SNP Profiles of "AMAZ 12 /4"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-01-086-5-03
GGGGTTGGCCCTCCTTACTTCTTTGGAA
2. _GC-01-086-5-03
GGGGTTGGCCCTCCTTACTTCTTTGGAA
3. _GC-01-086-5-03
GGGGTTGGCCCTCCTTACTTCTTTGGAA
4. _GC-01-086-5-03
GGGGTTGGCCCTCCTTAC___CTTTGGAA
5. _1503_7
GG___TT_______________ACTTCT______AA
6. _1503_9
GG___TT_______________AC___CT______AA
7. _1503_2_>_FP
GG___TT_______________ACTTCT______AA
8. _1503_5_>_FP
GG___TT_______________ACTTCT______AA
9. _6B_B95_T3
GG___AT_______________ACGTCC______AC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-01-086-5-03
CGAAGGTTATAGGGAACCAGGGATCCAA
2. _GC-01-086-5-03
CGAAGGTTATAGGGAACCAGGGATCCAA
3. _GC-01-086-5-03
CGAAGGTTATAGGGAACCAGGGATCCAA
4. _GC-01-086-5-03
CGAAGGTTATAGGGAACCAGGGATCCAA
5. _1503_7
CGAA___TT_________AA______GG______AA
6. _1503_9
CGAA___TT_________AA______GG______AA
7. _1503_2_>_FP
CGAA___TT_________AA______GG______AA
8. _1503_5_>_FP
CGAA___TT_________AA______GG______AA
9. _6B_B95_T3
CGGG___CC_________AT______GG______AA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-01-086-5-03
AACCCCAAGGAGGGACCTAGCCAAAAAA
2. _GC-01-086-5-03
AACCCCAAGG___GGACCTAGCCAAAAAA
3. _GC-01-086-5-03
AACCCCAAGGAGGGACCTAGCCAAAAAA
4. _GC-01-086-5-03
AACCCCAAGGAGGGACCTAGCCAAAAAA
5. _1503_7
___CCCC___GG___GGAC______CCAA______
6. _1503_9
___CCCC___GG___GGAC______CCAA______
7. _1503_2_>_FP
___CCCC___GG___GGAC______CCAA______
8. _1503_5_>_FP
___CCCC___GG___GGAC______CCAA______
9. _6B_B95_T3
___CCCC___GT___GGAA______CTAA______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-01-086-5-03
TTCTGGAGTTTTTTACGGCGCCCTGGAG
2. _GC-01-086-5-03
TTCTGGAGTTTTTTACGGCGCCCTGGAG
3. _GC-01-086-5-03
TTCTGGAGTTTTTTACGGCGCCCTGGAG
4. _GC-01-086-5-03
TTCTGGAGTTTTTTACGGCGCCCTGGAG
5. _1503_7
______GG__________________CG___CT______
6. _1503_9
______GG__________________CG___CT______
7. _1503_2_>_FP
______GG__________________CG___CT______
8. _1503_5_>_FP
______GG__________________CG___CT______
9. _6B_B95_T3
______GG__________________CG___CT______
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-01-086-5-03
CTGGCCATTTAATTTTCGCTGGGGAACC
2. _GC-01-086-5-03
CTGGCCATTTAATTTTCGCTGGGGAACC
3. _GC-01-086-5-03
CTGGCCATTTAATTTTCGCTGGGGAACC
4. _GC-01-086-5-03
CTGGCCATTTAATTTTCGCTGGGGAACC
5. _1503_7
CTGG___ATTTAA_________CTGG___AA___
6. _1503_9
CTGG___ATTTAA_________CTGG___AA___
7. _1503_2_>_FP
CTGG___ATTTAA_________CTGG___AA___
8. _1503_5_>_FP
CTGG___ATTTAA_________CTGG___AA___
9. _6B_B95_T3
TTGG___ATCTAG_________CTGG___AA___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-01-086-5-03
GGTTCCTTCTTTGGACTTTTTTACGGTT
2. _GC-01-086-5-03
GGTTCCTTCTTTGGACTTTTTTACGGTT
3. _GC-01-086-5-03
GGTTCCTT___TTGGACTTTTTTACGGTT
4. _GC-01-086-5-03
GGTTCCTTCTTTGGACTTTTTTACGGTT
5. _1503_7
______CC______TT______TTTT___AC___TT
6. _1503_9
______CC______TT______TTTT___AC___TT
7. _1503_2_>_FP
______CC______TT______TTTT___AC___TT
8. _1503_5_>_FP
______CC______TT______TTTT___AC___TT
9. _6B_B95_T3
______TT______CC______TTTT___AC___CT
 85 86 87 88 89 90 91 92 93 94     
1. _GC-01-086-5-03
CCTTCCGGCCACAAACAACCX_XX_XX_XX_X
2. _GC-01-086-5-03
CCTTCCGGCCACAAACAACCX_XX_XX_XX_X
3. _GC-01-086-5-03
CCTTCCGGCCACAAACAACCX_XX_XX_XX_X
4. _GC-01-086-5-03
CCTTCCGGCCACAAACAACCX_XX_XX_XX_X
5. _1503_7
___TTCCGGCC_______________X_XX_XX_XX_X
6. _1503_9
___TTCCGGCC_______________X_XX_XX_XX_X
7. _1503_2_>_FP
___TTCCGGCC_______________X_XX_XX_XX_X
8. _1503_5_>_FP
___TTCCGGCC_______________X_XX_XX_XX_X
9. _6B_B95_T3
___TTGGAACC_______________X_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._AMAZ_12_/4 GC-01-086-5-03
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018
2._AMAZ_12_/4 GC-01-086-5-03
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018
3._AMAZ_12_/4 GC-01-086-5-03
Location: Tree: 7
Notes: 7
 Mars, 2018
4._AMAZ_12_/4 GC-01-086-5-03
Location: Tree: 9
Notes: 9
 Mars, 2018
5._AMAZ_12_/4
Location: 1503 7
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
6._AMAZ_12_/4
Location: 1503 9
 Dapeng Zhang, 2016
7._AMAZ_12_/4
Location: 1503 2 > FP
 Dapeng Zhang, 2016
8._AMAZ_12_/4
Location: 1503 5 > FP
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

9._AMAZ_12_/4
Location: 6B B95 T3
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP521 30TcSNP529
31TcSNP534 32TcSNP547 33TcSNP560 34TcSNP561 35TcSNP577
36TcSNP591 37TcSNP602 38TcSNP606 39TcSNP619 40TcSNP645
41TcSNP653 42TcSNP689 43TcSNP701 44TcSNP702 45TcSNP723
46TcSNP731 47TcSNP751 48TcSNP776 49TcSNP799 50TcSNP823
51TcSNP836 52TcSNP872 53TcSNP878 54TcSNP891 55TcSNP894
56TcSNP899 57TcSNP917 58TcSNP929 59TcSNP944 60TcSNP953
61TcSNP994 62TcSNP998 63TcSNP999 64TcSNP1034 65TcSNP1041
66TcSNP1060 67TcSNP1062 68TcSNP1063 69TcSNP1075 70TcSNP1096
71TcSNP1111 72TcSNP1126 73TcSNP1144 74TcSNP1149 75TcSNP1156
76TcSNP1165 77TcSNP1175 78TcSNP1242 79TcSNP1253 80TcSNP1270
81TcSNP1309 82TcSNP1350 83TcSNP1383 84TcSNP1414 85TcSNP1439
86TcSNP1442 87TcSNP1458 88TcSNP1484 89TcSNP1520 90Tcm001s00947643
91Tcm002s20575712 92Tcm003s01336581 93Tcm003s07402719 94Tcm006s26664133