SNP Profiles of "PNG 215"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-01-084-5-01
______GGGGAT___GG______TTCCCCCT___
2. _GC-01-084-5-01
______GGGGAT___GG______TTCCCCCT___
3. _GC-01-084-5-01
______GGGGAT___GG______TTCCCCCT___
4. _GC-01-084-5-01
______GGGGAT___GG______TTCCCCCT___
5. _GC-01-107-6-04
______GGGGAT___GG______TTCCCCCT___
6. _GC-01-107-6-04
______GGGGAT___GG______TTCCCCCT___
7. _GC-01-107-6-04
______GGGGAT___GG______TTCCCCCT___
8. _GC-01-107-6-04
______GGGGAT___GG______TTCCCCCT___
9. _GC-01-107-6-04
______GGGGAT___GG______TTCCCCCT___
10. _1501_1
______GG___AT___________________________
11. _1501_2
______GG___AT___________________________
12. _1501_3
______GG___AT___________________________
13. _1501_4
______GG___AT___________________________
14. _1604_1
______GG___AT___________________________
15. _1604_2
______GG___AT___________________________
16. _1604_3
______GG___AT___________________________
17. _1604_4
______GG___AT___________________________
18. _1604_5
______GG___AT___________________________
19. _RUQ_1293
CTCC_________TT___ACGG____________GT
20. _RUQ_1293
______GGCCAT___GG______AAGGCCAG___
21. _RUQ_1293
______________________________CCCC______
22. _RUQ_1293
______GG___AT___________________________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-01-084-5-01
___ACGGCTATGG______AA___GGAGGGCC
2. _GC-01-084-5-01
___ACGGCTATGG______AA___GGAGGGCC
3. _GC-01-084-5-01
___ACGGCTATGG______AA___GGAGGGCC
4. _GC-01-084-5-01
___ACGGCTATGG______AA___GGAGGGCC
5. _GC-01-107-6-04
___ACGGCTATGG______AA___GGAGGGCC
6. _GC-01-107-6-04
___ACGGCTATGG______AA___GGAGGGCC
7. _GC-01-107-6-04
___ACGGCTATGG______AA___GGAGGGCC
8. _GC-01-107-6-04
___ACGGCTATGG______AA___GGAGGGCC
9. _GC-01-107-6-04
___ACGGCTATGG______AA___GGAGGGCC
10. _1501_1
___ACGGCT____________AA___GGAG___CC
11. _1501_2
___ACGGCT____________AA___GGAG___CC
12. _1501_3
___ACGGCT____________AA___GGAG___CC
13. _1501_4
___ACGGCT____________AA___GGAG___CC
14. _1604_1
___ACGGCT____________AA___GGAG___CC
15. _1604_2
___ACGGCT____________AA___GGAG___CC
16. _1604_3
___ACGGCT____________AA___GGAG___CC
17. _1604_4
___ACGGCT____________AA___GGAG___CC
18. _1604_5
___ACGGCT____________AA___GGAG___CC
19. _RUQ_1293
AAAC____________CTGG___TT___AG______
20. _RUQ_1293
___ACCCAGATGG______AA___CCAGGGGG
21. _RUQ_1293
___ACGGCT___GG______AA___GGAG___CC
22. _RUQ_1293
___ACGGCT____________AA___GGAG___CC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-01-084-5-01
______AAAG___AGATCCAG___GGAACGAA
2. _GC-01-084-5-01
______AAAG___AGATCCAG___GGAACGAA
3. _GC-01-084-5-01
______AAAG___AGATCC______GGAACGAA
4. _GC-01-084-5-01
______AAAG___AGATCCAG___GGAACGAA
5. _GC-01-107-6-04
______AAAG___AGATCCAG___GGAACGAA
6. _GC-01-107-6-04
______AAAG___AGATCCAG___GGAACGAA
7. _GC-01-107-6-04
______AAAG___AGATCCAG___GGAACGAA
8. _GC-01-107-6-04
______AAAG___AGATCCAG___GGAACGAA
9. _GC-01-107-6-04
______AAAG___AGATCCAG___GGAACGAA
10. _1501_1
__________________AT_________GG______AA
11. _1501_2
__________________AT_________GG______AA
12. _1501_3
__________________AT_________GG______AA
13. _1501_4
__________________AT_________GG______AA
14. _1604_1
__________________AT_________GG______AA
15. _1604_2
__________________AT_________GG______AA
16. _1604_3
__________________AT_________GG______AA
17. _1604_4
__________________AT_________GG______AA
18. _1604_5
__________________AT_________GG______AA
19. _RUQ_1293
TTAC___AGAC____________CT____________
20. _RUQ_1293
______TTAG___AGATGGAG___GGAACG___
21. _RUQ_1293
_________AG___AGAT_______________CGAA
22. _RUQ_1293
__________________AT_________GG______AA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-01-084-5-01
______AC___CCCT___GGGTAACC___CCCT
2. _GC-01-084-5-01
______AC___CCCT___GGGTAACC___CCCT
3. _GC-01-084-5-01
______AC___CCCT___GGGTAACC___CCCT
4. _GC-01-084-5-01
______AC___CCCT___GGGTAACC___CCCT
5. _GC-01-107-6-04
______AC___CCCT___GGGTAACC___CCCT
6. _GC-01-107-6-04
______AC___CCCT___GGGTAACC___CCCT
7. _GC-01-107-6-04
______AC___CCCT___GGGTAACC___CCCT
8. _GC-01-107-6-04
______AC___CCCT___GGGTAACC___CCCT
9. _GC-01-107-6-04
______AC___CCCT___GGGTAACC___CCCT
10. _1501_1
____________CCCT______GT___CC___CC___
11. _1501_2
____________CCCT______GT___CC___CC___
12. _1501_3
____________CCCT______GT___CC___CC___
13. _1501_4
____________CCCT______GT___CC___CC___
14. _1604_1
____________CCCT______GT___CC___CC___
15. _1604_2
____________CCCT______GT___CC___CC___
16. _1604_3
____________CCCT______GT___CC___CC___
17. _1604_4
____________CCCT______GT___CC___CC___
18. _1604_5
____________CCCT______GT___CC___CC___
19. _RUQ_1293
___CC___CTAC___AA_________CCAACCCT
20. _RUQ_1293
GG___AC___CC______GGACAACC___CCAG
21. _RUQ_1293
____________CCCT______GT___CC___CCCT
22. _RUQ_1293
____________CCCT______GT___CC___CC___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-01-084-5-01
AGCC_________AAGG___AATTCCGTGG___
2. _GC-01-084-5-01
AGCC_________AAGG___AATTCCGTGG___
3. _GC-01-084-5-01
AGCC_________AAGG___AATTCCGTGG___
4. _GC-01-084-5-01
AGCC_________AAGG___AATTCCGTGG___
5. _GC-01-107-6-04
AGCC_________AAGG___AATTCCGTGG___
6. _GC-01-107-6-04
AGCC_________AAGG___AATTCCGTGG___
7. _GC-01-107-6-04
AGCC_________AAGG___AATTCCGTGG___
8. _GC-01-107-6-04
AGCC_________AAGG___AATTCCGTGG___
9. _GC-01-107-6-04
AGCC_________AAGG___AATTCCGTGG___
10. _1501_1
___CC_________AA_______________GT______
11. _1501_2
___CC_________AA_______________GT______
12. _1501_3
___CC_________AA_______________GT______
13. _1501_4
___CC_________AA_______________GT______
14. _1604_1
___CC_________AA_______________GT______
15. _1604_2
___CC_________AA_______________GT______
16. _1604_3
___CC_________AA_______________GT______
17. _1604_4
___CC_________AA_______________GT______
18. _1604_5
___CC_________AA_______________GT______
19. _RUQ_1293
______TTAGCCAA___CC______TTGTGGCT
20. _RUQ_1293
___GG____________AA___GG______ACGG___
21. _RUQ_1293
___CC________________________TTGTGG___
22. _RUQ_1293
___CC_________AA_______________GT______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-01-084-5-01
TTGTGT___AC___GG___CCCGCCCCGGTT
2. _GC-01-084-5-01
TTGTGT___AC___GG___CCCGCCCCGGTT
3. _GC-01-084-5-01
TTGTGT___AC___GG___CCCGCCCCGGTT
4. _GC-01-084-5-01
TTGTGT___AC___GG___CCCGCCCCGGTT
5. _GC-01-107-6-04
TTGTGT___AC___GG___CCCGCCCCGGTT
6. _GC-01-107-6-04
TTGTGT___AC___GG___CCCGCCCCGGTT
7. _GC-01-107-6-04
TTGTGT___AC___GG___CCCGCCCCGGTT
8. _GC-01-107-6-04
TTGTGT___AC___GG___CCCGCCCCGGTT
9. _GC-01-107-6-04
TTGTGT___AC___GG___CCCGCCCCGGTT
10. _1501_1
________________________CC___CC______TT
11. _1501_2
________________________CC___CC______TT
12. _1501_3
________________________CC___CC______TT
13. _1501_4
________________________CC___CC______TT
14. _1604_1
________________________CC___CC______TT
15. _1604_2
________________________CC___CC______TT
16. _1604_3
________________________CC___CC______TT
17. _1604_4
________________________CC___CC______TT
18. _1604_5
________________________CC___CC______TT
19. _RUQ_1293
_________CTACAATT___CC_________GG___
20. _RUQ_1293
AAACAC___AC___CCGGGG___GGGGGGAA
21. _RUQ_1293
______GT___AC_________CCCGCC___-___
22. _RUQ_1293
________________________CC___CC______TT
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1. _GC-01-084-5-01
GGCT___AACCAACT______CTCG___CTAA
2. _GC-01-084-5-01
GGCT___AACCAACT______CTCG___CTAA
3. _GC-01-084-5-01
GGCT___AACCAACC______CTCG___CTAA
4. _GC-01-084-5-01
GGCT___AACCAACT______CTCG___CTAA
5. _GC-01-107-6-04
GGCT___AACCAACT______CTCG___CTAA
6. _GC-01-107-6-04
GGCT___AACCAACT______CTCG___CTAA
7. _GC-01-107-6-04
GGCT___AACCAACT______CTCG___CTAA
8. _GC-01-107-6-04
GGCT___AACCAACT______CTCG___CTAA
9. _GC-01-107-6-04
GGCT___AACCAACT______CTCG___CTAA
10. _1501_1
GG______AACCAA__________________CTAA
11. _1501_2
GG______AACCAA__________________CTAA
12. _1501_3
GG______AACCAA__________________CTAA
13. _1501_4
GG______AACCAA__________________CTAA
14. _1604_1
GG______AACCAA__________________CTAA
15. _1604_2
GG______AACCAA__________________CTAA
16. _1604_3
GG______AACCAA__________________CTAA
17. _1604_4
GG______AACCAA__________________CTAA
18. _1604_5
GG______AACCAA__________________CTAA
19. _RUQ_1293
______CG______AACTTTTT______CC___AA
20. _RUQ_1293
GGAG___AAGGAA_________AG______AGAA
21. _RUQ_1293
_______________AA-_______________CT___
22. _RUQ_1293
GG______AACCAA__________________CTAA
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1. _GC-01-084-5-01
GGAACCAG___TTCTTTTTCCGT_________
2. _GC-01-084-5-01
GGAACCAG___TTCTTTTTCCGT_________
3. _GC-01-084-5-01
GGAACCAG___TTCTTTTTCCGT_________
4. _GC-01-084-5-01
GGAACCAG___TTCTTTTTCCGT_________
5. _GC-01-107-6-04
GGAACCAG___TTCTTTTTCCGT_________
6. _GC-01-107-6-04
GGAACCAG___TTCTTTTTCCGT_________
7. _GC-01-107-6-04
GGAACCAG___TTCTTTTTCCGT_________
8. _GC-01-107-6-04
GGAACCAG___TTCTTTTTCCGT_________
9. _GC-01-107-6-04
GGAACCAG___TTCTTTTTCCGT_________
10. _1501_1
___AA____________CT______CC____________
11. _1501_2
___AA____________CT______CC____________
12. _1501_3
___AA____________CT______CC____________
13. _1501_4
___AA____________CT______CC____________
14. _1604_1
___AA____________CT______CC____________
15. _1604_2
___AA____________CT______CC____________
16. _1604_3
___AA____________CT______CC____________
17. _1604_4
___AA____________CT______CC____________
18. _1604_5
___AA____________CT______CC____________
19. _RUQ_1293
____________CT___CT____________GTACCC
20. _RUQ_1293
CCAAGGAG_________AAAA___AC_________
21. _RUQ_1293
GG______AG___TT________________________
22. _RUQ_1293
___AA____________CT______CC____________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1. _GC-01-084-5-01
ACGTCT______TTAAGG______TTCTCTGG
2. _GC-01-084-5-01
ACGTCT______TTAAGG______TTCTCTGG
3. _GC-01-084-5-01
ACGTCT______TTAAGG______TTCTCTGG
4. _GC-01-084-5-01
ACGTCT______TTAAGG______TTCTCTGG
5. _GC-01-107-6-04
ACGTCT______TTAAGG______TTCTCTGG
6. _GC-01-107-6-04
ACGTCT______TTAAGG______TTCTCTGG
7. _GC-01-107-6-04
ACGTCT______TTAAGG______TTCTCTGG
8. _GC-01-107-6-04
ACGTCT______TTAAGG______TTCTCTGG
9. _GC-01-107-6-04
ACGTCT______TTAAGG______TTCTCTGG
10. _1501_1
___GTCT_________AA_________TT___CTGG
11. _1501_2
___GTCT_________AA_________TT___CTGG
12. _1501_3
___GTCT_________AA_________TT___CTGG
13. _1501_4
___GTCT_________AA_________TT___CTGG
14. _1604_1
___GTCT_________AA_________TT___CTGG
15. _1604_2
___GTCT_________AA_________TT___CTGG
16. _1604_3
___GTCT_________AA_________TT___CTGG
17. _1604_4
___GTCT_________AA_________TT___CTGG
18. _1604_5
___GTCT_________AA_________TT___CTGG
19. _RUQ_1293
___GT___TTTT_________AGGG_________GG
20. _RUQ_1293
___AAAG______AGACGG______AAAGAGCC
21. _RUQ_1293
___GT_________CT_______________CTCTGG
22. _RUQ_1293
___GTCT_________AC_________TT___CTGG
 127 128 129 130 131 132 133 134 135      
1. _GC-01-084-5-01
GGCT______CCAGCCAGAAX_XX_XX_XX_XX_X
2. _GC-01-084-5-01
GGCT______CCAGCCAG___X_XX_XX_XX_XX_X
3. _GC-01-084-5-01
GGCT______CCAGCCAGAAX_XX_XX_XX_XX_X
4. _GC-01-084-5-01
GGCT______CCAGCCAGAAX_XX_XX_XX_XX_X
5. _GC-01-107-6-04
GGCT______CCAGCCAGAAX_XX_XX_XX_XX_X
6. _GC-01-107-6-04
GGCT______CCAGCCAGAAX_XX_XX_XX_XX_X
7. _GC-01-107-6-04
GGCT______CCAGCCAGAAX_XX_XX_XX_XX_X
8. _GC-01-107-6-04
GGCT______CCAGCCAGAAX_XX_XX_XX_XX_X
9. _GC-01-107-6-04
GGCT______CCAGCCAGAAX_XX_XX_XX_XX_X
10. _1501_1
GGCT_____________________X_XX_XX_XX_XX_X
11. _1501_2
GGCT_____________________X_XX_XX_XX_XX_X
12. _1501_3
GGCT_____________________X_XX_XX_XX_XX_X
13. _1501_4
GGCT_____________________X_XX_XX_XX_XX_X
14. _1604_1
GGCT_____________________X_XX_XX_XX_XX_X
15. _1604_2
GGCT_____________________X_XX_XX_XX_XX_X
16. _1604_3
GGCT_____________________X_XX_XX_XX_XX_X
17. _1604_4
GGCT_____________________X_XX_XX_XX_XX_X
18. _1604_5
GGCT_____________________X_XX_XX_XX_XX_X
19. _RUQ_1293
______TTTT_______________X_XX_XX_XX_XX_X
20. _RUQ_1293
GGAG______CC___CCAGAAX_XX_XX_XX_XX_X
21. _RUQ_1293
GG________________________X_XX_XX_XX_XX_X
22. _RUQ_1293
GGCT_____________________X_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._PNG_215 GC-01-084-5-01
Location: Tree: 1
Notes: 1
 Mars, 2018
2._PNG_215 GC-01-084-5-01
Location: Tree: 2
Notes: 2
 Mars, 2018
3._PNG_215 GC-01-084-5-01
Location: Tree: 3
Notes: 3
 Mars, 2018
4._PNG_215 GC-01-084-5-01
Location: Tree: 4
Notes: 4
 Mars, 2018
5._PNG_215 GC-01-107-6-04
Location: Tree: 1
Notes: 1
 Mars, 2018
6._PNG_215 GC-01-107-6-04
Location: Tree: 2
Notes: 2
 Mars, 2018
7._PNG_215 GC-01-107-6-04
Location: Tree: 3
Notes: 3
 Mars, 2018
8._PNG_215 GC-01-107-6-04
Location: Tree: 4
Notes: 4
 Mars, 2018
9._PNG_215 GC-01-107-6-04
Location: Tree: 5
Notes: 5
 Mars, 2018
10._PNG_215
Location: 1501 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
11._PNG_215
Location: 1501 2
 Dapeng Zhang, 2016
12._PNG_215
Location: 1501 3
 Dapeng Zhang, 2016
13._PNG_215
Location: 1501 4
 Dapeng Zhang, 2016
14._PNG_215
Location: 1604 1
 Dapeng Zhang, 2016
15._PNG_215
Location: 1604 2
 Dapeng Zhang, 2016
16._PNG_215
Location: 1604 3
 Dapeng Zhang, 2016
17._PNG_215
Location: 1604 4
 Dapeng Zhang, 2016
18._PNG_215
Location: 1604 5
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

19._PNG_215 RUQ 1293
 Lambert Motilal, 2023
20._PNG_215 RUQ 1293
Notes: Reading_Collection
 Mars, 2018
21._PNG_215 RUQ 1293
 Dapeng Zhang, 2014
22._PNG_215 RUQ 1293
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1237 113TcSNP1242 114TcSNP1253 115TcSNP1270
116TcSNP1275 117TcSNP1293 118TcSNP1309 119TcSNP1350 120TcSNP1383
121TcSNP1401 122TcSNP1404 123TcSNP1414 124TcSNP1439 125TcSNP1442
126TcSNP1458 127TcSNP1484 128TcSNP1520 129TcSNP1524 130TcSNP1527
131Tcm001s00947643 132Tcm002s20575712 133Tcm003s01336581 134Tcm003s07402719 135Tcm006s26664133