SNP Profiles of "MAN 15 /2 [BRA]"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-05-072-2-23
______GGGGAT___GG______CCTTCCCT___
2. _GC-05-072-2-23
______GGGGAT___GG______CCTTCCCT___
3. _GC-05-072-2-23
______GGGGAT___GG______CCTTCCCT___
4. _GC-05-072-2-23
______GGGGAT___GG______CCTTCCCT___
5. _GC-05-072-2-23
______GGGGAT___GG______CCTTCCCT___
6. _5223_4
______GG___AT___________________________
7. _5223_1_>_FP
______GG___AT___________________________
8. _5223_2_>_FP
______GG___AT___________________________
9. _5223_3_>_FP
______GG___AT___________________________
10. _5223_5_>_FP
______GG___AT___________________________
11. _MAN15/2[BRA]
__________________________________________
12. _RUQ_86
______GG___AT___________________________
13. _RUQ_86
TTCC_________CT___CCGG____________TT
14. _RUQ_86
______GGCCAT___GG______GGAACCAG___
15. _RUQ_86
______________________________TTCC______
16. _La_Montaña_Lot_6_Row_53_46-48
______GG___TT___________________________
17. _C0297
______GG___AT___________________________
18. _5A_N3/476_T2
______GG___AT___________________________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-05-072-2-23
___CCGTCCATGG______AA___CGAAGGTT
2. _GC-05-072-2-23
___CCGTCCATGG______AA___CGAAGGTT
3. _GC-05-072-2-23
___CCGTCCATGG______AA___CGAAGGTT
4. _GC-05-072-2-23
___CCGTCCATGG______AA___CGAAGGTT
5. _GC-05-072-2-23
___CCGTCCATGG______AA___CGAAGGTT
6. _5223_4
___CCGTCC____________AA___CGAA___TT
7. _5223_1_>_FP
___CCGTCC____________AA___CGAA___TT
8. _5223_2_>_FP
___CCGTCC____________AA___CGAA___TT
9. _5223_3_>_FP
___CCGTCC____________AA___CGAA___TT
10. _5223_5_>_FP
___CCGTCC____________AA___CGAA___TT
11. _MAN15/2[BRA]
___CC___CT___GG______AC___CGAG______
12. _RUQ_86
___CCGTCT____________AC___CGAG___TT
13. _RUQ_86
ATCC____________CCAG___GT___AG______
14. _RUQ_86
___CCACAGATGG______AC___CGAGGGAA
15. _RUQ_86
___CCGTCT___GG______AC___CGAG___TT
16. _La_Montaña_Lot_6_Row_53_46-48
___CCGGCT____________AC___CGGG___CC
17. _C0297
___CCGTCT____________AC___CGAG___TT
18. _5A_N3/476_T2
___CCGTCT____________AC___CGAG___TT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-05-072-2-23
______ATAG___GGAACTAG___GGAACGAG
2. _GC-05-072-2-23
______ATAG___GGAACTAG___GGAACGAG
3. _GC-05-072-2-23
______ATAG___GGAACTAG___GGAACGAG
4. _GC-05-072-2-23
______ATAG___GGAACTAG___GGAACGAG
5. _GC-05-072-2-23
______ATAG___GGAACTAG___GGAACGAG
6. _5223_4
__________________AA_________GG______AG
7. _5223_1_>_FP
__________________AA_________GG______AG
8. _5223_2_>_FP
__________________AA_________GG______AG
9. _5223_3_>_FP
__________________AA_________GG______AG
10. _5223_5_>_FP
__________________AA_________GG______AG
11. _MAN15/2[BRA]
_______________GGAACT____________CC___
12. _RUQ_86
__________________AA_________GG______AG
13. _RUQ_86
CTAA___AGAA____________CT____________
14. _RUQ_86
______ATAG___GGAAAGGG___GGAACG___
15. _RUQ_86
_________AG___GGAA_______________-AG
16. _La_Montaña_Lot_6_Row_53_46-48
__________________AA_________GG______AA
17. _C0297
__________________AA_________GG______AG
18. _5A_N3/476_T2
__________________AA_________GG______AG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-05-072-2-23
______CC___ACCC___AGGTGGCG___ACCT
2. _GC-05-072-2-23
______CC___ACCC___AGGTGGCG___ACCT
3. _GC-05-072-2-23
______CC___ACCC___AGGTGGCG___ACCT
4. _GC-05-072-2-23
______CC___ACCC___AGGTGGCG___ACCT
5. _GC-05-072-2-23
______CC___ACCC___AGGTGGCG___ACCT
6. _5223_4
____________ACCC______GT___CG___AC___
7. _5223_1_>_FP
____________ACCC______GT___CG___AC___
8. _5223_2_>_FP
____________ACCC______GT___CG___AC___
9. _5223_3_>_FP
____________ACCC______GT___CG___AC___
10. _5223_5_>_FP
____________ACCC______GT___CG___AC___
11. _MAN15/2[BRA]
______________________________CG___ACCT
12. _RUQ_86
____________ACCC______GT___GG___AC___
13. _RUQ_86
___AC___CTAC___GG_________GGATACCT
14. _RUQ_86
AA___AC___AC______AAACAGCG___ACAG
15. _RUQ_86
____________ACCC______GT___CG___ACCT
16. _La_Montaña_Lot_6_Row_53_46-48
____________CCCT______TT___CG___AA___
17. _C0297
____________ACCC______GT___GG___AC___
18. _5A_N3/476_T2
____________ACCC______GT___GG___AC___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-05-072-2-23
AACC_________AAAA___AACCCCGGAG___
2. _GC-05-072-2-23
AACC_________AAAA___AACCCCGGAG___
3. _GC-05-072-2-23
AACC_________AAAA___AACCCCGGAG___
4. _GC-05-072-2-23
AACC_________AAAA___AACCCCGGAG___
5. _GC-05-072-2-23
AACC_________AAAA___AACCCCGGAG___
6. _5223_4
___CC_________AA_______________GG______
7. _5223_1_>_FP
___CC_________AA_______________GG______
8. _5223_2_>_FP
___CC_________AA_______________GG______
9. _5223_3_>_FP
___CC_________AA_______________GG______
10. _5223_5_>_FP
___CC_________AA_______________GG______
11. _MAN15/2[BRA]
AA_______________________________________
12. _RUQ_86
___CC_________AA_______________GG______
13. _RUQ_86
______TTAGCCAA___CG______CCGGAGTT
14. _RUQ_86
___GG____________AA___AA______CCAG___
15. _RUQ_86
___CC________________________CCGGAG___
16. _La_Montaña_Lot_6_Row_53_46-48
___CT_________AA_______________GG______
17. _C0297
___CC_________AA_______________GG______
18. _5A_N3/476_T2
___CC_________AA_______________GG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-05-072-2-23
GTGTTT___AC___GGAAGGCCCTCCGGCT
2. _GC-05-072-2-23
GTGTTT___AC___GGAAGGCCCTCCGGCT
3. _GC-05-072-2-23
GTGTTT___AC___GGAAGGCCCTCCGGCT
4. _GC-05-072-2-23
GTGTTT___AC___GGAAGGCCCTCCGGCT
5. _GC-05-072-2-23
GTGTTT___AC___GGAAGGCCCTCCGGCT
6. _5223_4
________________________GG___CT______CT
7. _5223_1_>_FP
________________________GG___CT______CT
8. _5223_2_>_FP
________________________GG___CT______CT
9. _5223_3_>_FP
________________________GG___CT______CT
10. _5223_5_>_FP
________________________GG___CT______CT
11. _MAN15/2[BRA]
GT__________________AGCCGGCT_________
12. _RUQ_86
________________________GG___CT______CT
13. _RUQ_86
_________TTACAATT___GG_________AG___
14. _RUQ_86
ACACAA___AC___CCAGCC___AGGGAGAG
15. _RUQ_86
______TT___AC_________GGCCTT___-___
16. _La_Montaña_Lot_6_Row_53_46-48
________________________GG___CC______TT
17. _C0297
________________________GG___CT______CT
18. _5A_N3/476_T2
________________________GG___CT______CT
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1. _GC-05-072-2-23
GGCC___AACTAACC______TTCG___CTGG
2. _GC-05-072-2-23
GGCC___AACTAACC______TTCG___CTGG
3. _GC-05-072-2-23
GGCC___AACTAACC______TTCG___CTGG
4. _GC-05-072-2-23
GGCC___AACTAACC______TTCG___CTGG
5. _GC-05-072-2-23
GGCC___AACTAACC______TTCG___CTGG
6. _5223_4
GG______AACTAA__________________CTGG
7. _5223_1_>_FP
GG______AACTAA__________________CTGG
8. _5223_2_>_FP
GG______AACTAA__________________CTGG
9. _5223_3_>_FP
GG______AACTAA__________________CTGG
10. _5223_5_>_FP
GG______AACTAA__________________CTGG
11. _MAN15/2[BRA]
____________CT_______________CG___CT___
12. _RUQ_86
GG______AACTAA__________________CTAG
13. _RUQ_86
______CC______AACCTTAA______CC___AG
14. _RUQ_86
GGGG___AAAGAA_________AA______AGAG
15. _RUQ_86
_______________AACC_______________CT___
16. _La_Montaña_Lot_6_Row_53_46-48
GG______AATTAA__________________CCAA
17. _C0297
GG______AACTAA__________________CTAG
18. _5A_N3/476_T2
GG______AA___AA__________________CTAG
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1. _GC-05-072-2-23
GGAACCAG___TTTTTTTTCTGG______AC
2. _GC-05-072-2-23
GGAACCAG___TTTTTTTTCTGG______AC
3. _GC-05-072-2-23
GGAACCAG___TTTTTTTTCTGG______AC
4. _GC-05-072-2-23
GGAACCAG___TTTTTTTTCTGG______AC
5. _GC-05-072-2-23
GGAACCAG___TTTTTTTTCTGG______AC
6. _5223_4
___AA____________TT______CT____________
7. _5223_1_>_FP
___AA____________TT______CT____________
8. _5223_2_>_FP
___AA____________TT______CT____________
9. _5223_3_>_FP
___AA____________TT______CT____________
10. _5223_5_>_FP
___AA____________TT______CT____________
11. _MAN15/2[BRA]
_________AG___TT________________________
12. _RUQ_86
___AA____________TT______CT____________
13. _RUQ_86
____________TT___TT____________GTAA___
14. _RUQ_86
CCAAGGAG_________AAAA___CC_________
15. _RUQ_86
GG______AG___TT________________________
16. _La_Montaña_Lot_6_Row_53_46-48
___________________________CC____________
17. _C0297
___AA____________TT______CT____________
18. _5A_N3/476_T2
___AA____________TT______CT____________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1. _GC-05-072-2-23
GTTT______TT___GG______CTCTCCCGAA
2. _GC-05-072-2-23
GTTT______TTCCGG______CTCTCCCGAA
3. _GC-05-072-2-23
GTTT______TT___GG______CTCTCCCGAA
4. _GC-05-072-2-23
GTTT______TT___GG______CTCTCCCGAA
5. _GC-05-072-2-23
GTTT______TTCCGG______CTCTCCCGAA
6. _5223_4
GTTT_____________________CT___CCCGAA
7. _5223_1_>_FP
GTTT_____________________CT___CCCGAA
8. _5223_2_>_FP
GTTT_________CC_________CT___CCCGAA
9. _5223_3_>_FP
GTTT_____________________CT___CCCGAA
10. _5223_5_>_FP
GTTT_________CC_________CT___CCCGAA
11. _MAN15/2[BRA]
______________________________CT___CG___
12. _RUQ_86
GTTT_________CC_________CT___CCCGAG
13. _RUQ_86
GT___GGAT_________AGGG_________CG___
14. _RUQ_86
AAAA______AGCCGG______AGAGGGCGAA
15. _RUQ_86
-_________CT_______________CTCCCGAA
16. _La_Montaña_Lot_6_Row_53_46-48
TTTT_________AA_______________CCGGAA
17. _C0297
GTTT_________CC_________CT___CCCGAA
18. _5A_N3/476_T2
GTTT_________CC_________CT___CCCGAA
 127 128 129 130 131 132 133 134       
1. _GC-05-072-2-23
CC______ACAGCCAGACX_XX_XX_XX_XX_XX_X
2. _GC-05-072-2-23
CC______ACAGCCAGACX_XX_XX_XX_XX_XX_X
3. _GC-05-072-2-23
CC______ACAGCCAGACX_XX_XX_XX_XX_XX_X
4. _GC-05-072-2-23
CC______ACAGCCAGACX_XX_XX_XX_XX_XX_X
5. _GC-05-072-2-23
CC______ACAGCCAGACX_XX_XX_XX_XX_XX_X
6. _5223_4
CC_____________________X_XX_XX_XX_XX_XX_X
7. _5223_1_>_FP
CC_____________________X_XX_XX_XX_XX_XX_X
8. _5223_2_>_FP
CC_____________________X_XX_XX_XX_XX_XX_X
9. _5223_3_>_FP
CC_____________________X_XX_XX_XX_XX_XX_X
10. _5223_5_>_FP
CC_____________________X_XX_XX_XX_XX_XX_X
11. _MAN15/2[BRA]
________________________X_XX_XX_XX_XX_XX_X
12. _RUQ_86
CC_____________________X_XX_XX_XX_XX_XX_X
13. _RUQ_86
___CTAT_______________X_XX_XX_XX_XX_XX_X
14. _RUQ_86
GG______AC___CCAGACX_XX_XX_XX_XX_XX_X
15. _RUQ_86
________________________X_XX_XX_XX_XX_XX_X
16. _La_Montaña_Lot_6_Row_53_46-48
________________________X_XX_XX_XX_XX_XX_X
17. _C0297
CC_____________________X_XX_XX_XX_XX_XX_X
18. _5A_N3/476_T2
CC_____________________X_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._MAN_15_/2_[BRA] GC-05-072-2-23
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
2._MAN_15_/2_[BRA] GC-05-072-2-23
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018
3._MAN_15_/2_[BRA] GC-05-072-2-23
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018
4._MAN_15_/2_[BRA] GC-05-072-2-23
Location: Tree: 4
Notes: 4
 Mars, 2018
5._MAN_15_/2_[BRA] GC-05-072-2-23
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018
6._MAN_15_/2_[BRA]
Location: 5223 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
7._MAN_15_/2_[BRA]
Location: 5223 1 > FP
 Dapeng Zhang, 2016
8._MAN_15_/2_[BRA]
Location: 5223 2 > FP
 Dapeng Zhang, 2016
9._MAN_15_/2_[BRA]
Location: 5223 3 > FP
 Dapeng Zhang, 2016
10._MAN_15_/2_[BRA]
Location: 5223 5 > FP
 Dapeng Zhang, 2016

Center for Forestry Research and Technology Transfer Vietnam

11._MAN_15_/2_[BRA]
 Jocelyn De Wever et al., 2019

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

12._MAN_15_/2_[BRA] RUQ 86
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

13._MAN_15_/2_[BRA] RUQ 86
 Lambert Motilal, 2023
14._MAN_15_/2_[BRA] RUQ 86
Notes: Reading_Collection
 Mars, 2018
15._MAN_15_/2_[BRA] RUQ 86
 Dapeng Zhang, 2014
16._MAN_15_/2_[BRA]
Location: La Montaña Lot 6 Row 53 46-48
 Dapeng Zhang, 2016

Malaysian Cocoa Board (MCB) Malaysia

17._MAN_15_/2_[BRA]
Location: C0297
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

18._MAN_15_/2_[BRA]
Location: 5A N3/476 T2
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1242 113TcSNP1253 114TcSNP1270 115TcSNP1275
116TcSNP1293 117TcSNP1309 118TcSNP1350 119TcSNP1383 120TcSNP1401
121TcSNP1404 122TcSNP1414 123TcSNP1439 124TcSNP1442 125TcSNP1458
126TcSNP1484 127TcSNP1520 128TcSNP1524 129TcSNP1527 130Tcm001s00947643
131Tcm002s20575712 132Tcm003s01336581 133Tcm003s07402719 134Tcm006s26664133