SNP Profiles of "PA 70 [PER]"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-04-53-3-17
GGCCATGGGGAACCAAAACCGGATGGAA
2. _GC-04-053-3-17
GGGGATGGCTCTAACCAAGTCCAAAGAA
3. _4317_6_>_FP
GG___AT_______________AAGGCC______AA
4. _GC-04-053-3-17
GGGGATGGCCTTCCTTAAGGCCATGGAA
5. _4317_2_>_FP
GG___AT_______________AAGTCC______AA
6. _PA70[PER]
________________________AA___CC___GGAA
7. _RUQ_33
GG___AT_______________AAGGCC______AA
8. _RUQ_33
_______________TTCC___AAGGCC___GGAA
9. _RUQ_33
GGCCATGGGGAACCAAAACCGGATGGAA
10. _MARPER_D634
GG___AT_______________AAGGCC______AA
11. _MITC-000025
GGCCATGGGGAACCAAAACCGGATGGAA
12. _MITC-000026
GGCCATGGGGAACCAAAACCGGATGGAA
13. _PA_70_[PER]_Fld#_185_Plt#_1
GGCCATGGGGAACCAAAACCAGTTGGAC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-04-53-3-17
GGAGGGGGTTGGGGAAAAAGGGAAGG___
2. _GC-04-053-3-17
CGAGGGCTATAGAAATCTAGGGAACGAG
3. _4317_6_>_FP
CCAG___CC_________AA______GG______AA
4. _GC-04-053-3-17
CCAGGGCCAAGGGGAATTAGGGAACCAA
5. _4317_2_>_FP
CGAG___CT_________AT______GG______AG
6. _PA70[PER]
GGAG____________GGAATT_________CC___
7. _RUQ_33
CCAG___CC_________AA______GG______AA
8. _RUQ_33
CCAG___CC___GGGGAA____________CCAA
9. _RUQ_33
GGAGGGGGTTGGGGAAAAAGGGAAGG___
10. _MARPER_D634
___AG___CC_________AA______GG______AA
11. _MITC-000025
GGAGGGGGTTGGGGAAAAAGGGAAGG___
12. _MITC-000026
GGAGGGGGTTGGGGAAAAAGGGAAGG___
13. _PA_70_[PER]_Fld#_185_Plt#_1
GGAGGGGGTTGGGGAAAGAAGGAAGG___
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-04-53-3-17
GGCCAA___AGCCAGCGACAG___AA___AG
2. _GC-04-053-3-17
___CCCCTTGGTTAACCACCTGGTTGGAG
3. _4317_6_>_FP
______AATT___GG___CGAC______TTAG___
4. _GC-04-053-3-17
___CCAATTAGGGAGCGACCTAATTAGAA
5. _4317_2_>_FP
______CCTT___TT___CCAC______TTGG___
6. _PA70[PER]
_____________________CGACCTAA_________
7. _RUQ_33
______AATT___GG___CGAC______TTAA___
8. _RUQ_33
______AATT___GG___CGACCT___TT______
9. _RUQ_33
___CCAA___AGCCAGCGACAG___AA___AG
10. _MARPER_D634
______AATT___GG___CGAC______TTAA___
11. _MITC-000025
GGCCAA___AGCCAGCGACAG___AA___AG
12. _MITC-000026
GGCCAA___AGCCAGCGACAG___AA___AG
13. _PA_70_[PER]_Fld#_185_Plt#_1
GGCCAA___AA___AGGGCCGG___AA___AG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-04-53-3-17
AA______CCGGAACCAAAAGGGGCC___GG
2. _GC-04-053-3-17
AGCTCCGTGGGTGTGTACGGAACGCGCC
3. _4317_6_>_FP
_________GG_____________________GG___CC
4. _GC-04-053-3-17
AACCCCGGGGTTGGTTAACC___GGCCCC
5. _4317_2_>_FP
_________GT_____________________CG___CC
6. _PA70[PER]
_______________TT____________GGCCGGCC
7. _RUQ_33
_________GG_____________________GG___CC
8. _RUQ_33
______CCGGGG______TTAA______GGCCCC
9. _RUQ_33
AA______CCGGAACCAAAAGGGGCC___GG
10. _MARPER_D634
_________GG_____________________GG___CC
11. _MITC-000025
AA______CCGGAACCAAAAGGGGCC___GG
12. _MITC-000026
AA______CCGGAACCAAAAGGGGCC___GG
13. _PA_70_[PER]_Fld#_185_Plt#_1
AA______CCAGACCCAAAACCGGCC___GG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-04-53-3-17
GGGGAGCGGGAAGGAG___AA___GGAGCC
2. _GC-04-053-3-17
CCAATTGGTTAATTAGCTCTCCTTAAGT
3. _4317_6_>_FP
______CTCG___AACCAG_________CCAG___
4. _GC-04-053-3-17
CCGGCTCGCCAACCAGCTTTCCCCAGGG
5. _4317_2_>_FP
______TTGG___AATTAG_________TTAA___
6. _PA70[PER]
__________________CC_________CCCC______
7. _RUQ_33
______CTCG___AACCAG_________CCAG___
8. _RUQ_33
___GG_______________AGCC______CC___GG
9. _RUQ_33
GGGGAGCGGGAAGGAG___AA___GGAGCC
10. _MARPER_D634
______CTCG___AACCAG_________CCAG___
11. _MITC-000025
GGGGAGCGGGAAGGAG___AA___GGAGCC
12. _MITC-000026
GGGGAGCGGGAAGGAG___AA___GGAGCC
13. _PA_70_[PER]_Fld#_185_Plt#_1
GGGGGGCCGGAAGGAG___AA___GGGGCC
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-04-53-3-17
AAGGGG______AAAG___AC___AAGGAGAC
2. _GC-04-053-3-17
AACCAAAATTTTTTCTGGCCTTCCTTAA
3. _4317_6_>_FP
AA_________CC______CC______TTCC___AC
4. _GC-04-053-3-17
AACCGGTTCCTTCTCCGTCCTTCCTTAC
5. _4317_2_>_FP
AA_________TT______CT______TTCC___AA
6. _PA70[PER]
______GGTT______________________________
7. _RUQ_33
AA_________CC______CC______TTCC___AC
8. _RUQ_33
______GGTT__________________TT___CT___
9. _RUQ_33
AAGGGG______AAAG___AC___AAGGAGAC
10. _MARPER_D634
AA__________________CC______TTCC___AC
11. _MITC-000025
AAGGGG______AAAG___AC___AAGGAGAC
12. _MITC-000026
AAGGGG______AAAG___AC___AAGGAGAC
13. _PA_70_[PER]_Fld#_185_Plt#_1
AAGGGG______AAAG___AC___AAAGAGCC
 85 86 87 88 89 90 91 92 93 94 95 96   
1. _GC-04-53-3-17
GGAAGGAGCCAGGGAA___CCAGACX_XX_X
2. _GC-04-053-3-17
GGTTTTCTGGAATTCCAAACGGAAX_XX_X
3. _4317_6_>_FP
___TT___CTGGAGCC_______________X_XX_X
4. _GC-04-053-3-17
GGTTCCCTGGAGCCAAAGCCAGACX_XX_X
5. _4317_2_>_FP
___TT___CTGGAATT_______________X_XX_X
6. _PA70[PER]
______CC___CC_____________________X_XX_X
7. _RUQ_33
___TT___CTGGAGCC_______________X_XX_X
8. _RUQ_33
______CCCTGGAG__________________X_XX_X
9. _RUQ_33
GGAAGGAGCCAGGGAA___CCAGACX_XX_X
10. _MARPER_D634
___TT___CTGGAGCC_______________X_XX_X
11. _MITC-000025
GGAAGGAGCCAGGGAA___CCAGACX_XX_X
12. _MITC-000026
GGAAGGAGCCAGGGAA___CCAGACX_XX_X
13. _PA_70_[PER]_Fld#_185_Plt#_1
GGAAGGAGCGAGAGAC___ACAGACX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._PA_70_[PER] GC-04-53-3-17
Location: Field: 4, Block: 3, Rep: 17, Tree: 6 > FP2 (verde)
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018
2._PA_70_[PER] GC-04-053-3-17
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018
3._PA_70_[PER]
Location: 4317 6 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
4._PA_70_[PER] GC-04-053-3-17
Location: Tree: 6
Notes: 6 > FP2 (verde)
 Mars, 2018
5._PA_70_[PER]
Location: 4317 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

Center for Forestry Research and Technology Transfer Vietnam

6._PA_70_[PER]
 Jocelyn De Wever et al., 2019

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

7._PA_70_[PER] RUQ 33
 Dapeng Zhang, 2016
8._PA_70_[PER] RUQ 33
 Dapeng Zhang, 2014
9._PA_70_[PER] RUQ 33
Notes: Reading_Collection
 Mars, 2018

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

10._PA_70_[PER]
Location: MARPER D634
 Dapeng Zhang, 2016

USDA-SHRS United States of America

11._PA_70_[PER] MITC-000025
 Mars, 2018
12._PA_70_[PER] MITC-000026
 Mars, 2018

USDA-TARS United States of America

13._PA_70_[PER] PA 70 [PER]_Fld#_185_Plt#_1
Location: Field: 185, Tree: 1
 Mars, 2018

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133