SNP Profiles of "PNG 296"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-01-113-6-10
GGGGTTGGCTTTCCCTACGGCCTTGGAA
2. _GC-01-113-6-10
GGGGTTGGCTTTCCCTACGGCCTTGGAA
3. _GC-01-113-6-10
GGGGTTGGCCCTCCTTAAGGCCATGGAA
4. _GC-01-113-6-10
GGGGTTGGCCCTCCTTAAGGCCATGGAA
5. _GC-01-113-6-10
GGGGTTGGCCCTCCTTAAGGCCATGGAA
6. _1610_1
GG___TT_______________ACGGCC______AA
7. _1610_2
GG___TT_______________ACGGCC______AA
8. _1610_3
GG___TT_______________AAGGCC______AA
9. _1610_4
GG___TT_______________AAGGCC______AA
10. _1610_5
GG___TT_______________AAGGCC______AA
11. _RUQ_1299
GGCCTTGGAGAACCAGACCCGGAAGGAA
12. _RUQ_1299
_______________TTCC___ACGGCC___GGAA
13. _RUQ_1299
GG___TT_______________ACGGCC______AA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-01-113-6-10
GGAAGGCTAAAGAGAACCAGGGAACCAA
2. _GC-01-113-6-10
GGAAGGCTAAAGAGAACCAGGGAACCAA
3. _GC-01-113-6-10
CGAGGGCCAAGGAGAACCAGGGAACCAG
4. _GC-01-113-6-10
CGAGGGCCAAGGAGAACCAGGGAACCAG
5. _GC-01-113-6-10
CGAGGGCCAAGGAGAACCAGGGAACCAG
6. _1610_1
GGAA___CT_________AA______GG______AA
7. _1610_2
GGAA___CT_________AA______GG______AA
8. _1610_3
CGAG___CC_________AA______GG______AG
9. _1610_4
CGAG___CC_________AA______GG______AG
10. _1610_5
CGAG___CC_________AA______GG______AG
11. _RUQ_1299
CCAAGGAGTTAGAGAAGGAGGGAAGG___
12. _RUQ_1299
GGAA___CT___AGAGAA____________CCAA
13. _RUQ_1299
GGAA___CT_________AA______GG______AA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-01-113-6-10
___ACCCCCGGTTGGGGACCCGGCTAAAG
2. _GC-01-113-6-10
___ACCCCCGGTTGGGGACCCGGCTAAAG
3. _GC-01-113-6-10
___AACCCTGGTTAGGGAACTAGCCAAGG
4. _GC-01-113-6-10
___AACCCTGGTTAGGGAACTAGCCAAGG
5. _GC-01-113-6-10
___AACCCTGGTTAGGGAACTAGCCAAGG
6. _1610_1
______CCCC___TT___GGAC______CTAA___
7. _1610_2
______CCCC___TT___GGAC______CTAA___
8. _1610_3
______CCCT___TT___GGAA______CCAA___
9. _1610_4
______CCCT___TT___GGAA______CCAA___
10. _1610_5
______CCCT___TT___GGAA______CCAA___
11. _RUQ_1299
GGACCC___GGAAGGGGACGG___AG___AA
12. _RUQ_1299
______CCCC___TT___GGAACC___CT______
13. _RUQ_1299
______CCCC___TT___GGAC______CTAA___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-01-113-6-10
AGTTCCGGGGTTGGTTACGG___CCCGCC
2. _GC-01-113-6-10
AGTTCCGGGGTTGGTTACGG___CCCGCC
3. _GC-01-113-6-10
GGTTCTGGGGTTGGTTCCGG___CCCGCT
4. _GC-01-113-6-10
GGTTCTGGGGTTGGTTCCGG___CCCGCT
5. _GC-01-113-6-10
GGTTCTGGGGTTGGTTCCGG___CCCGCT
6. _1610_1
_________GG_____________________CC___CC
7. _1610_2
_________GG_____________________CC___CC
8. _1610_3
_________GG_____________________CC___CT
9. _1610_4
_________GG_____________________CC___CT
10. _1610_5
_________GG_____________________CC___CT
11. _RUQ_1299
AG______CCGGAACCAAACCCGGGG___GG
12. _RUQ_1299
______TTGGGG______TTAC______CCCGCC
13. _RUQ_1299
_________GG_____________________CC___CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-01-113-6-10
CCGGTTGGCTAACCAGCCTTGGCTAGGT
2. _GC-01-113-6-10
CCGGTTGGCTAACCAGCCTTGGCTAGGT
3. _GC-01-113-6-10
CCGGTTGGTTAACCAGCTTTCGCTAAGT
4. _GC-01-113-6-10
CCGGTTGGTTAACCAGCTTTCGCTAAGT
5. _GC-01-113-6-10
CCGGTTGGTTAACCAGCTTTCGCTAAGT
6. _1610_1
______TTGG___AACCAG_________CTAG___
7. _1610_2
______TTGG___AACCAG_________CTAG___
8. _1610_3
______TTGG___AACCAG_________CTAA___
9. _1610_4
______TTGG___AACCAG_________CTAA___
10. _1610_5
______TTGG___AACCAG_________CTAA___
11. _RUQ_1299
GGGGAAGGAGAAGGAG___AA___AGAGAC
12. _RUQ_1299
___GG_______________AGCC______CT___GT
13. _RUQ_1299
______TTGG___AACCAG_________CTAG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-01-113-6-10
AACCGGATCTTTTTCCGGACGTCCTTAA
2. _GC-01-113-6-10
AACCGGATCTTT___CCGGACGTCCTTAA
3. _GC-01-113-6-10
AACCGGATCT___TTCCGGCCGTCCTTAA
4. _GC-01-113-6-10
AACCGGATCTTTTTCCGGCCGTCCTTAA
5. _GC-01-113-6-10
AACCGGATCTTTTTCCGGCCGTCCTTAA
6. _1610_1
AA_________CT______CC______GTCC___AA
7. _1610_2
AA_________CT______CC______GTCC___AA
8. _1610_3
AA_________CT______CC______GTCC___AA
9. _1610_4
AA_________CT______CC______GTCC___AA
10. _1610_5
AA_________CT______CC______GTCC___AA
11. _RUQ_1299
AAGGGG______AAAA___CC___AAGGAAAC
12. _RUQ_1299
______GGAT__________________GT___TT___
13. _RUQ_1299
AA_________CT______CC______GTCC___AC
 85 86 87 88 89 90 91 92 93 94 95 96   
1. _GC-01-113-6-10
GGTTCCCTCCGGCCCCAGCCAGAAX_XX_X
2. _GC-01-113-6-10
GGTTCCCTCCGGCCCCAGCCAGAAX_XX_X
3. _GC-01-113-6-10
GGTTCCCTGGAGCCCCAACCAGACX_XX_X
4. _GC-01-113-6-10
GGTTCCCTGGAGCCCCAACCAGACX_XX_X
5. _GC-01-113-6-10
GGTTCCCTGGAGCCCCAACCAGACX_XX_X
6. _1610_1
___TT___CTCCGGCC_______________X_XX_X
7. _1610_2
___TT___CTCCGGCC_______________X_XX_X
8. _1610_3
___TT___CTGGAGCC_______________X_XX_X
9. _1610_4
___TT___CTGGAGCC_______________X_XX_X
10. _1610_5
___TT___CTGGAGCC_______________X_XX_X
11. _RUQ_1299
GGAAGGAGGGGGGGCC___CCAGAAX_XX_X
12. _RUQ_1299
______CCCTCCGG__________________X_XX_X
13. _RUQ_1299
___TT___CTCCGGCC_______________X_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._PNG_296 GC-01-113-6-10
Location: Tree: 1
Notes: 1
 Mars, 2018
2._PNG_296 GC-01-113-6-10
Location: Tree: 2
Notes: 2
 Mars, 2018
3._PNG_296 GC-01-113-6-10
Location: Tree: 3
Notes: 3
 Mars, 2018
4._PNG_296 GC-01-113-6-10
Location: Tree: 4
Notes: 4
 Mars, 2018
5._PNG_296 GC-01-113-6-10
Location: Tree: 5
Notes: 5
 Mars, 2018
6._PNG_296
Location: 1610 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
7._PNG_296
Location: 1610 2
 Dapeng Zhang, 2016
8._PNG_296
Location: 1610 3
 Dapeng Zhang, 2016
9._PNG_296
Location: 1610 4
 Dapeng Zhang, 2016
10._PNG_296
Location: 1610 5
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

11._PNG_296 RUQ 1299
Notes: Reading_Collection
 Mars, 2018
12._PNG_296 RUQ 1299
 Dapeng Zhang, 2014
13._PNG_296 RUQ 1299
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133