SNP Profiles of "GU 171 /C"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-01-094-5-11
______GGGGTT___GG______CCTTCCTT___
2. _GC-01-094-5-11
______GGGGTT___GG______CCTTCCTT___
3. _GC-01-094-5-11
______GGGGTT___GG______CCTTCCTT___
4. _GC-01-094-5-11
______GGGGTT___GG______CCTT___TT___
5. _GC-01-094-5-11
______GGGGTT___GG______CCTTCCTT___
6. _GC-01-094-5-11
______GGGGTT___GG______CCTTCCTT___
7. _GC-01-094-5-11
______GGGGTT___GG______CCTTCCTT___
8. _GC-01-94-5-11
______GG___TT___GG______GGAACCAA___
9. _GC-01-94-5-11
______GGCCTT___GG______GGAACCAA___
10. _1511_7
______GG___TT___________________________
11. _1511_9
______GG___TT___________________________
12. _1511_12
______GG___TT___________________________
13. _1511_14
______GG___TT___________________________
14. _1511_1_>_FP
______GG___TT___________________________
15. _1511_10_>_F
______GG___TT___________________________
16. _1511_2_>_FP
______GG___TT___________________________
17. _RUQ_195
TTAA_________TT___CCGG____________TT
18. _RUQ_195
______GGCCTT___GG______GGAACCAA___
19. _RUQ_195
______________________________TTCC______
20. _RUQ_195
______GG___TT___________________________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-01-094-5-11
___AATTTTAAGG______AA___CCGGGGCC
2. _GC-01-094-5-11
___AATTTTAAGG______AA___CCGGGGCC
3. _GC-01-094-5-11
___AATTTTAAGG______AA___CCGGGGCC
4. _GC-01-094-5-11
___AATTTTAAGG______AA___CCGGGGCC
5. _GC-01-094-5-11
___AATTTTAAGG______AA___CCGGGGCC
6. _GC-01-094-5-11
___AATTTTAAGG______AA___CCGGGGCC
7. _GC-01-094-5-11
___AATTTTAAGG______AA___CCGGGGCC
8. _GC-01-94-5-11
___AAAAAATTGG______AA___GGGGGGGG
9. _GC-01-94-5-11
___AAAAAATTGG______AA___GGGGGGGG
10. _1511_7
___AATTTT____________AA___CCGG___CC
11. _1511_9
___AATTTT____________AA___CCGG___CC
12. _1511_12
___AATTTT____________AA___CCGG___CC
13. _1511_14
___AATTTT____________AA___CCGG___CC
14. _1511_1_>_FP
___AATTTT____________AA___CCGG___CC
15. _1511_10_>_F
___AATTTT____________AA___CCGG___CC
16. _1511_2_>_FP
___AATTTT____________AA___CCGG___CC
17. _RUQ_195
AAAA____________CCGG___GG___GG______
18. _RUQ_195
___AAAAAATTGG______AA___GGGGGGGG
19. _RUQ_195
___AATTTT___GG______AA___CCGG___CC
20. _RUQ_195
___AATTTT____________AA___CCGG___CC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-01-094-5-11
______AAGG___GGAATTGG___GGTTCCAG
2. _GC-01-094-5-11
______AAGG___GGAATTGG___GGTTCCAG
3. _GC-01-094-5-11
______AAGG___GGAATTGG___GGTTCCAG
4. _GC-01-094-5-11
______AAGG___GGAATTGG___GGTTCCAG
5. _GC-01-094-5-11
______AAGG___GGAATTGG___GGTTCCAG
6. _GC-01-094-5-11
______AAGG___GGAATTGG___GGTTCCAG
7. _GC-01-094-5-11
______AAGG___GGAATTGG___GGTTCCAG
8. _GC-01-94-5-11
______TTGG___GGAAAAGG___GGTTGG___
9. _GC-01-94-5-11
______TTGG___GGAAAAGG___GGTTGG___
10. _1511_7
__________________AA_________GG______AG
11. _1511_9
__________________AA_________GG______AG
12. _1511_12
__________________AA_________GG______AG
13. _1511_14
__________________AA_________GG______AG
14. _1511_1_>_FP
__________________AA_________GG______AG
15. _1511_10_>_F
__________________AA_________GG______AG
16. _1511_2_>_FP
__________________AA_________GG______AG
17. _RUQ_195
CCAA___GGAA____________CT____________
18. _RUQ_195
______TTGG___GGAAAAGG___GGTTGG___
19. _RUQ_195
_________GG___GGAA_______________CCAG
20. _RUQ_195
__________________AA_________AG______AG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-01-094-5-11
______CC___AACC___GGGGGGCC___CCCC
2. _GC-01-094-5-11
______CC___AACC___GGGGGGCC___CCCC
3. _GC-01-094-5-11
______CC___AACC___GGGGGGCC___CCCC
4. _GC-01-094-5-11
______CC___AACC___GGGGGGCC___CCCC
5. _GC-01-094-5-11
______CC___AACC___GGGGGGCC___CCCC
6. _GC-01-094-5-11
______CC___AACC___GGGGGGCC___CCCC
7. _GC-01-094-5-11
______CC___AACC___GGGGGGCC___CCCC
8. _GC-01-94-5-11
AA___CC___AA______GGCCGGCC___CCGG
9. _GC-01-94-5-11
AA___CC___AA______GGCCGGCC___CCGG
10. _1511_7
____________AACC______GG___CC___CC___
11. _1511_9
____________AACC______GG___CC___CC___
12. _1511_12
____________AACC______GG___CC___CC___
13. _1511_14
____________AACC______GG___CC___CC___
14. _1511_1_>_FP
____________AACC______GG___CC___CC___
15. _1511_10_>_F
____________AACC______GG___CC___CC___
16. _1511_2_>_FP
____________AACC______GG___CC___CC___
17. _RUQ_195
___CC___CT______AA_________CCAACCCC
18. _RUQ_195
AA___CC___AA______GGCCGGCC___CCGG
19. _RUQ_195
____________AACC______GG___CC___CCCC
20. _RUQ_195
____________AACC______GG___CC___CC___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-01-094-5-11
AACC_________GGAA___AACCCCGGAA___
2. _GC-01-094-5-11
AACC_________GGAA___AACCCCGGAA___
3. _GC-01-094-5-11
AACC_________GGAA___AACCCCGGAA___
4. _GC-01-094-5-11
AACC_________GGAA___AACCCCGGAA___
5. _GC-01-094-5-11
AACC_________GGAA___AACCCCGGAA___
6. _GC-01-094-5-11
AACC_________GGAA___AACCCCGGAA___
7. _GC-01-094-5-11
AACC_________GGAA___AACCCCGGAA___
8. _GC-01-94-5-11
___GG____________GG___AA______CCAA___
9. _GC-01-94-5-11
___GG____________GG___AA______CCAA___
10. _1511_7
___CC_________GG_______________GG______
11. _1511_9
___CC_________GG_______________GG______
12. _1511_12
___CC_________GG_______________GG______
13. _1511_14
___CC_________GG_______________GG______
14. _1511_1_>_FP
___CC_________GG_______________GG______
15. _1511_10_>_F
___CC_________GG_______________GG______
16. _1511_2_>_FP
___CC_________GG_______________GG______
17. _RUQ_195
______CCGGCCAA___CC______CCGGAACT
18. _RUQ_195
___GG____________GG___AA______CCAA___
19. _RUQ_195
___CC________________________CCGGAA___
20. _RUQ_195
___CC_________AA_______________GG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-01-094-5-11
GTTTTT___AA___GG___GGCCCCCCGGCC
2. _GC-01-094-5-11
GTTTTT___AA___GG___GGCCCCCCGGCC
3. _GC-01-094-5-11
GTTTTT___AA___GG___GGCCCCCCGGCC
4. _GC-01-094-5-11
GTTTTT___AA___GG___GGCCCCCCGGCC
5. _GC-01-094-5-11
GTTTTT___AA___GG___GGCCCCCCGGCC
6. _GC-01-094-5-11
GTTTTT___AA___GG___GGCCCCCCGGCC
7. _GC-01-094-5-11
GTTTTT___AA___GG___GGCCCCCCGGCC
8. _GC-01-94-5-11
ACAAAA___AA___CCGGCC___GGGGGGGG
9. _GC-01-94-5-11
ACAAAA___AA___CCGGCC___GGGGGGGG
10. _1511_7
________________________GG___CC______CC
11. _1511_9
________________________GG___CC______CC
12. _1511_12
________________________GG___CC______CC
13. _1511_14
________________________GG___CC______CC
14. _1511_1_>_FP
________________________GG___CC______CC
15. _1511_10_>_F
________________________GG___CC______CC
16. _1511_2_>_FP
________________________GG___CC______CC
17. _RUQ_195
_________TTAAAACC___GG_________GG___
18. _RUQ_195
ACAAAA___AA___CCGGCC___GGGGGGGG
19. _RUQ_195
______TT___AA_________GGCCCC___GG___
20. _RUQ_195
________________________GG___CC______CC
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1. _GC-01-094-5-11
GGCC___AATTAACC______TTCCCCGGGG
2. _GC-01-094-5-11
GGCC___AATTAACC______TTCCCCGGGG
3. _GC-01-094-5-11
GGCC___AATTAACC______TTCCCCGGGG
4. _GC-01-094-5-11
GGCC___AATTAACC______TTCCCCGGGG
5. _GC-01-094-5-11
GGCC___AATTAACC______TTCCCCGGGG
6. _GC-01-094-5-11
GGCC___AATTAACC______TTCCCCGGGG
7. _GC-01-094-5-11
GGCC___AATTAACC______TTCCCCGGGG
8. _GC-01-94-5-11
GGGG___AAAAAA_________AA___GGGGCC
9. _GC-01-94-5-11
GGGG___AAAAAA_________AA___GGGGCC
10. _1511_7
GG______AATTAA_______________CCGG___
11. _1511_9
GG______AATTAA_______________CCGG___
12. _1511_12
GG______AATTAA_______________CCGG___
13. _1511_14
GG______AATTAA_______________CCGG___
14. _1511_1_>_FP
GG______AATTAA_______________CCGG___
15. _1511_10_>_F
GG______AATTAA_______________CCGG___
16. _1511_2_>_FP
GG______AATTAA_______________CCGG___
17. _RUQ_195
______CC______AACCCCAA_________GG___
18. _RUQ_195
GGGG___AAAAAA_________AA___GGGGCC
19. _RUQ_195
_______________AACC____________CC___GG
20. _RUQ_195
GG______AATTAA_______________CCGG___
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1. _GC-01-094-5-11
AACCGG___TTCCTTCCCCTT______CCTT
2. _GC-01-094-5-11
AACCGG___TTCCTTCCCCTT______CCTT
3. _GC-01-094-5-11
AACCGG___TTCCTTCCCCTT______CCTT
4. _GC-01-094-5-11
AACCGG___TTCCTTCCCCTT______CCTT
5. _GC-01-094-5-11
AACCGG___TTCCTTCCCCTT______CCTT
6. _GC-01-094-5-11
AACCGG___TTCCTTCCCCTT______CCTT
7. _GC-01-094-5-11
AACCGG___TTCCTTCCCCTT______CCTT
8. _GC-01-94-5-11
AAGGGG_________AAGG___AA_________AA
9. _GC-01-94-5-11
AAGGGG_________AAGG___AA_________AA
10. _1511_7
AA____________CC______CC____________TT
11. _1511_9
AA____________CC______CC____________TT
12. _1511_12
AA____________CC______CC____________TT
13. _1511_14
AA____________CC______CC____________TT
14. _1511_1_>_FP
AA____________CC______CC____________TT
15. _1511_10_>_F
AA____________CC______CC____________TT
16. _1511_2_>_FP
AA____________CC______CC____________TT
17. _RUQ_195
_________TT___CC____________TTAA___TT
18. _RUQ_195
AAGGGG_________AAGG___AA_________AA
19. _RUQ_195
______GG___TT________________________TT
20. _RUQ_195
AA____________CC______CC____________TT
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1. _GC-01-094-5-11
TT___TT___GG______TTCCCCGGAACC___
2. _GC-01-094-5-11
TT___TT___GG______TTCCCCGGAACC___
3. _GC-01-094-5-11
TT___TT___GG______TTCCCCGGAACC___
4. _GC-01-094-5-11
TT___TT___GG______TTCCCCGGAACC___
5. _GC-01-094-5-11
TT___TT___GG______TTCCCCGGAACC___
6. _GC-01-094-5-11
TT___TT___GG______TTCCCCGGAACC___
7. _GC-01-094-5-11
TT___TT___GG______TTCCCCGGAACC___
8. _GC-01-94-5-11
AA___AACCGG______AAGGGGCCAAGG___
9. _GC-01-94-5-11
AA___AA___GG______AAGGGGCCAAGG___
10. _1511_7
TT__________________TT___CCGGAACC___
11. _1511_9
TT__________________TT___CCGGAACC___
12. _1511_12
TT__________________TT___CCGGAACC___
13. _1511_14
TT__________________TT___CCGGAACC___
14. _1511_1_>_FP
TT__________________TT___CCGGAACC___
15. _1511_10_>_F
TT__________________TT___CCGGAACC___
16. _1511_2_>_FP
TT__________________TT___CCGGAACC___
17. _RUQ_195
___GG_________AAGG_________GG______TT
18. _RUQ_195
AA___AACCGG______AAGGGGCCAAGG___
19. _RUQ_195
______TT_______________CCCCGGAA______
20. _RUQ_195
TT______CC_________TT___CCGGAGCC___
 127 128 129 130 131 132         
1. _GC-01-094-5-11
___CCGGCCGGCCX_XX_XX_XX_XX_XX_XX_XX_X
2. _GC-01-094-5-11
___CCGGCCGGCCX_XX_XX_XX_XX_XX_XX_XX_X
3. _GC-01-094-5-11
___CCGGCCGGCCX_XX_XX_XX_XX_XX_XX_XX_X
4. _GC-01-094-5-11
___CCGGCCGGCCX_XX_XX_XX_XX_XX_XX_XX_X
5. _GC-01-094-5-11
___CCGGCCGGCCX_XX_XX_XX_XX_XX_XX_XX_X
6. _GC-01-094-5-11
___CCGGCCGGCCX_XX_XX_XX_XX_XX_XX_XX_X
7. _GC-01-094-5-11
___CCGGCCGGCCX_XX_XX_XX_XX_XX_XX_XX_X
8. _GC-01-94-5-11
___CC___CCGGCCX_XX_XX_XX_XX_XX_XX_XX_X
9. _GC-01-94-5-11
___CC___CCGGCCX_XX_XX_XX_XX_XX_XX_XX_X
10. _1511_7
__________________X_XX_XX_XX_XX_XX_XX_XX_X
11. _1511_9
__________________X_XX_XX_XX_XX_XX_XX_XX_X
12. _1511_12
__________________X_XX_XX_XX_XX_XX_XX_XX_X
13. _1511_14
__________________X_XX_XX_XX_XX_XX_XX_XX_X
14. _1511_1_>_FP
__________________X_XX_XX_XX_XX_XX_XX_XX_X
15. _1511_10_>_F
__________________X_XX_XX_XX_XX_XX_XX_XX_X
16. _1511_2_>_FP
__________________X_XX_XX_XX_XX_XX_XX_XX_X
17. _RUQ_195
AA_______________X_XX_XX_XX_XX_XX_XX_XX_X
18. _RUQ_195
___CC___CCGGCCX_XX_XX_XX_XX_XX_XX_XX_X
19. _RUQ_195
__________________X_XX_XX_XX_XX_XX_XX_XX_X
20. _RUQ_195
__________________X_XX_XX_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._GU_171_/C GC-01-094-5-11
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
2._GU_171_/C GC-01-094-5-11
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018
3._GU_171_/C GC-01-094-5-11
Location: Tree: 7
Notes: 7
 Mars, 2018
4._GU_171_/C GC-01-094-5-11
Location: Tree: 9
Notes: 9
 Mars, 2018
5._GU_171_/C GC-01-094-5-11
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018
6._GU_171_/C GC-01-094-5-11
Location: Tree: 12
Notes: 12
 Mars, 2018
7._GU_171_/C GC-01-094-5-11
Location: Tree: 14
Notes: 14
 Mars, 2018
8._GU_171_/C GC-01-94-5-11
Location: Field: 1, Block: 5, Rep: 11, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018
9._GU_171_/C GC-01-94-5-11
Location: Field: 1, Block: 5, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018
10._GU_171_/C
Location: 1511 7
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
11._GU_171_/C
Location: 1511 9
 Dapeng Zhang, 2016
12._GU_171_/C
Location: 1511 12
 Dapeng Zhang, 2016
13._GU_171_/C
Location: 1511 14
 Dapeng Zhang, 2016
14._GU_171_/C
Location: 1511 1 > FP
 Dapeng Zhang, 2016
15._GU_171_/C
Location: 1511 10 > F
 Dapeng Zhang, 2016
16._GU_171_/C
Location: 1511 2 > FP
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

17._GU_171_/C RUQ 195
 Lambert Motilal, 2023
18._GU_171_/C RUQ 195
Notes: Reading_Collection
 Mars, 2018
19._GU_171_/C RUQ 195
 Dapeng Zhang, 2014
20._GU_171_/C RUQ 195
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1060 97TcSNP1062 98TcSNP1063 99TcSNP1075 100TcSNP1096
101TcSNP1111 102TcSNP1112 103TcSNP1126 104TcSNP1144 105TcSNP1149
106TcSNP1156 107TcSNP1165 108TcSNP1175 109TcSNP1205 110TcSNP1230
111TcSNP1242 112TcSNP1253 113TcSNP1270 114TcSNP1275 115TcSNP1309
116TcSNP1350 117TcSNP1383 118TcSNP1401 119TcSNP1404 120TcSNP1414
121TcSNP1439 122TcSNP1442 123TcSNP1458 124TcSNP1484 125TcSNP1520
126TcSNP1524 127TcSNP1527 128Tcm001s00947643 129Tcm002s20575712 130Tcm003s01336581
131Tcm003s07402719 132Tcm006s26664133