SNP Profiles of "CCN 51"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _7121_10
GG___TT_______________ACTTCC______AA
2. _GC-07-019-1-21
GGGGTTGGCTTTACCTACTTCC___AGAA
3. _7121_4_>_FP
GG___TT_______________ACTTCC______AA
4. _GC-07-019-1-21
GGGGTTGGCTTTACCTACTTCCATAGAA
5. _GC-07-019-1-21
GGGGTTGGCTTTACCTACTTCC___AGAA
6. _7121_14
GG___TT_______________ACTTCC______AA
7. _GC-07-019-1-21
GGGGTTGGCTTTACCTACTTCCATAGAA
8. _7121_12
GG___TT_______________ACTTCC______AA
9. _GC-06-4-1-04
GGGGTTGGCTTTACCTACTTCC___AGAA
10. _7121_6_>_FP
GG___TT_______________ACTTCC______AA
11. _GC-07-019-1-21
GGGGTTGGCT___ACCTACTTCC___AGAA
12. _7121_3_>_FP
GG___TT_______________ACTTCC______AA
13. _GC-07-019-1-21
GGGGTTGGCTTTACCTACTTCCATAGAA
14. _GC-07-19-1-21
GGCCTTGGAGAAACAGACAAGGATAGAA
15. _7121_13
GG___TT_______________ACTTCC______AA
16. _GC-07-019-1-21
GGGGTTGGCTTTACCTACTTCCATAGAA
17. _Cabiria
GG___AA_______________AAGGTT______CC
18. _CCN_51
GG___TT_______________ACTTCC______AA
19. _RUQ_1347
CG___AT_______________CCGTCT______AC
20. _RUQ_1736
GGCCTTGGAGAAACAGACAAGGATAGAA
21. _MITC-000000
GGCCTTGGAGAAACAGACAAGGATAGAA
22. _CCN_51
GG___TT_______________ACTTCC______AA
23. _CCN_51
GG___TT_______________ACTTCC______AA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _7121_10
CGAA___CT_________AA______GG______AG
2. _GC-07-019-1-21
CGAA___CTAAAGAGAACT___GGAACCAG
3. _7121_4_>_FP
CGAA___CT_________AA______GG______AG
4. _GC-07-019-1-21
CGAAGGCTAAAGAGAACTAGGGAACCAG
5. _GC-07-019-1-21
CGAA___CTAAAGAGAACTAGGG___CCAG
6. _7121_14
CGAA___CT_________AA______GG______AG
7. _GC-07-019-1-21
CGAAGGCTAAAGAGAACTAGGGAACCAG
8. _7121_12
CGAA___CT_________AA______GG______AG
9. _GC-06-4-1-04
___AA___CTAAAGAGAACTAGGGAACCAG
10. _7121_6_>_FP
CGAA___CT_________AA______GG______AG
11. _GC-07-019-1-21
CGAA___CTAAAGAGAACTAGGG___CCAG
12. _7121_3_>_FP
CGAA___CT_________AA______GG______AG
13. _GC-07-019-1-21
CGAAGGCTAAAGAGAACTAGGGAACCAG
14. _GC-07-19-1-21
CGAAGGAGTTAGAGAAAGAGGGAAGG___
15. _7121_13
CGAA___CT_________AA______GG______AG
16. _GC-07-019-1-21
CGAAGGCTAAAGAGAACTAGGGAACCAG
17. _Cabiria
GGGG___TT_________TT______GG______GG
18. _CCN_51
CGAA___CT_________AA______GG______AG
19. _RUQ_1347
CCAG___CC_________AA______AG______AG
20. _RUQ_1736
CGAAGGAGTTAGAGAAAGAGGGAAGG___
21. _MITC-000000
CGAAGGAGTTAGAGAAAGAGGGAAGG___
22. _CCN_51
CGAA___CT_________AA______GG______AG
23. _CCN_51
CGAA___CT_________AA______GG______AG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _7121_10
______ACCT___TT___CCCC______CTAG___
2. _GC-07-019-1-21
CTACACCTAGTTAGCC___CCGGCTAGAA
3. _7121_4_>_FP
______ACCT___TT___CCCC______CTAG___
4. _GC-07-019-1-21
___ACACCTAGTTAGCCCCCCGGCTAGAA
5. _GC-07-019-1-21
CTACACCTAGTTAGCCCCCCGGCTAGAA
6. _7121_14
______ACCT___TT___CCCC______CTAG___
7. _GC-07-019-1-21
___ACACCTAGTTAGCCCCCCGGCTAGAA
8. _7121_12
______ACCT___TT___CCCC______CTAG___
9. _GC-06-4-1-04
CTACACCTAGTTAGCCCCCCGGCTAGAA
10. _7121_6_>_FP
______ACCT___TT___CC_________CTAG___
11. _GC-07-019-1-21
CTACACCTAGTTAGCCCCCCGGCTAGAA
12. _7121_3_>_FP
______ACCT___TT___CCCC______CTAG___
13. _GC-07-019-1-21
___ACACCTAGTTAGCCCCCCGGCTAGAA
14. _GC-07-19-1-21
AGACAC___AGAAAGCCCCGG___AG___AG
15. _7121_13
______ACCT___TT___CCCC______CTAG___
16. _GC-07-019-1-21
___ACACCTAGTTAGCCCCCCGGCTAGAA
17. _Cabiria
______CCCC___GG___CCCC______CCGG___
18. _CCN_51
______ACCT___TT___CCCC______CTAG___
19. _RUQ_1347
______ACCT___GT___CGCC______CTGG___
20. _RUQ_1736
AGACAC___AGAAAGCCCCGG___AG___AG
21. _MITC-000000
AGACAC___AGAAAGCCCCGG___AG___AG
22. _CCN_51
______ACCT___TT___CCCC______CTAG___
23. _CCN_51
______ACCT___TT___CCCC______CTAG___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _7121_10
_________GG_____________________CC___CC
2. _GC-07-019-1-21
AGTT___GGGGGTGTGTCCCGAA___CGCC
3. _7121_4_>_FP
_________GG_____________________CC___CC
4. _GC-07-019-1-21
AGTTCCGGGGGTGTGTCCCGAACCCGCC
5. _GC-07-019-1-21
AG___CCGGGGGTGTGTCCCGAACCCGCC
6. _7121_14
_________GG_____________________CC___CC
7. _GC-07-019-1-21
AGTTCCGGGGGTGTGTCCCGAACCCGCC
8. _7121_12
_________GG_____________________CC___CC
9. _GC-06-4-1-04
AGTTCCGGGGGTGTGTCCCGAACCCGCC
10. _7121_6_>_FP
_________GG___________________________CC
11. _GC-07-019-1-21
AGTTCCGGGGGTGTGTCCCGAACCCGCC
12. _7121_3_>_FP
_________GG_____________________CC___CC
13. _GC-07-019-1-21
AGTTCCGGGGGTGTGTCCCGAACCCGCC
14. _GC-07-19-1-21
AA______CCGGACACACCCCGAGGG___GG
15. _7121_13
_________GG_____________________CC___CC
16. _GC-07-019-1-21
AGTTCCGGGGGTGTGTCCCGAACCCGCC
17. _Cabiria
_________TT_____________________CC___CC
18. _CCN_51
_________GG_____________________CC___CC
19. _RUQ_1347
_________GG_____________________CC___CT
20. _RUQ_1736
AA______CCGGACACACCCCGAGGG___GG
21. _MITC-000000
AA______CCGGACACACCCCGAGGG___GG
22. _CCN_51
_________GG_____________________CC___CC
23. _CCN_51
_________GG_____________________CC___CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _7121_10
______CTGG___AATTAA_________CTAG___
2. _GC-07-019-1-21
CCAGCTGGCTAATTAACCTTCGCT___GT
3. _7121_4_>_FP
______CT______AATTAA_________CTAG___
4. _GC-07-019-1-21
CCAGCTGGCTAATTAACCTTCGCTAGGT
5. _GC-07-019-1-21
CCAGCTGGCTAATTAACCTTCGCTAGGT
6. _7121_14
______CTGG___AATTAA_________CTAG___
7. _GC-07-019-1-21
CCAGCTGGCTAATTAACCTTCGCTAGGT
8. _7121_12
______CTGG___AATTAA_________CTAG___
9. _GC-06-4-1-04
CCAGCTGGCTAATTAACCTTCGCTAGGT
10. _7121_6_>_FP
______CTGG___AATTAA_________CT______
11. _GC-07-019-1-21
CCAGCT___CTAATTAACCTTCGCTAGGT
12. _7121_3_>_FP
______CTGG___AATTAA_________CTAG___
13. _GC-07-019-1-21
CCAGCTGGCTAATTAACCTTCGCTAGGT
14. _GC-07-19-1-21
GGAGAGGGAGAAAAAA___AA___AGAGAC
15. _7121_13
______CTGG___AATTAA_________CTAG___
16. _GC-07-019-1-21
CCAGCTGGCTAATTAACCTTCGCTAGGT
17. _Cabiria
______TTGG___AACCAA_________TTAA___
18. _CCN_51
______CTGG___AATTAA_________CTAG___
19. _RUQ_1347
______CTGG___ATCTAA_________CTAG___
20. _RUQ_1736
GGAGAGGGAGAAAAAA___AA___AGAGAC
21. _MITC-000000
GGAGAGGGAGAAAAAA___AA___AGAGAC
22. _CCN_51
______CTGG___AACTAA_________CTAG___
23. _CCN_51
______CTGG___AACTAA_________CTAG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _7121_10
AA_________CT______CC______TTCT___AC
2. _GC-07-019-1-21
AACCAGATCT___TTCC___CCTTCTTTAC
3. _7121_4_>_FP
AA_________CT______CC______TTCT___AC
4. _GC-07-019-1-21
AACCAGATCTTT___CCGGCCTTCTTTAC
5. _GC-07-019-1-21
AACCAGATCTTTTTCCGGCCTTCTTTAC
6. _7121_14
AA_________CT______CC______TTCT___AC
7. _GC-07-019-1-21
AACCAGATCTTTTTCCGGCCTTCTTTAC
8. _7121_12
AA_________CT______CC______TTCT___AC
9. _GC-06-4-1-04
AACCAGATCTTTTTCCGGCCTTCTTTAC
10. _7121_6_>_FP
AA_________CT______CC______TTCT___AC
11. _GC-07-019-1-21
AACCAGATCTTTTTCCGGCCTTCTTTAC
12. _7121_3_>_FP
AA_________CT______CC______TTCT___AC
13. _GC-07-019-1-21
AACCAGATCTTTTTCCGGCCTTCTTTAC
14. _GC-07-19-1-21
AAGGAG______AAAA___CC___AAAGAAAC
15. _7121_13
AA_________CT______CC______TTCT___AC
16. _GC-07-019-1-21
AACCAGATCTTTTTCCGGCCTTCTTTAC
17. _Cabiria
AA_________CC______TT______GGCC___AA
18. _CCN_51
AA_________CT______CC______TTCT___AC
19. _RUQ_1347
AT_________CT______CC______TTTT___AC
20. _RUQ_1736
AAGGAG______AAAA___CC___AAAGAAAC
21. _MITC-000000
AAGGAG______AAAA___CC___AAAGAAAC
22. _CCN_51
AA_________CT______CC______TTCT___AC
23. _CCN_51
AA_________CT______CC______TTCT___AC
 85 86 87 88 89 90 91 92 93 94 95 96   
1. _7121_10
___TT___TTGGAGCT_______________X_XX_X
2. _GC-07-019-1-21
GGTTCTTTGGAGCTCCAGACAGAAX_XX_X
3. _7121_4_>_FP
___TT___TTGGAGCT_______________X_XX_X
4. _GC-07-019-1-21
GGTTCTTTGGAGCTCCAGACAGAAX_XX_X
5. _GC-07-019-1-21
GGTTCTTTGGAGCTCC___ACAGAAX_XX_X
6. _7121_14
___TT___TTGGAGCT_______________X_XX_X
7. _GC-07-019-1-21
GGTTCTTTGGAGCTCCAGACAGAAX_XX_X
8. _7121_12
___TT___TTGGAGCT_______________X_XX_X
9. _GC-06-4-1-04
GGTTCTTTGGAGCTCCAGACAGAAX_XX_X
10. _7121_6_>_FP
___TT___TTGGAGCT_______________X_XX_X
11. _GC-07-019-1-21
GGTTCTTTGGAGCTCC___ACAGAAX_XX_X
12. _7121_3_>_FP
___TT___TTGGAGCT_______________X_XX_X
13. _GC-07-019-1-21
GGTTCTTTGGAGCTCCAGACAGAAX_XX_X
14. _GC-07-19-1-21
GGAAAGAACCAGAGCC___ACAGAAX_XX_X
15. _7121_13
___TT___TTGGAGCT_______________X_XX_X
16. _GC-07-019-1-21
GGTTCTTTGGAGCTCCAGACAGAAX_XX_X
17. _Cabiria
___TT___TTCCGGCC_______________X_XX_X
18. _CCN_51
___TT___TTGGAGCT_______________X_XX_X
19. _RUQ_1347
___CT___CTCGAGCT_______________X_XX_X
20. _RUQ_1736
GGAAAGAACCAGAGCC___ACAGAAX_XX_X
21. _MITC-000000
GGAAAGAACCAGAGCC___ACAGAAX_XX_X
22. _CCN_51
___TT___TTGGAGCT_______________X_XX_X
23. _CCN_51
___TT___TTGGAGCT_______________X_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._CCN_51
Location: 7121 10
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
2._CCN_51 GC-07-019-1-21
Location: Field: 7, Block: 1, Rep: 21, Tree: PL6
Notes: PL6 FP4
 Mars, 2018
3._CCN_51
Location: 7121 4 > FP
 Dapeng Zhang, 2016
4._CCN_51 GC-07-019-1-21
Location: Tree: 14
Notes: 14
 Mars, 2018
5._CCN_51 GC-07-019-1-21
Location: Field: 7, Block: 1, Rep: 21, Tree: PL3
Notes: PL3 FP1
 Mars, 2018
6._CCN_51
Location: 7121 14
 Dapeng Zhang, 2016
7._CCN_51 GC-07-019-1-21
Location: Tree: 12
Notes: 12
 Mars, 2018
8._CCN_51
Location: 7121 12
 Dapeng Zhang, 2016
9._CCN_51 GC-06-4-1-04
Location: Field: 6, Block: 1, Rep: 4, Tree: PL7
Notes: PL7 FP
 Mars, 2018
10._CCN_51
Location: 7121 6 > FP
 Dapeng Zhang, 2016
11._CCN_51 GC-07-019-1-21
Location: Field: 7, Block: 1, Rep: 21, Tree: PL4
Notes: PL4 FP2
 Mars, 2018
12._CCN_51
Location: 7121 3 > FP
 Dapeng Zhang, 2016
13._CCN_51 GC-07-019-1-21
Location: Tree: 13
Notes: 13
 Mars, 2018
14._CCN_51 GC-07-19-1-21
Location: Field: 7, Block: 1, Rep: 21, Tree: 3 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018
15._CCN_51
Location: 7121 13
 Dapeng Zhang, 2016
16._CCN_51 GC-07-019-1-21
Location: Tree: 10
Notes: 10
 Mars, 2018

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

17._CCN_51
Location: Cabiria
 Dapeng Zhang, 2016

Estation Experimental Tropical Pichilingue Ecuador

18._CCN_51
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

19._CCN_51 RUQ 1347
 Dapeng Zhang, 2016
20._CCN_51 RUQ 1736
Notes: Reading_Collection
 Mars, 2018

USDA-SHRS United States of America

21._CCN_51 MITC-000000
 Mars, 2018

USASPC

22._CCN_51
 Dapeng Zhang, 2016

USASPC

23._CCN_51
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133