SNP Profiles of "ICS 16"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-08-067-1-89
GGGGAAGGCCTTCCTTACGGCCAAGGAA
2. _GC-08-067-1-89
GGGGAAGGCCTTCCTTACGGCCAAGGAA
3. _GC-08-067-1-89
GGGGAAGGCCTTCCTTACGGCCAAGGAA
4. _GC-08-067-1-89
GGGGAAGGCCTTCCTTACGGCCAAGGAA
5. _GC-08-067-1-89
GGGGAAGGCCTTCCTTACGGCCAAGGAA
6. _GC-08-067-1-89
GGGGAAGGCCTTCCTTACGGCCAAGGAA
7. _GC-08-067-1-89
GGGGAAGGCCTTCCTTACGGCCAAGGAA
8. _GC-08-067-1-89
GGGGAAGGCCTTCCTTACGGCCAAGGAA
9. _GC-08-067-1-89
GGGGAAGGCCTTCCTTACGGCCAAGGAA
10. _GC-08-067-1-89
GGGGAAGGCCTTCCTTACGGCCAAGGAA
11. _8189_2
GG___AA_______________ACGGCC______AA
12. _8189_6
GG___AA_______________ACGGCC______AA
13. _8189_7
GG___AA_______________ACGGCC______AA
14. _8189_8
GG___AA_______________ACGGCC______AA
15. _8189_10
GG___AA_______________ACGGCC______AA
16. _8189_12
GG___AA_______________ACGGCC______AA
17. _8189_1_>_FP
GG___AA_______________ACGGCC______AA
18. _8189_3_>_FP
GG___AA_______________ACGGCC______AA
19. _8189_5_>_FP
GG___AA_______________ACGGCC______AA
20. _8189_9_>_FP
GG___AA_______________ACGGCC______AA
21. _Row_1_C0199_2A
GG___AT_______________ACGTCC______AC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-08-067-1-89
CCGGGGCCAAGGGGAATTGGGGAACCAG
2. _GC-08-067-1-89
CCGGGGCCAAGGGGAATTGGGGAACCAG
3. _GC-08-067-1-89
CCGGGGCCAAGGGGAATTGGGGAACCAG
4. _GC-08-067-1-89
CCGGGGCCAAGGGGAATTGGGGAACCAG
5. _GC-08-067-1-89
CCGGGGCCAAGGGGAATTGGGGAACCAG
6. _GC-08-067-1-89
CCGGGGCCAAGGGGAATTGGGGAACCAG
7. _GC-08-067-1-89
CCGGGGCCAAGGGGAATTGGGGAACCAG
8. _GC-08-067-1-89
CCGGGG___AAGGGGAATTGGGGAACCAG
9. _GC-08-067-1-89
CCGGGGCCAAGGGGAATTGGGGAACCAG
10. _GC-08-067-1-89
CCGGGGCCAAGGGGAATTGGGGAACCAG
11. _8189_2
CCGG___CC_________AA______GG______AG
12. _8189_6
CCGG___CC_________AA______GG______AG
13. _8189_7
CCGG___CC_________AA______GG______AG
14. _8189_8
CCGG___CC_________AA______GG______AG
15. _8189_10
CCGG___CC_________AA______GG______AG
16. _8189_12
CCGG___CC_________AA______GG______AG
17. _8189_1_>_FP
CCGG___CC_________AA______GG______AG
18. _8189_3_>_FP
CCGG___CC_________AA______GG______AG
19. _8189_5_>_FP
CCGG___CC_________AA______GG______AG
20. _8189_9_>_FP
CCGG_______________AA______GG______AG
21. _Row_1_C0199_2A
CCAG___CC_________TT______GG______AG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-08-067-1-89
CCAACTAGTTGGGGACCTAACTAGAAAA
2. _GC-08-067-1-89
CCAACTAGTTGGGGACCTAACTAGAAAA
3. _GC-08-067-1-89
CCAACTAGTTGGGGACCTAACTAGAAAA
4. _GC-08-067-1-89
CCAACTAGTTGGGGACCTAACTAGAAAA
5. _GC-08-067-1-89
CCAACTAGTTGGGGACCTAACTAGAAAA
6. _GC-08-067-1-89
CCAACTAGTTGGGGACCTAACTAGAAAA
7. _GC-08-067-1-89
CCAACTAGTTGGGGACCTAACTAGAAAA
8. _GC-08-067-1-89
CCAACTAGTTGGGGACCTAACTAGAAAA
9. _GC-08-067-1-89
CCAACTAGTTGGGGACCTAACTAGAAAA
10. _GC-08-067-1-89
CCAACTAGTTGGGGACCTAACTAGAAAA
11. _8189_2
___AACT___TT___GGAC______CTAG______
12. _8189_6
___AACT___TT___GGAC______CTAG______
13. _8189_7
___AACT___TT___GGAC______CTAG______
14. _8189_8
___AACT___TT___GGAC______CTAG______
15. _8189_10
___AACT___TT___GGAC______CTAG______
16. _8189_12
___AACT___TT___GGAC______CTAG______
17. _8189_1_>_FP
___AACT___TT___GGAC______CTAG______
18. _8189_3_>_FP
___AACT___TT___GGAC______CTAG______
19. _8189_5_>_FP
___AACT___TT___GGAC______CTAG______
20. _8189_9_>_FP
___AACT___TT___GGAC______CTAG______
21. _Row_1_C0199_2A
___CCCC___TT___GGCC______TTGG______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-08-067-1-89
CTCCGGGGGTGGTTAACGAAGGCCCCCC
2. _GC-08-067-1-89
CTCCGGGGGTGGTTAACGAAGGCCCCCC
3. _GC-08-067-1-89
CTCCGGGGGTGGTTAACGAAGGCCCCCC
4. _GC-08-067-1-89
CTCCGGGGGTGGTTAACGAAGGCCCCCC
5. _GC-08-067-1-89
CTCCGGGGGTGGTTAACGAAGGCCCCCC
6. _GC-08-067-1-89
CTCCGGGGGTGGTTAACGAAGGCCCCCC
7. _GC-08-067-1-89
CTCCGGGGGTGGTTAACGAAGGCCCCCC
8. _GC-08-067-1-89
CTCCGGGGGTGGTTAACGAAGGCCCCCC
9. _GC-08-067-1-89
CTCCGGGGGTGGTTAACGAAGGCCCCCC
10. _GC-08-067-1-89
CTCCGGGGGTGGTTAACGAAGG___CCCC
11. _8189_2
______GG_____________________GG___CC___
12. _8189_6
______GG_____________________GG___CC___
13. _8189_7
______GG_____________________GG___CC___
14. _8189_8
______GG_____________________GG___CC___
15. _8189_10
______GG_____________________GG___CC___
16. _8189_12
______GG_____________________GG___CC___
17. _8189_1_>_FP
______GG_____________________GG___CC___
18. _8189_3_>_FP
______GG_____________________GG___CC___
19. _8189_5_>_FP
______GG_____________________GG___CC___
20. _8189_9_>_FP
______GG_____________________GG___CC___
21. _Row_1_C0199_2A
______GT_____________________CG___CC___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-08-067-1-89
GGCTCGCCAACTAGCTTTCCCCGGGGAA
2. _GC-08-067-1-89
GGCTCGCCAACTAGCTTTCCCCGGGGAA
3. _GC-08-067-1-89
GGCTCGCCAACTAGCTTTCCCCGGGGAA
4. _GC-08-067-1-89
GGCTCGCCAACTAGCTTTCCCCGGGGAA
5. _GC-08-067-1-89
GGCTCGCCAACTAGCTTTCCCCGGGGAA
6. _GC-08-067-1-89
GGCTCGCCAACTAGCTTTCCCCGGGGAA
7. _GC-08-067-1-89
GGCTCGCCAACTAGCTTTCCCCGGGGAA
8. _GC-08-067-1-89
GGCTCGCCAACTAGCTTTCCCCGGGGAA
9. _GC-08-067-1-89
___CT___CCAACTAGCTTTCCCCGGGGAA
10. _GC-08-067-1-89
GGCTCGCCAACTAGCTTTCCCCGGGGAA
11. _8189_2
___CTCG___AACTAG_________CCGG___AA
12. _8189_6
___CTCG___AACTAG_________CCGG___AA
13. _8189_7
___CTCG___AACTAG_________CCGG___AA
14. _8189_8
___CTCG___AACTAG_________CCGG___AA
15. _8189_10
___CT______AACTAG_________CCGG___AA
16. _8189_12
___CTCG___AACTAG_________CCGG___AA
17. _8189_1_>_FP
___CTCG___AACTAG_________CCGG___AA
18. _8189_3_>_FP
___CTCG___AACTAG_________CCGG___AA
19. _8189_5_>_FP
___CTCG___AACTAG_________CCGG___AA
20. _8189_9_>_FP
___CTCG___AACTAG_________CCGG___AA
21. _Row_1_C0199_2A
___TTGG___AACTAA_________CTAA___AA
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-08-067-1-89
CCGGTTCCTTCTCCGTCCTTTTTTACGG
2. _GC-08-067-1-89
CCGGTTCCTTCTCCGTCCTTTTTTACGG
3. _GC-08-067-1-89
CCGGTTCCTTCTCCGTCCTTTTTTACGG
4. _GC-08-067-1-89
CCGGTTCCTTCTCCGTCCTTTTTTACGG
5. _GC-08-067-1-89
CCGGTTCCTTCTCCGTCCTTTTTTACGG
6. _GC-08-067-1-89
CCGGTTCCTTCTCCGTCCTTTTTTACGG
7. _GC-08-067-1-89
CCGGTTCCTTCTCCGTCCTTTTTTACGG
8. _GC-08-067-1-89
CCGGTTCCTTCTCCGTCCTTTTTTACGG
9. _GC-08-067-1-89
CCGGTTCCTTCTCCGTCCTTTTTTACGG
10. _GC-08-067-1-89
CCGGTTCCTTCTCCGTCCTTTTTTACGG
11. _8189_2
_________CC______CC______TTTT___AC___
12. _8189_6
_________CC______CC______TTTT___AC___
13. _8189_7
_________CC______CC______TTTT___AC___
14. _8189_8
_________CC______CC______TTTT___AC___
15. _8189_10
_________CC______CC______TTTT___AC___
16. _8189_12
_________CC______CC______TTTT___AC___
17. _8189_1_>_FP
_________CC______CC______TTTT___AC___
18. _8189_3_>_FP
_________CC______CC______TTTT___AC___
19. _8189_5_>_FP
_________CC______CC______TTTT___AC___
20. _8189_9_>_FP
_________CC______CC______TTTT___AC___
21. _Row_1_C0199_2A
_________TT______CT______TTCC___AA___
 85 86 87 88 89 90 91 92 93 94 95    
1. _GC-08-067-1-89
TTCCCCGGGGCTAAAGACAAACX_XX_XX_X
2. _GC-08-067-1-89
TTCCCCGGGGCTAAAGACAAACX_XX_XX_X
3. _GC-08-067-1-89
TTCCCCGGGGCTAAAGACAAACX_XX_XX_X
4. _GC-08-067-1-89
TTCCCCGGGGCTAAAGACAAACX_XX_XX_X
5. _GC-08-067-1-89
TTCCCCGGGGCTAAAGACAAACX_XX_XX_X
6. _GC-08-067-1-89
TTCCCCGGGGCTAAAGACAAACX_XX_XX_X
7. _GC-08-067-1-89
TTCCCCGGGGCTAAAGACAAACX_XX_XX_X
8. _GC-08-067-1-89
TTCCCCGGGGCTAAAGACAAACX_XX_XX_X
9. _GC-08-067-1-89
TTCCCCGGGGCTAAAGACAAACX_XX_XX_X
10. _GC-08-067-1-89
TTCCCCGGGGCTAAAGACAAACX_XX_XX_X
11. _8189_2
TT___CCGGGGCT_______________X_XX_XX_X
12. _8189_6
TT___CCGGGGCT_______________X_XX_XX_X
13. _8189_7
TT___CCGGGGCT_______________X_XX_XX_X
14. _8189_8
TT___CCGGGGCT_______________X_XX_XX_X
15. _8189_10
TT___CCGGGGCT_______________X_XX_XX_X
16. _8189_12
TT___CCGGGGCT_______________X_XX_XX_X
17. _8189_1_>_FP
TT___CCGGGGCT_______________X_XX_XX_X
18. _8189_3_>_FP
TT___CCGGGGCT_______________X_XX_XX_X
19. _8189_5_>_FP
TT___CCGGGGCT_______________X_XX_XX_X
20. _8189_9_>_FP
TT___CCGGGGCT_______________X_XX_XX_X
21. _Row_1_C0199_2A
TT___CCGGAACT_______________X_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._ICS_16 GC-08-067-1-89
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
2._ICS_16 GC-08-067-1-89
Location: Tree: 2
Notes: 2
 Mars, 2018
3._ICS_16 GC-08-067-1-89
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018
4._ICS_16 GC-08-067-1-89
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018
5._ICS_16 GC-08-067-1-89
Location: Tree: 6
Notes: 6
 Mars, 2018
6._ICS_16 GC-08-067-1-89
Location: Tree: 7
Notes: 7
 Mars, 2018
7._ICS_16 GC-08-067-1-89
Location: Tree: 8
Notes: 8
 Mars, 2018
8._ICS_16 GC-08-067-1-89
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018
9._ICS_16 GC-08-067-1-89
Location: Tree: 10
Notes: 10
 Mars, 2018
10._ICS_16 GC-08-067-1-89
Location: Tree: 12
Notes: 12
 Mars, 2018
11._ICS_16
Location: 8189 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
12._ICS_16
Location: 8189 6
 Dapeng Zhang, 2016
13._ICS_16
Location: 8189 7
 Dapeng Zhang, 2016
14._ICS_16
Location: 8189 8
 Dapeng Zhang, 2016
15._ICS_16
Location: 8189 10
 Dapeng Zhang, 2016
16._ICS_16
Location: 8189 12
 Dapeng Zhang, 2016
17._ICS_16
Location: 8189 1 > FP
 Dapeng Zhang, 2016
18._ICS_16
Location: 8189 3 > FP
 Dapeng Zhang, 2016
19._ICS_16
Location: 8189 5 > FP
 Dapeng Zhang, 2016
20._ICS_16
Location: 8189 9 > FP
 Dapeng Zhang, 2016

Malaysian Cocoa Board (MCB) Malaysia

21._ICS_16
Location: Row 1 C0199 2A
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP521 30TcSNP529
31TcSNP534 32TcSNP547 33TcSNP560 34TcSNP561 35TcSNP577
36TcSNP591 37TcSNP602 38TcSNP606 39TcSNP619 40TcSNP645
41TcSNP653 42TcSNP689 43TcSNP701 44TcSNP702 45TcSNP723
46TcSNP731 47TcSNP751 48TcSNP776 49TcSNP799 50TcSNP823
51TcSNP836 52TcSNP860 53TcSNP872 54TcSNP878 55TcSNP891
56TcSNP894 57TcSNP899 58TcSNP917 59TcSNP929 60TcSNP944
61TcSNP953 62TcSNP994 63TcSNP998 64TcSNP999 65TcSNP1034
66TcSNP1041 67TcSNP1060 68TcSNP1062 69TcSNP1063 70TcSNP1075
71TcSNP1096 72TcSNP1111 73TcSNP1126 74TcSNP1144 75TcSNP1149
76TcSNP1156 77TcSNP1165 78TcSNP1175 79TcSNP1242 80TcSNP1253
81TcSNP1270 82TcSNP1309 83TcSNP1350 84TcSNP1383 85TcSNP1414
86TcSNP1439 87TcSNP1442 88TcSNP1458 89TcSNP1484 90TcSNP1520
91Tcm001s00947643 92Tcm002s20575712 93Tcm003s01336581 94Tcm003s07402719 95Tcm006s26664133