SNP Profiles of "POUND 5 /C"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-08-165-4-08
GGGGTTGGCCTTCCTTCCGGCCTTGGAA
2. _GC-08-165-4-08
GGGGTTGGCCTT___TTCCGGCCTTGGAA
3. _GC-08-165-4-08
GGGGTTGGCCTTCCTTCCGGCCTTGGAA
4. _GC-08-165-4-08
GGGGTTGGCCTTCCTTCCGGCCTTGGAA
5. _GC-01-118-6-15
GGCCTTGGGGAACCGGAAAAGGTTGGAA
6. _GC-01-118-6-15
GGCCTTGGGGAACCAACCCCGGAAGGAA
7. _8408_4
GG___TT_______________CCGGCC______AA
8. _8408_5
GG___TT_______________CCGGCC______AA
9. _8408_6
GG___TT_______________CCGGCC______AA
10. _8408_11
GG___TT_______________CCGGCC______AA
11. _6B_A77_T10
GG___TT_______________CCGGCC______AA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-08-165-4-08
CCAGGGCCAAGGGGAACTGGGG___CCAA
2. _GC-08-165-4-08
CCAGGGCCAAGGGGAACTGGGGAACCAA
3. _GC-08-165-4-08
CCAGGGCCAAGGGGAACTGGGGAACCAA
4. _GC-08-165-4-08
CCAGGGCCAAGGGGAACTGGGGAACCAA
5. _GC-01-118-6-15
GGAAGGGGTTGGGGAAAAGGGGTTGG___
6. _GC-01-118-6-15
GGAGGGGGTTGGGGAAAGGGGGAAGG___
7. _8408_4
CCAG___CC_________AA______GG______AA
8. _8408_5
CCAG___CC_________AA______GG______AA
9. _8408_6
CCAG___CC_________AA______GG______AA
10. _8408_11
CCAG___CC_________AA______GG______AA
11. _6B_A77_T10
___AG___CC_________AA______GG______AA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-08-165-4-08
___AACCCTAAGGGGGGAACCAACCAAAA
2. _GC-08-165-4-08
___AACCCTAAGGGGGGAACCAACCAAAA
3. _GC-08-165-4-08
___AACCCTAAGGGGGGAACCAACCAAAA
4. _GC-08-165-4-08
___AACCCTAAGGGGGGAACCAACCAAAA
5. _GC-01-118-6-15
AACCCC___GGAAAACCAAAA___AA___GG
6. _GC-01-118-6-15
AAAACC___AACCGGGGAAGG___GG___AA
7. _8408_4
______CCCT___GG___GGAA______CCAA___
8. _8408_5
______CCCT___GG___GGAA______CCAA___
9. _8408_6
______CCCT___GG___GGAA______CCAA___
10. _8408_11
______CCCT___GG___GGAA______CCAA___
11. _6B_A77_T10
______CCCT___GG___GGAA______CCAA___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-08-165-4-08
AATTCCGGGGTTGGTTCCGG___GGCCCC
2. _GC-08-165-4-08
AATTCCGGGGTTGGTTCCGG___GGCCCC
3. _GC-08-165-4-08
AATTCCGGGGTTGGTTCCGG___GGCCCC
4. _GC-08-165-4-08
AATTCCGGGGTTGGTTCCGG___GGCCCC
5. _GC-01-118-6-15
AA______CCGGAAAAAAAACCGGCC___GG
6. _GC-01-118-6-15
AA______CCGGAACCAACCCCGGCC___GG
7. _8408_4
_________GG_____________________GG___CC
8. _8408_5
_________GG_____________________GG___CC
9. _8408_6
_________GG_____________________GG___CC
10. _8408_11
_________GG_____________________GG___CC
11. _6B_A77_T10
_________GG_____________________GG___CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-08-165-4-08
CCGGCCGGCCAATTGGCCTTCCCCGGGG
2. _GC-08-165-4-08
CCGGCCGGCCAATTGGCCTTCCCCGGGG
3. _GC-08-165-4-08
CCGGCCGGCCAATTGGCCTTCCCCGGGG
4. _GC-08-165-4-08
CCGGCCGGCCAATTGGCCTTCCCCGGGG
5. _GC-01-118-6-15
GGAAAACCGGAAAAGG___AA___GGAACC
6. _GC-01-118-6-15
GGGGGGGGGGAAAAGG___AA___GGGGCC
7. _8408_4
______CCGG___AATTGG_________CCGG___
8. _8408_5
______CCGG___AATTGG_________CCGG___
9. _8408_6
______CCGG___AATTGG_________CCGG___
10. _8408_11
______CCGG___AATTGG_________CCGG___
11. _6B_A77_T10
______CCGG___AATTGG_________CCGG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-08-165-4-08
AACCGGTTCCTTTTCCGGCCTTTTTT___
2. _GC-08-165-4-08
AACCGGTTCCTTTTCCGGCCTTTTTT___
3. _GC-08-165-4-08
AACCGGTTCCTTTTCCGGCCTTTTTT___
4. _GC-08-165-4-08
AACCGGTTCCTTTTCCGGCCTTTTTT___
5. _GC-01-118-6-15
AAGGAA______AAGG___CC___AAGGAAAA
6. _GC-01-118-6-15
AAGGGG______AAAA___CC___AAAAAACC
7. _8408_4
AA_________CC______CC______TTTT______
8. _8408_5
AA_________CC______CC______TTTT______
9. _8408_6
AA_________CC______CC______TTTT______
10. _8408_11
AA_________CC______CC______TTTT______
11. _6B_A77_T10
AA__________________CC______TTTT___CC
 85 86 87 88 89 90 91 92 93 94 95 96   
1. _GC-08-165-4-08
GGTTCCTTGGAACCCCAAAAAAACX_XX_X
2. _GC-08-165-4-08
GGTTCCTTGGAACCCCAAAAAAACX_XX_X
3. _GC-08-165-4-08
GGTTCCTTGGAACCCCAAAAAAACX_XX_X
4. _GC-08-165-4-08
GGTTCCTTGGAACCCCAAAAAAACX_XX_X
5. _GC-01-118-6-15
GGAAAAGGCCGGAACC___AAAAAAX_XX_X
6. _GC-01-118-6-15
GGAAGGAACCAAGGCC___AAAAACX_XX_X
7. _8408_4
___TT___TTGGAACC_______________X_XX_X
8. _8408_5
___TT___TTGGAACC_______________X_XX_X
9. _8408_6
___TT___TTGGAACC_______________X_XX_X
10. _8408_11
___TT___TTGGAACC_______________X_XX_X
11. _6B_A77_T10
___TT___TTGGAACC_______________X_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._POUND_5_/C GC-08-165-4-08
Location: Tree: 4
Notes: 4
 Mars, 2018
2._POUND_5_/C GC-08-165-4-08
Location: Tree: 5
Notes: 5
 Mars, 2018
3._POUND_5_/C GC-08-165-4-08
Location: Tree: 6
Notes: 6
 Mars, 2018
4._POUND_5_/C GC-08-165-4-08
Location: Tree: 11
Notes: 11
 Mars, 2018
5._POUND_5_/C GC-01-118-6-15
Location: Field: 1, Block: 6, Rep: 15, Tree: 13
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018
6._POUND_5_/C GC-01-118-6-15
Location: Field: 1, Block: 6, Rep: 15, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018
7._POUND_5_/C
Location: 8408 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
8._POUND_5_/C
Location: 8408 5
 Dapeng Zhang, 2016
9._POUND_5_/C
Location: 8408 6
 Dapeng Zhang, 2016
10._POUND_5_/C
Location: 8408 11
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

11._POUND_5_/C
Location: 6B A77 T10
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133