SNP Profiles of "MAN 15 /2 [BRA]"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-05-072-2-23
GGGGATGGCCTTCCCTCCGTCCATGGAA
2. _5223_5_>_FP
GG___AT_______________CCGTCC______AA
3. _GC-05-072-2-23
GGGGATGGCCTTCCCTCCGTCCATGGAA
4. _5223_2_>_FP
GG___AT_______________CCGTCC______AA
5. _GC-05-072-2-23
GGGGATGGCCTTCCCTCCGTCCATGGAA
6. _5223_4
GG___AT_______________CCGTCC______AA
7. _GC-05-072-2-23
GGGGATGGCCTTCCCTCCGTCCATGGAA
8. _5223_3_>_FP
GG___AT_______________CCGTCC______AA
9. _GC-05-072-2-23
GGGGATGGCCTTCCCTCCGTCCATGGAA
10. _5223_1_>_FP
GG___AT_______________CCGTCC______AA
11. _MAN15/2[BRA]
________________________CC___CT___GGAC
12. _RUQ_86
GG___AT_______________CCGTCT______AC
13. _RUQ_86
_______________TTCC___CCGTCT___GGAC
14. _RUQ_86
GGCCATGGGGAACCAGCCACAGATGGAC
15. _La_Montaña_Lot_6_Row_53_46-48
GG___TT_______________CCGGCT______AC
16. _C0297
GG___AT_______________CCGTCT______AC
17. _5A_N3/476_T2
GG___AT_______________CCGTCT______AC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-05-072-2-23
CGAAGGTTATAGGGAACTAGGGAACGAG
2. _5223_5_>_FP
CGAA___TT_________AA______GG______AG
3. _GC-05-072-2-23
CGAAGGTTATAGGGAACTAGGGAACGAG
4. _5223_2_>_FP
CGAA___TT_________AA______GG______AG
5. _GC-05-072-2-23
CGAAGGTTATAGGGAACTAGGGAACGAG
6. _5223_4
CGAA___TT_________AA______GG______AG
7. _GC-05-072-2-23
CGAAGGTTATAGGGAACTAGGGAACGAG
8. _5223_3_>_FP
CGAA___TT_________AA______GG______AG
9. _GC-05-072-2-23
CGAAGGTTATAGGGAACTAGGGAACGAG
10. _5223_1_>_FP
CGAA___TT_________AA______GG______AG
11. _MAN15/2[BRA]
CGAG____________GGAACT_________CC___
12. _RUQ_86
CGAG___TT_________AA______GG______AG
13. _RUQ_86
CGAG___TT___AGGGAA____________-AG
14. _RUQ_86
CGAGGGAAATAGGGAAAGGGGGAACG___
15. _La_Montaña_Lot_6_Row_53_46-48
CGGG___CC_________AA______GG______AA
16. _C0297
CGAG___TT_________AA______GG______AG
17. _5A_N3/476_T2
CGAG___TT_________AA______GG______AG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-05-072-2-23
___CCACCCAGGTGGCGACCTAACCAAAA
2. _5223_5_>_FP
______ACCC___GT___CGAC______CCAA___
3. _GC-05-072-2-23
___CCACCCAGGTGGCGACCTAACCAAAA
4. _5223_2_>_FP
______ACCC___GT___CGAC______CCAA___
5. _GC-05-072-2-23
___CCACCCAGGTGGCGACCTAACCAAAA
6. _5223_4
______ACCC___GT___CGAC______CCAA___
7. _GC-05-072-2-23
___CCACCCAGGTGGCGACCTAACCAAAA
8. _5223_3_>_FP
______ACCC___GT___CGAC______CCAA___
9. _GC-05-072-2-23
___CCACCCAGGTGGCGACCTAACCAAAA
10. _5223_1_>_FP
______ACCC___GT___CGAC______CCAA___
11. _MAN15/2[BRA]
_____________________CGACCTAA_________
12. _RUQ_86
______ACCC___GT___GGAC______CCAA___
13. _RUQ_86
______ACCC___GT___CGACCT___CC______
14. _RUQ_86
AAACAC___AAACAGCGACAG___GG___AA
15. _La_Montaña_Lot_6_Row_53_46-48
______CCCT___TT___CGAA______CTAA___
16. _C0297
______ACCC___GT___GGAC______CCAA___
17. _5A_N3/476_T2
______ACCC___GT___GGAC______CCAA___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-05-072-2-23
AACCCCGGAGGTGTTTACGGAAGGCCCT
2. _5223_5_>_FP
_________GG_____________________GG___CT
3. _GC-05-072-2-23
AACCCCGGAGGTGTTTACGGAAGGCCCT
4. _5223_2_>_FP
_________GG_____________________GG___CT
5. _GC-05-072-2-23
AACCCCGGAGGTGTTTACGGAAGGCCCT
6. _5223_4
_________GG_____________________GG___CT
7. _GC-05-072-2-23
AACCCCGGAGGTGTTTACGGAAGGCCCT
8. _5223_3_>_FP
_________GG_____________________GG___CT
9. _GC-05-072-2-23
AACCCCGGAGGTGTTTACGGAAGGCCCT
10. _5223_1_>_FP
_________GG_____________________GG___CT
11. _MAN15/2[BRA]
_______________GT____________AGCCGGCT
12. _RUQ_86
_________GG_____________________GG___CT
13. _RUQ_86
______CCGGAG______TTAC______GGCCTT
14. _RUQ_86
AA______CCAGACACAAACCCAGCC___AG
15. _La_Montaña_Lot_6_Row_53_46-48
_________GG_____________________GG___CC
16. _C0297
_________GG_____________________GG___CT
17. _5A_N3/476_T2
_________GG_____________________GG___CT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-05-072-2-23
CCGGCTGGCCAACTAACCTTCGCTGGGG
2. _5223_5_>_FP
______CTGG___AACTAA_________CTGG___
3. _GC-05-072-2-23
CCGGCTGGCCAACTAACCTTCGCTGGGG
4. _5223_2_>_FP
______CTGG___AACTAA_________CTGG___
5. _GC-05-072-2-23
CCGGCTGGCCAACTAACCTTCGCTGGGG
6. _5223_4
______CTGG___AACTAA_________CTGG___
7. _GC-05-072-2-23
CCGGCTGGCCAACTAACCTTCGCTGGGG
8. _5223_3_>_FP
______CTGG___AACTAA_________CTGG___
9. _GC-05-072-2-23
CCGGCTGGCCAACTAACCTTCGCTGGGG
10. _5223_1_>_FP
______CTGG___AACTAA_________CTGG___
11. _MAN15/2[BRA]
__________________CT_________CGCT______
12. _RUQ_86
______CTGG___AACTAA_________CTAG___
13. _RUQ_86
___-_______________AACC______CT___GG
14. _RUQ_86
GGAGAGGGGGAAAGAA___AA___AGAGCC
15. _La_Montaña_Lot_6_Row_53_46-48
______TTGG___AATTAA_________CCAA___
16. _C0297
______CTGG___AACTAA_________CTAG___
17. _5A_N3/476_T2
______CTGG___AA___AA_________CTAG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-05-072-2-23
AACCAGTTTTTTTTCTGGACGTTTTTCC
2. _5223_5_>_FP
AA_________TT______CT______GTTT___CC
3. _GC-05-072-2-23
AACCAGTTTTTTTTCTGGACGTTTTT___
4. _5223_2_>_FP
AA_________TT______CT______GTTT___CC
5. _GC-05-072-2-23
AACCAGTTTTTTTTCTGGACGTTTTT___
6. _5223_4
AA_________TT______CT______GTTT______
7. _GC-05-072-2-23
AACCAGTTTTTTTTCTGGACGTTTTT___
8. _5223_3_>_FP
AA_________TT______CT______GTTT______
9. _GC-05-072-2-23
AACCAGTTTTTTTTCTGGACGTTTTTCC
10. _5223_1_>_FP
AA_________TT______CT______GTTT______
11. _MAN15/2[BRA]
______AGTT______________________________
12. _RUQ_86
AA_________TT______CT______GTTT___CC
13. _RUQ_86
______AGTT__________________-___CT___
14. _RUQ_86
AAGGAG______AAAA___CC___AAAAAGCC
15. _La_Montaña_Lot_6_Row_53_46-48
_____________________CC______TTTT___AA
16. _C0297
AA_________TT______CT______GTTT___CC
17. _5A_N3/476_T2
AA_________TT______CT______GTTT___CC
 85 86 87 88 89 90 91 92 93 94 95 96   
1. _GC-05-072-2-23
GGCTCTCCCGAACCACAGCCAGACX_XX_X
2. _5223_5_>_FP
___CT___CCCGAACC_______________X_XX_X
3. _GC-05-072-2-23
GGCTCTCCCGAACCACAGCCAGACX_XX_X
4. _5223_2_>_FP
___CT___CCCGAACC_______________X_XX_X
5. _GC-05-072-2-23
GGCTCTCCCGAACCACAGCCAGACX_XX_X
6. _5223_4
___CT___CCCGAACC_______________X_XX_X
7. _GC-05-072-2-23
GGCTCTCCCGAACCACAGCCAGACX_XX_X
8. _5223_3_>_FP
___CT___CCCGAACC_______________X_XX_X
9. _GC-05-072-2-23
GGCTCTCCCGAACCACAGCCAGACX_XX_X
10. _5223_1_>_FP
___CT___CCCGAACC_______________X_XX_X
11. _MAN15/2[BRA]
______CT___CG_____________________X_XX_X
12. _RUQ_86
___CT___CCCGAGCC_______________X_XX_X
13. _RUQ_86
______CTCCCGAA__________________X_XX_X
14. _RUQ_86
GGAGAGGGCGAAGGAC___CCAGACX_XX_X
15. _La_Montaña_Lot_6_Row_53_46-48
_________CCGGAA__________________X_XX_X
16. _C0297
___CT___CCCGAACC_______________X_XX_X
17. _5A_N3/476_T2
___CT___CCCGAACC_______________X_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._MAN_15_/2_[BRA] GC-05-072-2-23
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018
2._MAN_15_/2_[BRA]
Location: 5223 5 > FP
 Dapeng Zhang, 2016
3._MAN_15_/2_[BRA] GC-05-072-2-23
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018
4._MAN_15_/2_[BRA]
Location: 5223 2 > FP
 Dapeng Zhang, 2016
5._MAN_15_/2_[BRA] GC-05-072-2-23
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
6._MAN_15_/2_[BRA]
Location: 5223 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
7._MAN_15_/2_[BRA] GC-05-072-2-23
Location: Tree: 4
Notes: 4
 Mars, 2018
8._MAN_15_/2_[BRA]
Location: 5223 3 > FP
 Dapeng Zhang, 2016
9._MAN_15_/2_[BRA] GC-05-072-2-23
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018
10._MAN_15_/2_[BRA]
Location: 5223 1 > FP
 Dapeng Zhang, 2016

Center for Forestry Research and Technology Transfer Vietnam

11._MAN_15_/2_[BRA]
 Jocelyn De Wever et al., 2019

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

12._MAN_15_/2_[BRA] RUQ 86
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

13._MAN_15_/2_[BRA] RUQ 86
 Dapeng Zhang, 2014
14._MAN_15_/2_[BRA] RUQ 86
Notes: Reading_Collection
 Mars, 2018
15._MAN_15_/2_[BRA]
Location: La Montaña Lot 6 Row 53 46-48
 Dapeng Zhang, 2016

Malaysian Cocoa Board (MCB) Malaysia

16._MAN_15_/2_[BRA]
Location: C0297
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

17._MAN_15_/2_[BRA]
Location: 5A N3/476 T2
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133