Genomic Data (Accession)  

Guiltinan, Mark (2019) Theobroma cacao Disease Resistance : Discovery and Functional Characterization of Genes Regulating Plant Immunity in Perennial Crops. NCBI

SampleNameClone nameRunExperimentBioSampleSampleSourceTree ID
Amaz-12AMAZ 12SRR9938279SRX6686844SAMN12500392CRI001P000003
Amaz-12AMAZ 12SRR9938231SRX6686892SAMN12500392CRI001P000003
Amaz-12AMAZ 12SRR9938273SRX6686850SAMN12500392CRI001P000003
Amaz-12AMAZ 12SRR9938280SRX6686843SAMN12500392CRI001P000003
Amaz-15/15AMAZ 15 /15SRR9938229SRX6686894SAMN12500390CRI001P000004
Amaz-15/15AMAZ 15 /15SRR9938284SRX6686839SAMN12500390CRI001P000004
Amaz-15/15AMAZ 15 /15SRR9938289SRX6686834SAMN12500390CRI001P000004
Amaz-15/15AMAZ 15 /15SRR9938290SRX6686833SAMN12500390CRI001P000004
COCA-3370-5COCA 3370 /5 [CHA]SRR9938228SRX6686895SAMN12500389CRI001P000007
COCA-3370-5COCA 3370 /5 [CHA]SRR9938281SRX6686842SAMN12500389CRI001P000007
COCA-3370-5COCA 3370 /5 [CHA]SRR9938282SRX6686841SAMN12500389CRI001P000007
COCA-3370-5COCA 3370 /5 [CHA]SRR9938283SRX6686840SAMN12500389CRI001P000007
ELP-37AELP 37 ASRR9938269SRX6686854SAMN12500403CRI001P000157
ELP-37AELP 37 ASRR9938247SRX6686876SAMN12500403CRI001P000157
ELP-37AELP 37 ASRR9938268SRX6686855SAMN12500403CRI001P000157
ELP-37AELP 37 ASRR9938270SRX6686853SAMN12500403CRI001P000157
GU-123VGU 123 /VSRR9938250SRX6686873SAMN12500400CRI001P000128
GU-123VGU 123 /VSRR9938313SRX6686810SAMN12500400CRI001P000128
GU-123VGU 123 /VSRR9938314SRX6686809SAMN12500400CRI001P000128
GU-123VGU 123 /VSRR9938317SRX6686806SAMN12500400CRI001P000128
GU-195VGU 195 /VSRR9938249SRX6686874SAMN12500401CRI001P000139
GU-195VGU 195 /VSRR9938335SRX6686788SAMN12500401CRI001P000139
GU-195VGU 195 /VSRR9938336SRX6686787SAMN12500401CRI001P000139
GU-195VGU 195 /VSRR9938337SRX6686786SAMN12500401CRI001P000139
GU-257EGU 257 /ESRR9938223SRX6686900SAMN12500396CRI001P000144
GU-257EGU 257 /ESRR9938326SRX6686797SAMN12500396CRI001P000144
GU-257EGU 257 /ESRR9938327SRX6686796SAMN12500396CRI001P000144
GU-257EGU 257 /ESRR9938329SRX6686794SAMN12500396CRI001P000144
IMC-105IMC 105SRR9938232SRX6686891SAMN12500393CRI001P000011
IMC-105IMC 105SRR9938277SRX6686846SAMN12500393CRI001P000011
IMC-105IMC 105SRR9938278SRX6686845SAMN12500393CRI001P000011
IMC-105IMC 105SRR9938272SRX6686851SAMN12500393CRI001P000011
IMC-31IMC 31SRR9938332SRX6686791SAMN12500394CRI001P000022
IMC-31IMC 31SRR9938233SRX6686890SAMN12500394CRI001P000022
IMC-31IMC 31SRR9938271SRX6686852SAMN12500394CRI001P000022
IMC-31IMC 31SRR9938333SRX6686790SAMN12500394CRI001P000022
IMC-57IMC 57SRR9938328SRX6686795SAMN12500395CRI001P000032
IMC-57IMC 57SRR9938330SRX6686793SAMN12500395CRI001P000032
IMC-57IMC 57SRR9938331SRX6686792SAMN12500395CRI001P000032
IMC-57IMC 57SRR9938234SRX6686889SAMN12500395CRI001P000032
IMC-60IMC 60SRR9938230SRX6686893SAMN12500391CRI001P000038
IMC-60IMC 60SRR9938274SRX6686849SAMN12500391CRI001P000038
IMC-60IMC 60SRR9938275SRX6686848SAMN12500391CRI001P000038
IMC-60IMC 60SRR9938276SRX6686847SAMN12500391CRI001P000038
KER-1LKER 1-LSRR9938251SRX6686872SAMN12500399CRI001P000164
KER-1LKER 1-LSRR9938315SRX6686808SAMN12500399CRI001P000164
KER-1LKER 1-LSRR9938316SRX6686807SAMN12500399CRI001P000164
KER-1LKER 1-LSRR9938318SRX6686805SAMN12500399CRI001P000164
KER-6KER 6SRR9938248SRX6686875SAMN12500402CRI001P000169
KER-6KER 6SRR9938266SRX6686857SAMN12500402CRI001P000169
KER-6KER 6SRR9938267SRX6686856SAMN12500402CRI001P000169
KER-6KER 6SRR9938339SRX6686784SAMN12500402CRI001P000169
NA-246NA 246SRR9938306SRX6686817SAMN12500404CRI001P000056
NA-246NA 246SRR9938246SRX6686877SAMN12500404CRI001P000056
NA-246NA 246SRR9938312SRX6686811SAMN12500404CRI001P000056
NA-246NA 246SRR9938338SRX6686785SAMN12500404CRI001P000056
NA-33NA 33SRR9938300SRX6686823SAMN12500386CRI001P000190
NA-33NA 33SRR9938302SRX6686821SAMN12500386CRI001P000190
NA-33NA 33SRR9938303SRX6686820SAMN12500386CRI001P000190
NA-33NA 33SRR9938308SRX6686815SAMN12500386CRI001P000190
NA-34NA 34SRR9938298SRX6686825SAMN12500385CRI001P000066
NA-34NA 34SRR9938299SRX6686824SAMN12500385CRI001P000066
NA-34NA 34SRR9938301SRX6686822SAMN12500385CRI001P000066
NA-34NA 34SRR9938323SRX6686800SAMN12500385CRI001P000066
NA-70NA 70SRR9938285SRX6686838SAMN12500387CRI001P000070
NA-70NA 70SRR9938304SRX6686819SAMN12500387CRI001P000070
NA-70NA 70SRR9938305SRX6686818SAMN12500387CRI001P000070
NA-70NA 70SRR9938307SRX6686816SAMN12500387CRI001P000070
NA-710NA 710SRR9938217SRX6686906SAMN12500383CRI001P000072
NA-710NA 710SRR9938239SRX6686884SAMN12500383CRI001P000072
NA-710NA 710SRR9938240SRX6686883SAMN12500383CRI001P000072
NA-710NA 710SRR9938244SRX6686879SAMN12500383CRI001P000072
NA-807NA 807SRR9938243SRX6686880SAMN12500384CRI001P000076
NA-807NA 807SRR9938220SRX6686903SAMN12500384CRI001P000076
NA-807NA 807SRR9938296SRX6686827SAMN12500384CRI001P000076
NA-807NA 807SRR9938297SRX6686826SAMN12500384CRI001P000076
NA-916NA 916SRR9938218SRX6686905SAMN12500382CRI001P000078
NA-916NA 916SRR9938235SRX6686888SAMN12500382CRI001P000078
NA-916NA 916SRR9938241SRX6686882SAMN12500382CRI001P000078
NA-916NA 916SRR9938242SRX6686881SAMN12500382CRI001P000078
OYA-2BOYA 2 BSRR9938224SRX6686899SAMN12500397CRI001P000172
OYA-2BOYA 2 BSRR9938320SRX6686803SAMN12500397CRI001P000172
OYA-2BOYA 2 BSRR9938324SRX6686799SAMN12500397CRI001P000172
OYA-2BOYA 2 BSRR9938325SRX6686798SAMN12500397CRI001P000172
PA-107PA 107 [PER]SRR9938225SRX6686898SAMN12500410CRI001P000087
PA-107PA 107 [PER]SRR9938226SRX6686897SAMN12500410CRI001P000087
PA-107PA 107 [PER]SRR9938259SRX6686864SAMN12500410CRI001P000087
PA-107PA 107 [PER]SRR9938262SRX6686861SAMN12500410CRI001P000087
PA-13PA 13 [PER]SRR9938255SRX6686868SAMN12500406CRI001P000094
PA-13PA 13 [PER]SRR9938291SRX6686832SAMN12500406CRI001P000094
PA-13PA 13 [PER]SRR9938292SRX6686831SAMN12500406CRI001P000094
PA-13PA 13 [PER]SRR9938293SRX6686830SAMN12500406CRI001P000094
PA-16PA 16 [PER]SRR9938245SRX6686878SAMN12500405CRI001P000101
PA-16PA 16 [PER]SRR9938294SRX6686829SAMN12500405CRI001P000101
PA-16PA 16 [PER]SRR9938295SRX6686828SAMN12500405CRI001P000101
PA-16PA 16 [PER]SRR9938334SRX6686789SAMN12500405CRI001P000101
PA-279PA 279 [PER]SRR9938221SRX6686902SAMN12500407CRI001P000105
PA-279PA 279 [PER]SRR9938222SRX6686901SAMN12500407CRI001P000105
PA-279PA 279 [PER]SRR9938254SRX6686869SAMN12500407CRI001P000105
PA-279PA 279 [PER]SRR9938256SRX6686867SAMN12500407CRI001P000105
PA-299PA 299 [PER]SRR9938258SRX6686865SAMN12500409CRI001P000108
PA-299PA 299 [PER]SRR9938260SRX6686863SAMN12500409CRI001P000108
PA-299PA 299 [PER]SRR9938261SRX6686862SAMN12500409CRI001P000108
PA-299PA 299 [PER]SRR9938265SRX6686858SAMN12500409CRI001P000108
PA-71PA 71 [PER]SRR9938219SRX6686904SAMN12500408CRI001P000122
PA-71PA 71 [PER]SRR9938253SRX6686870SAMN12500408CRI001P000122
PA-71PA 71 [PER]SRR9938257SRX6686866SAMN12500408CRI001P000122
PA-71PA 71 [PER]SRR9938264SRX6686859SAMN12500408CRI001P000122
PA-81PA 81 [PER]SRR9938216SRX6686907SAMN12500411CRI001P000123
PA-81PA 81 [PER]SRR9938263SRX6686860SAMN12500411CRI001P000123
PA-81PA 81 [PER]SRR9938309SRX6686814SAMN12500411CRI001P000123
PA-81PA 81 [PER]SRR9938310SRX6686813SAMN12500411CRI001P000123
PinaPINASRR9938252SRX6686871SAMN12500398CRI001P000176
PinaPINASRR9938319SRX6686804SAMN12500398CRI001P000176
PinaPINASRR9938321SRX6686802SAMN12500398CRI001P000176
PinaPINASRR9938322SRX6686801SAMN12500398CRI001P000176
Pound-7POUND 7SRR9938237SRX6686886SAMN12500381CRI001P000082
Pound-7POUND 7SRR9938236SRX6686887SAMN12500381CRI001P000082
Pound-7POUND 7SRR9938238SRX6686885SAMN12500381CRI001P000082
Pound-7POUND 7SRR9938311SRX6686812SAMN12500381CRI001P000082
SPEC-54/1SPEC 54 /1SRR9938227SRX6686896SAMN12500388CRI001P000050
SPEC-54/1SPEC 54 /1SRR9938286SRX6686837SAMN12500388CRI001P000050
SPEC-54/1SPEC 54 /1SRR9938287SRX6686836SAMN12500388CRI001P000050
SPEC-54/1SPEC 54 /1SRR9938288SRX6686835SAMN12500388CRI001P000050