SNP Profiles of "ICS 6"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _8160_6
GG___AT_______________ACGTCT______AC
2. _GC-08-049-1-60
GGGGATAGCTCTACCTACGTCTATAGAC
3. _GC-08-049-1-60
GGGGATAGCTCTACCTACGTCTATAGAC
4. _8160_4
GG___AT_______________ACGTCT______AC
5. _8160_11
GG___AT_______________ACGTCT______AC
6. _GC-08-049-1-60
GGGGATAGCTCTACCTACGTCTATAGAC
7. _GC-08-049-1-60
GGGGATAGCTCTACCTACGTCTATAGAC
8. _8160_8
GG___AT_______________ACGTCT______AC
9. _GC-08-049-1-60
GGGGATAGCTCTACCTACGTCTATAGAC
10. _8160_5
GG___AT_______________ACGTCT______AC
11. _8160_2_>_FP
GG___AT_______________ACGTCT______AC
12. _GC-08-049-1-60
GGGGATAGCTCTACCTACGTCTATAGAC
13. _GC-08-049-1-60
GGGGATAGCTCTACCTACGTCTATAGAC
14. _8160_1
GG___AT_______________ACGTCT______AC
15. _8160_9
GG___AT_______________ACGTCT______AC
16. _GC-08-49-1-60
GGCCATAGAGAGACAGACACAGATAGAC
17. _GC-08-049-1-60
GGGGATAGCTCTACCTACGTCTATAGAC
18. _RUQ_721
GGCCATGGAAAGACAGCCACGGATGGAA
19. _RUQ_721
GG___AT_______________CCGTCC______AA
20. _RUQ_721
_______________CTAC___CCGTCC___GGAA
21. _6B_E281_T2
GG___AT_______________CCGTCC______AA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _8160_6
CG______CT_________AT______GG______AG
2. _GC-08-049-1-60
CGAGGGCTATAGAGATCTAGGGATCGAG
3. _GC-08-049-1-60
CGAGGGCTATAGAGATCTAGGGATCGAG
4. _8160_4
CGAG___CT_________AT______GG______AG
5. _8160_11
CGAG___CT_________AT______GG______AG
6. _GC-08-049-1-60
CGAGGGCTATAGAGATCTAGGGATCGAG
7. _GC-08-049-1-60
CGAGGGCTATAGAGATCTAGGGATCGAG
8. _8160_8
CGAG___CT_________AT______GG______AG
9. _GC-08-049-1-60
CGAGGGCTATAGAGATCTAGGGATCGAG
10. _8160_5
CGAG___CT_________AT______GG______AG
11. _8160_2_>_FP
CGAG___CT_________AT______GG______AG
12. _GC-08-049-1-60
CGAGGGCTATAGAGATCTAGGGATCGAG
13. _GC-08-049-1-60
CGAGGGCTATAGAGATCTAGGGATCGAG
14. _8160_1
CGAG___CT_________AT______GG______AG
15. _8160_9
CGAG___CT_________AT______GG______AG
16. _GC-08-49-1-60
CGAGGGAGATAGAGATAGAGGGATCG___
17. _GC-08-049-1-60
CG___GGCTATAGAGATCTAGGGATCGAG
18. _RUQ_721
GGGGGGGGTTGGAGATAGGGGGATCG___
19. _RUQ_721
CCGG___CC_________AT______GG______AA
20. _RUQ_721
CCGG___CC___GGAGAT____________CGAA
21. _6B_E281_T2
___GG___CC_________AT______GG______AA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _8160_6
______CCCT___GT___CCAC______CTGG___
2. _GC-08-049-1-60
___CCCCCTGGGTAACCACCCAGCTGGAG
3. _GC-08-049-1-60
___CCCCCTGGGTAACCACCCAGCTGGAG
4. _8160_4
______CCCT___GT___CCAC______CTGG___
5. _8160_11
______CCCT___GT___CCAC______CTGG___
6. _GC-08-049-1-60
___CCCCCTGGGTAACCACCCAGCTGGAG
7. _GC-08-049-1-60
___CCCCCTGGGTAACCACCCAGCTGGAG
8. _8160_8
______CCCT___GT___CCAC______CTGG___
9. _GC-08-049-1-60
___CCCCCTGGGTAACCACCCAGCTGGAG
10. _8160_5
______CCCT___GT___CCAC______CTGG___
11. _8160_2_>_FP
______CCCT___GT___CCAC______CTGG___
12. _GC-08-049-1-60
___CCCCCTGGGTAACCACCCAGCTGGAG
13. _GC-08-049-1-60
___CCCCCTGGGTAACCACCCAGCTGGAG
14. _8160_1
______CCCT___GT___CCAC______CTGG___
15. _8160_9
______CCCT___GT___CCAC______CTGG___
16. _GC-08-49-1-60
AGCCCC___GGACAACCACGG___AG___AG
17. _GC-08-049-1-60
___CCCCCTGGGTAACCACCCAGCTGGAG
18. _RUQ_721
AACCCC___GGAAAACCACGG___AG___AG
19. _RUQ_721
______CCCT___TT___CCAC______CTAG___
20. _RUQ_721
______CCCT___TT___CCAACC___CT______
21. _6B_E281_T2
______CCCT___TT___CCAC______CTAG___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _8160_6
_________GT_____________________CG___CC
2. _GC-08-049-1-60
AGCTCTGTAGGTGTGTCCGGAACGCGCC
3. _GC-08-049-1-60
AGCTCTGTAGGTGTGTCCGGAACGCGCC
4. _8160_4
_________GT_____________________CG___CC
5. _8160_11
_________GT_____________________CG___CC
6. _GC-08-049-1-60
AGCTCTGTAGGTGTGTCCGGAACGCGCC
7. _GC-08-049-1-60
AGCTCTGTAGGTGTGTCCGGAACGCGCC
8. _8160_8
_________GT_____________________CG___CC
9. _GC-08-049-1-60
AGCTCTGTAGGTGTGTCCGGAACGCGCC
10. _8160_5
_________GT_____________________CG___CC
11. _8160_2_>_FP
_________GT_____________________CG___CC
12. _GC-08-049-1-60
AGCTCTGTAGGTGTGTCCGGAACGCGCC
13. _GC-08-049-1-60
AGCTCTGTAGGTGTGTCCGGAACGCGCC
14. _8160_1
_________GT_____________________CG___CC
15. _8160_9
_________GT_____________________CG___CC
16. _GC-08-49-1-60
AG______ACAGACACACCCCCAGCG___GG
17. _GC-08-049-1-60
AGCTCTGTAGGTGTGTCCGGAACGCGCC
18. _RUQ_721
AG______CCGGACACAACCCCAAGG___GG
19. _RUQ_721
_________GG_____________________CC___CC
20. _RUQ_721
______TTGGGG______TTCC______CCCCCC
21. _6B_E281_T2
_________GG_____________________CC___CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _8160_6
______TTGG___AACTAA_________CTAA___
2. _GC-08-049-1-60
CCGGTTGGCTAACTAACTCTCCCTAAGT
3. _GC-08-049-1-60
CCGGTTGGCTAACTAACTCTCCCTAAGT
4. _8160_4
______TTGG___AACTAA_________CTAA___
5. _8160_11
______TTGG___AACTAA_________CTAA___
6. _GC-08-049-1-60
CCGGTTGGCTAACTAACTCTCCCTAAGT
7. _GC-08-049-1-60
CCGGTTGGCTAACTAACTCTCCCTAAGT
8. _8160_8
______TTGG___AACTAA_________CTAA___
9. _GC-08-049-1-60
CCGGTTGGCTAACTAACTCTCCCTAAGT
10. _8160_5
______TTGG___AACTAA_________CTAA___
11. _8160_2_>_FP
______TTGG___AACTAA_________CTAA___
12. _GC-08-049-1-60
CCGGTTGGCTAACTAACTCTCCCTAAGT
13. _GC-08-049-1-60
CCGGTTGGCTAACTAACTCTCCCTAAGT
14. _8160_1
______TTGG___AACTAA_________CTAA___
15. _8160_9
______TTGG___AACTAA_________CTAA___
16. _GC-08-49-1-60
GGGGAAGGAGAAAGAA___AG___AGAAAC
17. _GC-08-049-1-60
CCGGTTGGCTAACTAACTCTCCCTAAGT
18. _RUQ_721
GGAGAAGGAAAAAGAA___AG___GGAAAA
19. _RUQ_721
______TTGG___AACTAA_________CCAA___
20. _RUQ_721
___-_______________AA-______CC___TT
21. _6B_E281_T2
______TTGG___AACTAA_________CCAA___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _8160_6
AA_________CT______CT______GTCC___AA
2. _GC-08-049-1-60
AACCAGATCTTTTTCTGTCCGT___TTAA
3. _GC-08-049-1-60
AACCAGATCTTTTTCTGTCCGTCCTTAA
4. _8160_4
AA_________CT______CT______GT______AA
5. _8160_11
AA_________CT______CT______GTCC___AA
6. _GC-08-049-1-60
AACCAGATCTTTTTCTGTCCGTCCTTAA
7. _GC-08-049-1-60
AACCAGATCTTTTTCTGTCCGTCCTTAA
8. _8160_8
AA_________CT______CT______GTCC___AA
9. _GC-08-049-1-60
AACCAGATCTTTTTCTGTCCGTCCTTAA
10. _8160_5
AA_________CT______CT______GTCC___AA
11. _8160_2_>_FP
AA_________CT______CT______GTCC___AA
12. _GC-08-049-1-60
AACCAGATCTTTTTCTGTCCGTCCTTAA
13. _GC-08-049-1-60
AACCAGATCTTTTTCTGTCCGTCCTTAA
14. _8160_1
AA_________CT______CT______GTCC___AA
15. _8160_9
AA_________CT______CT______GTCC___AA
16. _GC-08-49-1-60
AAGGAG______AAAA___AC___AAGGAGAA
17. _GC-08-049-1-60
AACCAGATCTTTTTCTGTCCGTCCTTAA
18. _RUQ_721
AAGGAG______AAAA___AC___AAGGAAAA
19. _RUQ_721
AA_________CT______CC______TTCC___AA
20. _RUQ_721
______AGAA__________________TT___TT___
21. _6B_E281_T2
TT__________________CC______TTCC___AA
 85 86 87 88 89 90 91 92 93 94 95 96   
1. _8160_6
___TT___CTCGAGCT_______________X_XX_X
2. _GC-08-049-1-60
GGTTCTCTCGAGCTACAGCCAGAAX_XX_X
3. _GC-08-049-1-60
GGTTCTCTCGAGCTACAGCCAGAAX_XX_X
4. _8160_4
___TT___CTCGAGCT_______________X_XX_X
5. _8160_11
___TT___CTCGAGCT_______________X_XX_X
6. _GC-08-049-1-60
GGTTCTCTCGAGCTACAGCCAGAAX_XX_X
7. _GC-08-049-1-60
GGTTCTCTCGAGCTACAGCCAGAAX_XX_X
8. _8160_8
___TT___CTCGAGCT_______________X_XX_X
9. _GC-08-049-1-60
GGTTCTCTCGAGCTACAGCCAGAAX_XX_X
10. _8160_5
___TT___CTCGAGCT_______________X_XX_X
11. _8160_2_>_FP
___TT___CTCGAGCT_______________X_XX_X
12. _GC-08-049-1-60
GGTTCTCTCGAGCTACAGCCAGAAX_XX_X
13. _GC-08-049-1-60
GGTTCTCTCGAGCTACAGCCAGAAX_XX_X
14. _8160_1
___TT___CTCGAGCT_______________X_XX_X
15. _8160_9
___TT___CTCGAGCT_______________X_XX_X
16. _GC-08-49-1-60
GGAAAGAGCCAGAGAC___CCAGAAX_XX_X
17. _GC-08-049-1-60
GGTTCTCTCGAGCTACAGCCAGAAX_XX_X
18. _RUQ_721
GGAAAAAACCAAAACC___ACAGAAX_XX_X
19. _RUQ_721
___CT___TTCGAG__________________X_XX_X
20. _RUQ_721
______TTTTCGAA__________________X_XX_X
21. _6B_E281_T2
___TT___TTGGAATT_______________X_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._ICS_6
Location: 8160 6
 Dapeng Zhang, 2016
2._ICS_6 GC-08-049-1-60
Location: Tree: 4
Notes: 4
 Mars, 2018
3._ICS_6 GC-08-049-1-60
Location: Tree: 11
Notes: 11
 Mars, 2018
4._ICS_6
Location: 8160 4
 Dapeng Zhang, 2016
5._ICS_6
Location: 8160 11
 Dapeng Zhang, 2016
6._ICS_6 GC-08-049-1-60
Location: Tree: 1
Notes: 1
 Mars, 2018
7._ICS_6 GC-08-049-1-60
Location: Tree: 8
Notes: 8
 Mars, 2018
8._ICS_6
Location: 8160 8
 Dapeng Zhang, 2016
9._ICS_6 GC-08-049-1-60
Location: Tree: 5
Notes: 5
 Mars, 2018
10._ICS_6
Location: 8160 5
 Dapeng Zhang, 2016
11._ICS_6
Location: 8160 2 > FP
 Dapeng Zhang, 2016
12._ICS_6 GC-08-049-1-60
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018
13._ICS_6 GC-08-049-1-60
Location: Tree: 9
Notes: 9
 Mars, 2018
14._ICS_6
Location: 8160 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
15._ICS_6
Location: 8160 9
 Dapeng Zhang, 2016
16._ICS_6 GC-08-49-1-60
Location: Field: 8, Block: 1, Rep: 60, Tree: 2 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018
17._ICS_6 GC-08-049-1-60
Location: Tree: 6
Notes: 6
 Mars, 2018

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

18._ICS_6 RUQ 721
Notes: Reading_Collection
 Mars, 2018
19._ICS_6 RUQ 721
 Dapeng Zhang, 2016
20._ICS_6 RUQ 721
 Dapeng Zhang, 2014

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

21._ICS_6
Location: 6B E281 T2
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133