SNP Profiles of "ICS 39" View Data

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
1. _GC-01-85-5-02	GG	GG	AT	AG	CT	CT	AC	CT	AC	GT	CT	CC	AG	AC
2. _GC-01-85-5-02	GG	GG	AT	AG	CT	CT	AC	CT	AC	GT	CT	CC	AG	___
3. _GC-01-85-5-02	GG	GG	AT	AG	CT	CT	AC	CT	AC	GT	CT	CC	AG	AC
4. _GC-01-85-5-02	GG	GG	AT	AG	CT	CT	AC	CT	AC	GT	CT	CC	AG	AC
5. _GC-01-085-5-02	GG	GG	AT	AG	CT	CT	AC	CT	AC	GT	CT	AT	AG	AC
6. _GC-01-085-5-02	GG	GG	AT	AG	CT	CT	AC	CT	AC	GT	CT	AT	AG	AC
7. _GC-01-085-5-02	GG	GG	AT	AG	CT	CT	AC	CT	AC	GT	CT	AT	AG	AC
8. _1502_9	GG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	AC
9. _1502_12	GG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	AC
10. _1502_16	GG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	AC
11. _1502_PL14_F	GG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	AC
12. _1502_PL15_F	GG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	AC
13. _1502_PL5_FP	GG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	AC
14. _1502_PL8_FP	GG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	___
15. _RUQ_1089	GG	CC	TT	GG	GG	AA	CC	AA	AC	CC	AG	AA	GG	AC
16. _RUQ_1089	GG	___	TT	___	___	___	___	___	AC	GG	CT	___	___	AC
17. _Row_9_C0200_2A	GG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	AC
18. _6B_E361_T3	GG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	AC
19. _ICS_39_Fld#_30_Plt#_2	GG	CC	AT	AG	AG	AG	AC	AG	AC	AC	AG	AT	AG	AC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
1. _GC-01-85-5-02	CG	AG	CC	CT	AT	AG	AG	AT	CT	AG	GG	AT	CG	AG
2. _GC-01-85-5-02	CG	AG	CC	CT	AT	AG	AG	AT	CT	AG	GG	AT	CG	AG
3. _GC-01-85-5-02	CG	AG	CC	CT	AT	AG	AG	AT	CT	AG	GG	AT	CG	AG
4. _GC-01-85-5-02	CG	AG	CC	CT	AT	AG	AG	AT	CT	AG	GG	AT	CG	AG
5. _GC-01-085-5-02	CG	AG	GG	CT	AT	AG	AG	AT	CT	AG	GG	AT	CG	AG
6. _GC-01-085-5-02	CG	AG	GG	CT	AT	AG	AG	AT	CT	AG	GG	AT	CG	AG
7. _GC-01-085-5-02	CG	AG	GG	CT	AT	AG	AG	AT	CT	AG	GG	AT	CG	AG
8. _1502_9	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
9. _1502_12	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
10. _1502_16	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
11. _1502_PL14_F	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
12. _1502_PL15_F	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
13. _1502_PL5_FP	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
14. _1502_PL8_FP	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
15. _RUQ_1089	GG	AG	GG	AG	TT	GG	GG	AT	AA	GG	GG	AA	GG	___
16. _RUQ_1089	CC	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AA
17. _Row_9_C0200_2A	CG	AG	___	CT	___	___	___	AT	___	___	GG	___	___	AG
18. _6B_E361_T3	GG	AG	___	CT	___	___	___	AT	___	___	AG	___	___	AG
19. _ICS_39_Fld#_30_Plt#_2	CG	AG	GG	AG	AT	AG	AG	AT	AG	AG	GG	AT	CG	___

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
1. _GC-01-85-5-02	CT	CC	CC	CT	GG	GT	AA	CC	AC	CC	AG	CT	GG	AG
2. _GC-01-85-5-02	CT	CC	CC	CT	GG	GT	AA	CC	AC	CC	AG	CT	GG	AG
3. _GC-01-85-5-02	CT	CC	CC	CT	GG	GT	AA	CC	AC	CC	AG	CT	GG	AG
4. _GC-01-85-5-02	CT	CC	CC	CT	GG	GT	AA	CC	AC	CC	AG	CT	GG	AG
5. _GC-01-085-5-02	___	CC	CC	CT	GG	GT	AA	CC	AC	CC	AG	CT	GG	AG
6. _GC-01-085-5-02	___	CC	CC	CT	GG	GT	AA	CC	AC	CC	AG	CT	GG	AG
7. _GC-01-085-5-02	___	CC	CC	CT	GG	GT	AA	CC	AC	CC	AG	CT	GG	AG
8. _1502_9	___	___	CC	CT	___	GT	___	CC	AC	___	___	CT	GG	___
9. _1502_12	___	___	CC	CT	___	GT	___	CC	AC	___	___	CT	GG	___
10. _1502_16	___	___	CC	CT	___	GT	___	CC	AC	___	___	CT	GG	___
11. _1502_PL14_F	___	___	CC	CT	___	GT	___	CC	AC	___	___	CT	GG	___
12. _1502_PL15_F	___	___	CC	CT	___	GT	___	CC	AC	___	___	CT	GG	___
13. _1502_PL5_FP	___	___	CC	CT	___	GT	___	CC	AC	___	___	CT	GG	___
14. _1502_PL8_FP	___	___	CC	CT	___	GT	___	CC	AC	___	___	CT	GG	___
15. _RUQ_1089	AA	AA	CC	___	AA	AC	GG	GG	AA	GG	___	GG	___	AA
16. _RUQ_1089	___	___	CC	CC	___	GT	___	GG	AA	___	___	CC	AA	___
17. _Row_9_C0200_2A	___	___	CC	CT	___	GT	___	CC	AC	___	___	CT	AG	___
18. _6B_E361_T3	___	___	CC	CT	___	GT	___	CC	AC	___	___	CT	AG	___
19. _ICS_39_Fld#_30_Plt#_2	AG	CC	CC	___	GG	AC	AA	CG	AC	GG	___	AG	___	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
1. _GC-01-85-5-02	AG	CT	CT	GT	AG	GT	GT	GT	CC	GG	AA	CG	CG	CC
2. _GC-01-85-5-02	AG	CT	CT	GT	AG	GT	GT	GT	CC	GG	AA	CG	CG	CC
3. _GC-01-85-5-02	___	CT	CT	GT	AG	GT	GT	GT	CC	GG	AA	CG	CG	CC
4. _GC-01-85-5-02	AG	CT	___	GT	AG	GT	GT	GT	CC	GG	AA	CG	CG	CC
5. _GC-01-085-5-02	AG	CT	CT	GT	AG	GT	GT	GT	CC	GG	AA	CG	CG	CC
6. _GC-01-085-5-02	AG	CT	CT	GT	AG	GT	GT	GT	CC	GG	AA	CG	CG	CC
7. _GC-01-085-5-02	AG	CT	CT	GT	AG	GT	GT	GT	CC	GG	AA	CG	CG	CC
8. _1502_9	___	___	___	GT	___	___	___	___	___	___	___	CG	___	CC
9. _1502_12	___	___	___	GT	___	___	___	___	___	___	___	CG	___	CC
10. _1502_16	___	___	___	GT	___	___	___	___	___	___	___	CG	___	CC
11. _1502_PL14_F	___	___	___	GT	___	___	___	___	___	___	___	CG	___	CC
12. _1502_PL15_F	___	___	___	GT	___	___	___	___	___	___	___	CG	___	CC
13. _1502_PL5_FP	___	___	___	GT	___	___	___	___	___	___	___	CG	___	CC
14. _1502_PL8_FP	___	___	___	GT	___	___	___	___	___	___	___	CG	___	CC
15. _RUQ_1089	AA	___	___	CC	GG	AA	AC	AA	AC	CC	GG	GG	___	GG
16. _RUQ_1089	___	___	___	GG	___	___	___	___	___	___	___	CC	___	CC
17. _Row_9_C0200_2A	___	___	___	GT	___	___	___	___	___	___	___	CG	___	CC
18. _6B_E361_T3	___	___	___	GT	___	___	___	___	___	___	___	CG	___	CC
19. _ICS_39_Fld#_30_Plt#_2	AG	___	___	AA	AG	AC	CC	AC	AC	CC	AG	CG	___	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
1. _GC-01-85-5-02	CC	GG	TT	GG	___	AA	CT	AA	CT	CT	CC	CT	AA	GT
2. _GC-01-85-5-02	CC	GG	TT	GG	CT	AA	CT	AA	CT	CT	CC	CT	AA	GT
3. _GC-01-85-5-02	CC	GG	TT	GG	CT	AA	CT	AA	CT	CT	CC	CT	AA	GT
4. _GC-01-85-5-02	CC	GG	TT	GG	CT	AA	CT	AA	CT	CT	CC	CT	AA	GT
5. _GC-01-085-5-02	CC	GG	TT	GG	CT	AA	CT	AA	CT	CT	CC	CT	AA	GT
6. _GC-01-085-5-02	CC	GG	TT	GG	CT	AA	CT	AA	CT	CT	CC	CT	AA	GT
7. _GC-01-085-5-02	CC	GG	TT	GG	CT	AA	CT	AA	CT	CT	CC	CT	AA	GT
8. _1502_9	___	___	TT	GG	___	AA	CT	AA	___	___	___	CT	AA	___
9. _1502_12	___	___	TT	GG	___	AA	CT	AA	___	___	___	CT	AA	___
10. _1502_16	___	___	TT	GG	___	AA	CT	AA	___	___	___	CT	AA	___
11. _1502_PL14_F	___	___	TT	GG	___	AA	CT	AA	___	___	___	CT	AA	___
12. _1502_PL15_F	___	___	TT	GG	___	AA	CT	AA	___	___	___	CT	AA	___
13. _1502_PL5_FP	___	___	TT	GG	___	AA	CT	AA	___	___	___	CT	AA	___
14. _1502_PL8_FP	___	___	TT	GG	___	AA	CT	AA	___	___	___	CT	AA	___
15. _RUQ_1089	GG	GG	AG	GG	GG	AT	AA	AG	___	AA	___	AG	AG	CC
16. _RUQ_1089	___	___	CT	GG	___	AT	TT	AG	___	___	___	CT	AG	___
17. _Row_9_C0200_2A	___	___	TT	GG	___	AA	CT	AA	___	___	___	CT	AA	___
18. _6B_E361_T3	___	___	TT	GG	___	AA	CT	AA	___	___	___	CT	AA	___
19. _ICS_39_Fld#_30_Plt#_2	GG	GG	AA	GG	AG	AA	AG	AA	___	AG	___	AG	AA	AC

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
1. _GC-01-85-5-02	AA	CC	AG	AT	CT	TT	TT	CT	GT	CC	GT	CC	TT	AA
2. _GC-01-85-5-02	AA	CC	AG	AT	CT	TT	TT	CT	GT	CC	GT	CC	TT	AA
3. _GC-01-85-5-02	AA	CC	AG	AT	CT	TT	TT	CT	GT	CC	GT	CC	TT	AA
4. _GC-01-85-5-02	AA	CC	AG	AT	CT	TT	TT	CT	GT	CC	GT	CC	TT	AA
5. _GC-01-085-5-02	AA	CC	AG	AT	CT	TT	TT	CT	GT	CC	GT	CC	TT	AA
6. _GC-01-085-5-02	AA	CC	AG	AT	CT	TT	TT	CT	GT	CC	GT	CC	TT	AA
7. _GC-01-085-5-02	AA	CC	AG	AT	CT	TT	TT	CT	GT	CC	GT	CC	TT	AA
8. _1502_9	AA	___	___	___	CT	___	___	CT	___	___	GT	CC	___	AA
9. _1502_12	AA	___	___	___	CT	___	___	CT	___	___	GT	CC	___	AA
10. _1502_16	AA	___	___	___	CT	___	___	CT	___	___	GT	CC	___	AA
11. _1502_PL14_F	AA	___	___	___	CT	___	___	CT	___	___	GT	CC	___	AA
12. _1502_PL15_F	AA	___	___	___	CT	___	___	CT	___	___	GT	CC	___	AA
13. _1502_PL5_FP	AA	___	___	___	CT	___	___	CT	___	___	GT	CC	___	AA
14. _1502_PL8_FP	AA	___	___	___	CT	___	___	CT	___	___	GT	CC	___	AA
15. _RUQ_1089	AA	GG	GG	___	___	AA	AA	___	CC	___	AA	AA	AA	___
16. _RUQ_1089	AA	___	___	___	CC	___	___	CC	___	___	TT	TT	___	AC
17. _Row_9_C0200_2A	AA	___	___	___	CT	___	___	CT	___	___	GT	CC	___	AA
18. _6B_E361_T3	AA	___	___	___	CT	___	___	CT	___	___	GT	CC	___	AA
19. _ICS_39_Fld#_30_Plt#_2	AA	GG	AG	___	___	AA	AA	___	AC	___	AA	GG	AG	AA

	85	86	87	88	89	90	91	92	93	94	95	96
1. _GC-01-85-5-02	GG	TT	CT	CT	CG	AG	CT	AC	AG	CC	AG	AA	X_X	X_X
2. _GC-01-85-5-02	GG	TT	CT	CT	CG	AG	CT	AC	AG	CC	AG	AA	X_X	X_X
3. _GC-01-85-5-02	GG	TT	CT	CT	CG	AG	CT	AC	AG	CC	AG	AA	X_X	X_X
4. _GC-01-85-5-02	GG	TT	CT	CT	CG	AG	CT	AC	AG	CC	AG	AA	X_X	X_X
5. _GC-01-085-5-02	GG	TT	CT	CT	CG	AG	CT	AC	AG	CC	AG	AA	X_X	X_X
6. _GC-01-085-5-02	GG	TT	CT	CT	CG	AG	CT	AC	AG	CC	AG	AA	X_X	X_X
7. _GC-01-085-5-02	GG	TT	CT	CT	CG	AG	CT	AC	AG	CC	AG	AA	X_X	X_X
8. _1502_9	___	TT	___	CT	CG	AG	CT	___	___	___	___	___	X_X	X_X
9. _1502_12	___	TT	___	CT	CG	AG	CT	___	___	___	___	___	X_X	X_X
10. _1502_16	___	TT	___	CT	CG	AG	CT	___	___	___	___	___	X_X	X_X
11. _1502_PL14_F	___	TT	___	CT	CG	AG	CT	___	___	___	___	___	X_X	X_X
12. _1502_PL15_F	___	TT	___	CT	CG	AG	CT	___	___	___	___	___	X_X	X_X
13. _1502_PL5_FP	___	TT	___	CT	CG	AG	CT	___	___	___	___	___	X_X	X_X
14. _1502_PL8_FP	___	TT	___	CT	CG	AG	CT	___	___	___	___	___	X_X	X_X
15. _RUQ_1089	GG	AA	GG	AA	GG	AA	GG	CC	___	AC	AA	AC	X_X	X_X
16. _RUQ_1089	___	TT	___	TT	CC	AG	CC	___	___	___	___	___	X_X	X_X
17. _Row_9_C0200_2A	___	TT	___	CT	GG	AG	CT	___	___	___	___	___	X_X	X_X
18. _6B_E361_T3	___	TT	___	CT	GG	AG	CT	___	___	___	___	___	X_X	X_X
19. _ICS_39_Fld#_30_Plt#_2	GG	AA	AG	AG	CC	AG	AG	AC	___	AC	AG	AA	X_X	X_X

Mars Center for Cocoa Science Brazil

1._ICS_39 GC-01-85-5-02

Location: Field: 1, Block: 5, Rep: 2, Tree: PL5

Notes: PL5 FP2

2._ICS_39 GC-01-85-5-02

Location: Field: 1, Block: 5, Rep: 2, Tree: PL8

Notes: PL8 FP1

3._ICS_39 GC-01-85-5-02

Location: Field: 1, Block: 5, Rep: 2, Tree: PL14

Notes: PL14 FP3

4._ICS_39 GC-01-85-5-02

Location: Field: 1, Block: 5, Rep: 2, Tree: PL15

Notes: PL15 FP4

5._ICS_39 GC-01-085-5-02

Location: Tree: 9

Notes: 9

6._ICS_39 GC-01-085-5-02

Location: Tree: 12

Notes: 12

7._ICS_39 GC-01-085-5-02

Location: Tree: 16

Notes: 16

8._ICS_39

Location: 1502 9

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._ICS_39

Location: 1502 12

Dapeng Zhang, 2016

10._ICS_39

Location: 1502 16

Dapeng Zhang, 2016

11._ICS_39

Location: 1502 PL14 F

Dapeng Zhang, 2016

12._ICS_39

Location: 1502 PL15 F

Dapeng Zhang, 2016

13._ICS_39

Location: 1502 PL5 FP

Dapeng Zhang, 2016

14._ICS_39

Location: 1502 PL8 FP

Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

15._ICS_39 RUQ 1089

Notes: Reading_Collection

16._ICS_39 RUQ 1089

Dapeng Zhang, 2016

Malaysian Cocoa Board (MCB) Malaysia

17._ICS_39

Location: Row 9 C0200 2A

Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

18._ICS_39

Location: 6B E361 T3

Dapeng Zhang, 2016

USDA-TARS United States of America

19._ICS_39 ICS 39_Fld#_30_Plt#_2

Location: Field: 30, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP28	3	TcSNP32	4	TcSNP42	5	TcSNP60
6	TcSNP75	7	TcSNP90	8	TcSNP122	9	TcSNP144	10	TcSNP150
11	TcSNP151	12	TcSNP154	13	TcSNP174	14	TcSNP193	15	TcSNP226
16	TcSNP230	17	TcSNP240	18	TcSNP242	19	TcSNP316	20	TcSNP329
21	TcSNP364	22	TcSNP372	23	TcSNP413	24	TcSNP418	25	TcSNP429
26	TcSNP430	27	TcSNP448	28	TcSNP469	29	TcSNP497	30	TcSNP521
31	TcSNP529	32	TcSNP534	33	TcSNP547	34	TcSNP560	35	TcSNP561
36	TcSNP577	37	TcSNP591	38	TcSNP602	39	TcSNP606	40	TcSNP619
41	TcSNP645	42	TcSNP653	43	TcSNP689	44	TcSNP701	45	TcSNP702
46	TcSNP723	47	TcSNP731	48	TcSNP751	49	TcSNP776	50	TcSNP799
51	TcSNP823	52	TcSNP836	53	TcSNP860	54	TcSNP872	55	TcSNP878
56	TcSNP891	57	TcSNP894	58	TcSNP899	59	TcSNP917	60	TcSNP929
61	TcSNP944	62	TcSNP953	63	TcSNP994	64	TcSNP998	65	TcSNP999
66	TcSNP1034	67	TcSNP1041	68	TcSNP1060	69	TcSNP1062	70	TcSNP1063
71	TcSNP1075	72	TcSNP1096	73	TcSNP1111	74	TcSNP1126	75	TcSNP1144
76	TcSNP1149	77	TcSNP1156	78	TcSNP1165	79	TcSNP1175	80	TcSNP1242
81	TcSNP1253	82	TcSNP1270	83	TcSNP1309	84	TcSNP1350	85	TcSNP1383
86	TcSNP1414	87	TcSNP1439	88	TcSNP1442	89	TcSNP1458	90	TcSNP1484
91	TcSNP1520	92	Tcm001s00947643	93	Tcm002s20575712	94	Tcm003s01336581	95	Tcm003s07402719
96	Tcm006s26664133