCGAC_CTCCX_XX_X
17._RUQ_86
ACCGCGAGAAGGAGCGACGGAGCCX_XX_X

Input profile: MAN_15_/2_[BRA] MAN15/2[BRA]

 
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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

1._MAN_15_/2_[BRA] RUQ_86

88.5 %
13 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
 Dapeng Zhang, 2016

2._MAN_15_/2_[BRA]

88.5 %
13 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: C0297
 Dapeng Zhang, 2016

3._MAN_15_/2_[BRA]

87.5 %
12 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/476 T2
 Dapeng Zhang, 2016

4._MAN_15_/2_[BRA] RUQ_86

86.8 %
19 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._MAN_15_/2_[BRA] GC-05-072-2-23

82.7 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

6._MAN_15_/2_[BRA] GC-05-072-2-23

82.7 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._MAN_15_/2_[BRA] GC-05-072-2-23

82.7 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

8._MAN_15_/2_[BRA] GC-05-072-2-23

82.7 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

9._MAN_15_/2_[BRA] GC-05-072-2-23

82.7 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._MAN_15_/2_[BRA]

80.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 5 > FP
 Dapeng Zhang, 2016

11._MAN_15_/2_[BRA]

80.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 3 > FP
 Dapeng Zhang, 2016

12._MAN_15_/2_[BRA]

80.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 2 > FP
 Dapeng Zhang, 2016

13._MAN_15_/2_[BRA]

80.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 1 > FP
 Dapeng Zhang, 2016

14._MAN_15_/2_[BRA]

80.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

15._MAN_15_/2_[BRA] RUQ_86

78.6 %
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

16._MAN_15_/2_[BRA]

69.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: La Montaña Lot 6 Row 53 46-48
 Dapeng Zhang, 2016

17._MAN_15_/2_[BRA] RUQ_86

61.4 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144