SNP Profiles of "PNG 218"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-01-108-6-05
GGGGTTGGCCTTCCCTAAGGCCTTGGAA
2. _1605_3
GG___TT_______________AAGGCC______AA
3. _GC-01-108-6-05
GGGGTTGGCCTTCCCTAAGGCCTTGGAA
4. _1605_1
GG___TT_______________AAGGCC______AA
5. _1605_4
GG___TT_______________AAGGCC______AA
6. _GC-01-108-6-05
GGGGTTGGCCTTCCCTAAGGCCTTGGAA
7. _1605_2
GG___TT_______________AAGGCC______AA
8. _GC-01-108-6-05
GGGGTTGGCCTTCCCTAAGGCCTTGGAA
9. _RUQ_1294
GGCCATGGAGAGCCAGAACCAGATGGAA
10. _RUQ_1294
_______________CTCC___AAGGCT___GGAA
11. _RUQ_1294
GG___AT_______________AAGGCT______AA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-01-108-6-05
GGAGGGCTAAAGAGAACTAGGGAACCAA
2. _1605_3
GGAG___CT_________AA______GG______AA
3. _GC-01-108-6-05
GGAGGGCTAAAGAGAACTAGGGAACCAA
4. _1605_1
GGAG___CT_________AA______GG______AA
5. _1605_4
GGAG___CT_________AA______GG______AA
6. _GC-01-108-6-05
GGAGGGCTAAAGAGAACTAGGGAACCAA
7. _1605_2
GGAG___CT_________AA______GG______AA
8. _GC-01-108-6-05
GGAGGGCTAAAGAGAACTAGGGAACCAA
9. _RUQ_1294
CGAGGGAGTTGGAGATAGAGGGAACG___
10. _RUQ_1294
CGAG___CT___GGAGAT____________CGAG
11. _RUQ_1294
CGAG___CT_________AT______GG______AG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-01-108-6-05
___ACCCCCGGTTGGCGCCCCAGCTAGAG
2. _1605_3
______CCCC___TT___CGCC______CTAG___
3. _GC-01-108-6-05
___ACCCCCGGTTGGCGCCCCAGCTAGAG
4. _1605_1
______CCCC___TT___CGCC______CTAG___
5. _1605_4
______CCCC___TT___CGCC______CTAG___
6. _GC-01-108-6-05
___ACCCCCGGTTGGCGCCCCAGCTAGAG
7. _1605_2
______CCCC___TT___CGCC______CTAG___
8. _GC-01-108-6-05
___ACCCCCGGTTGGCGCCCCAGCTAGAG
9. _RUQ_1294
AGAACC___GGACAGGGCCAG___GG___AA
10. _RUQ_1294
______CCCT___GT___GGCCCT___CC______
11. _RUQ_1294
______CCCT___GT___GGCC______CCAA___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-01-108-6-05
AGTTCCGGGGTTGGTTCCGG___CCCGCC
2. _1605_3
_________GG_____________________CC___CC
3. _GC-01-108-6-05
AGTTCCGGGGTTGGTTCCGG___CCCGCC
4. _1605_1
_________GG_____________________CC___CC
5. _1605_4
_________GG_____________________CC___CC
6. _GC-01-108-6-05
AGTTCCGGGGTTGGTTCCGG___CCCGCC
7. _1605_2
_________GG_____________________CC___CC
8. _GC-01-108-6-05
AGTTCCGGGGTTGGTTCCGG___CCCGCC
9. _RUQ_1294
AA______ACGGACACAAACCCGGGG___AG
10. _RUQ_1294
______TTGTGG______TTAC______CCCCTT
11. _RUQ_1294
_________GT_____________________CC___CT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-01-108-6-05
CCGGTTGGCTAACTAGCTTTCGCTAGGG
2. _1605_3
______TTGG___AACTAG_________CTAG___
3. _GC-01-108-6-05
CCGGTTGGCTAACTAGCTTTCGCTAGGG
4. _1605_1
______TTGG___AACTAG_________CTAG___
5. _1605_4
______TTGG___AACTAG_________CTAG___
6. _GC-01-108-6-05
CCGGTTGGCTAACTAGCTTTCGCTAGGG
7. _1605_2
______TTGG___AACTAG_________CTAG___
8. _GC-01-108-6-05
CCGGTTGGCTAACTAGCTTTCGCTAGGG
9. _RUQ_1294
GGGGAAGGAGAAAGAG___AG___AGGGAC
10. _RUQ_1294
___-_______________AGTT______CT___GT
11. _RUQ_1294
______TTGG___AACTAG_________CTGG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-01-108-6-05
AACCGGTTCTTTTTCCGGCCGTCTTT___
2. _1605_3
AA_________CT______CC______GTCT______
3. _GC-01-108-6-05
AACCGGTTCTTTTTCCGGCCGTCTTTCC
4. _1605_1
AA_________CT______CC______GTCT______
5. _1605_4
AA_________CT______CC______GTCT______
6. _GC-01-108-6-05
AACCGGTTCTTTTTCCGGCCGTCTTT___
7. _1605_2
AA_________CT______CC______GTCT___CC
8. _GC-01-108-6-05
AACCGGTTCTTTTTCCGGCCGTCTTT___
9. _RUQ_1294
AAGGGG______AAAA___AC___AAGGAAAA
10. _RUQ_1294
______GGAT__________________TT___TT___
11. _RUQ_1294
AA_________CT______CC______TTCC___AA
 85 86 87 88 89 90 91 92 93 94 95 96   
1. _GC-01-108-6-05
GGTTCCTTCCAGCCCCAGCCAGACX_XX_X
2. _1605_3
___TT___TTCCAGCC_______________X_XX_X
3. _GC-01-108-6-05
GGTTCCTTCCAGCCCCAGCCAGACX_XX_X
4. _1605_1
___TT___TTCCAGCC_______________X_XX_X
5. _1605_4
___TT___TTCCAGCC_______________X_XX_X
6. _GC-01-108-6-05
GGTTCCTTCCAGCCCCAGCCAGACX_XX_X
7. _1605_2
___TT___TTCCAGCC_______________X_XX_X
8. _GC-01-108-6-05
GGTTCCTTCCAGCCCCAGCCAGACX_XX_X
9. _RUQ_1294
GGAAGGAACCAGGGCC___CCAAAAX_XX_X
10. _RUQ_1294
______CCTTGGAG__________________X_XX_X
11. _RUQ_1294
___TT___TTGGAGCC_______________X_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._PNG_218 GC-01-108-6-05
Location: Tree: 4
Notes: 4
 Mars, 2018
2._PNG_218
Location: 1605 3
 Dapeng Zhang, 2016
3._PNG_218 GC-01-108-6-05
Location: Tree: 2
Notes: 2
 Mars, 2018
4._PNG_218
Location: 1605 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
5._PNG_218
Location: 1605 4
 Dapeng Zhang, 2016
6._PNG_218 GC-01-108-6-05
Location: Tree: 3
Notes: 3
 Mars, 2018
7._PNG_218
Location: 1605 2
 Dapeng Zhang, 2016
8._PNG_218 GC-01-108-6-05
Location: Tree: 1
Notes: 1
 Mars, 2018

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

9._PNG_218 RUQ 1294
Notes: Reading_Collection
 Mars, 2018
10._PNG_218 RUQ 1294
 Dapeng Zhang, 2014
11._PNG_218 RUQ 1294
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133